TCONS_00001547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001547
Unique NameTCONS_00001547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001547 ID=TCONS_00001547|Name=TCONS_00001547|organism=Clytia hemisphaerica|type=transcript|length=1616bp
agTTTTTGTCTCTTCCCTTTCCATTTGTGTTgtttttcgtttcttttcac
tttttgtttgactgttattttttgtttacttttctttATAGATTTGTTTT
AGTGAAACTTCtcttttcaaattgttttttatatCTCTCttcgtttgttt
tattttttgtgttgtTCTGTTATTTTTATTTACGTTGATTGCTTGCTTGT
TTGTTTGTATAAACTTCTCTTTGCCCCTTCCCTTTGTTCTTCTGtggttc
tttttctttgttttttttttcgttgaaTTGTTGTTTtcgttcattttcct
tgagtgtTTTTTGTGAAACTACCCTTTGTCTGTTCCTTTTCTtgagtgtt
tttcttttctcgTTCGTTTTTGATTTTCGTTGAGCTGAcgttttctttta
cttttcttgaCAACTTTTCCCTTTGTGAAACTTTTCTTTTGCTTTgcttt
tgtgttgttttttcgTTCGTTTTCATTTTTCGTTTACTTTTCtcgacttt
tttctttttgtgaaaCTTCTCTTTGTCTTTTTCCTTtgcttttgtgtttt
tttttctcgttcGTTTTCAATTTTCGTTTACTTTTCTCGACTGTTTTCCT
TTTGTGAAACTTCTCTTTTGCTTtgcttttgtgttttttttttcgttcgt
tttcattttttgtttacttttcctAACTGTTTTCTTTTTGTGAAACTTCT
CTTTTGCTATacttttgtgttgtttttttcgTTCGTTTTCATTTTTCGTT
TACTTTTCtcgacttttttctttttgtgaaaCTTCTCTTTGTCTTTTTCC
TTTGCTTTTgtgttcttttttttctcgttcCTTTTCAATTTTCGTTTACT
TTTCTCGACTGTTTTCCTTTTGTGAAACTTCTCTTTTGCTTtgcttttgt
gtttttttttcgttcgttttcattttttgtttacttttcctAACTGTTTT
CTTTTTGTGAAACTTCTCTTTTGctttgcttttgttttttttctcgttcG
TTTTCAATTTTCGTTTACTTTTCTCGACTTATTTCTTCAtgtgaaacttt
tttttgtctttttcttttgcttttgtgttgttttttttctcattcgtttt
tattttttgttgaattgtTGTTTTCGTTAATTTTTCTTGACTGTTTTCTT
TTAATGAAACTTCTCTTTtgcttttgtgtttttttctcgtttgttttcat
ttttcgtttacttttcttgactttttgtGAACATCTCTTTTGTCTTTTGT
CTCTTGCTTTTCGAATTTTTCGTTGAACTGTTACTGCTGTTTActtattt
tttggttttgtaAACTTGTCTTTGTCTCTTCCTTTCAGTTTTTTGTGTCC
CCtcgtttgatttttgtttttcgtTTACTCCCTGTTTACTTTGTAGTTTT
CTTTGTACAACTTGTTCTTGTTATTCTATCTATCCTGTATTTAACTTTCA
ATTTCTTGTGTTTTCCACGTTTTTCCTTTTCCTGGTCTATTTTGCCCACC
TcttccaatgaaaaaaaatcataaatttctcAACTTATCAGAACTTATAG
ttcatttattttgtttttcattttgtttaattgttattttaatttttcga
tATAGTAACTCAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000010:963533..965148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001547 ID=TCONS_00001547|Name=TCONS_00001547|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at sc0000010:963533..965148 (Clytia hemisphaerica)
ATTTTGAGTTACTATatcgaaaaattaaaataacaattaaacaaaatgaa aaacaaaataaatgaaCTATAAGTTCTGATAAGTTgagaaatttatgatt ttttttcattggaagAGGTGGGCAAAATAGACCAGGAAAAGGAAAAACGT GGAAAACACAAGAAATTGAAAGTTAAATACAGGATAGATAGAATAACAAG AACAAGTTGTACAAAGAAAACTACAAAGTAAACAGGGAGTAAacgaaaaa caaaaatcaaacgaGGGGACACAAAAAACTGAAAGGAAGAGACAAAGACA AGTTtacaaaaccaaaaaataagTAAACAGCAGTAACAGTTCAACGAAAA ATTCGAAAAGCAAGAGACAAAAGACAAAAGAGATGTTCacaaaaagtcaa gaaaagtaaacgaaaaatgaaaacaaacgagaaaaaaacacaaaagcaAA AGAGAAGTTTCATTAAAAGAAAACAGTCAAGAAAAATTAACGAAAACAac aattcaacaaaaaataaaaacgaatgagaaaaaaaacaacacaaaagcaa aagaaaaagacaaaaaaaagtttcacaTGAAGAAATAAGTCGAGAAAAGT AAACGAAAATTGAAAACgaacgagaaaaaaaacaaaagcaaagCAAAAGA GAAGTTTCACAAAAAGAAAACAGTTaggaaaagtaaacaaaaaatgaaaa cgaacgaaaaaaaaacacaaaagcaAAGCAAAAGAGAAGTTTCACAAAAG GAAAACAGTCGAGAAAAGTAAACGAAAATTGAAAAGgaacgagaaaaaaa agaacacAAAAGCAAAGGAAAAAGACAAAGAGAAGtttcacaaaaagaaa aaagtcgaGAAAAGTAAACGAAAAATGAAAACGAAcgaaaaaaacaacac aaaagtATAGCAAAAGAGAAGTTTCACAAAAAGAAAACAGTTaggaaaag taaacaaaaaatgaaaacgaacgaaaaaaaaaacacaaaagcaAAGCAAA AGAGAAGTTTCACAAAAGGAAAACAGTCGAGAAAAGTAAACGAAAATTGA AAACgaacgagaaaaaaaaacacaaaagcaAAGGAAAAAGACAAAGAGAA GtttcacaaaaagaaaaaagtcgaGAAAAGTAAACGAAAAATGAAAACGA AcgaaaaaacaacacaaaagcAAAGCAAAAGAAAAGTTTCACAAAGGGAA AAGTTGtcaagaaaagtaaaagaaaacgTCAGCTCAACGAAAATCAAAAA CGAAcgagaaaagaaaaacactcaAGAAAAGGAACAGACAAAGGGTAGTT TCACAAAAAacactcaaggaaaatgaacgaAAACAACAAttcaacgaaaa aaaaaacaaagaaaaagaaccaCAGAAGAACAAAGGGAAGGGGCAAAGAG AAGTTTATACAAACAAACAAGCAAGCAATCAACGTAAATAAAAATAACAG AacaacacaaaaaataaaacaaacgaaGAGAGatataaaaaacaatttga aaagaGAAGTTTCACTAAAACAAATCTATaaagaaaagtaaacaaaaaat aacagtcaaacaaaaagtgaaaagaaacgaaaaacAACACAAATGGAAAG GGAAGAGACAAAAAct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000806XLOC_000806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001547-exon-sc0000010-1491911889:963533..965148TCONS_00001547-exon-sc0000010-1491911889:963533..965148Clytia hemisphaericaexon
TCONS_00001547-exon-sc0000010-1510915933:963533..965148TCONS_00001547-exon-sc0000010-1510915933:963533..965148Clytia hemisphaericaexon
TCONS_00001547-exon-sc0000010-1575043694:963533..965148TCONS_00001547-exon-sc0000010-1575043694:963533..965148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:963533..965148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0252152 0.0245888 0.0285499 0 1.46217 1.23604 1.45881 0.940832 1.35989 0.342153 1.81379 1.88083 0.754642 0.975275 2.10475 2.73504 1.45753 1.12529 0 0.0280488 0.609486 0.642138 0.491491 0.183991 0.379014 0.676521 0.1383 0.0737987 0.0279869 0.0285142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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