TCONS_00001546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001546
Unique NameTCONS_00001546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001546 ID=TCONS_00001546|Name=TCONS_00001546|organism=Clytia hemisphaerica|type=transcript|length=361bp
aacacgataaaaatgacacaaaaatCTATATGTTAAACTACATCATTCAT
TATATTCATAATAAGCACGTATTCAACATTCAAAACACGATACAACAGTC
AAGAACACCaacaaattagcctatcatagggtaattagactattttatat
agtctaattagccgaaaatcgacaaaaatgtCGATTGCTGAGGTGTGtct
atttttcacttttgtttcATTGCCTAAAGTCAAAGGAAACTTTTTCATCT
AATCTGATATAACATCGGCAACAGTAAGTTCCTCTTATTTTGCATATTTA
TGTTTATACATATTCTGCTGAATCgacgggacgagatggagtttttacaa
gctcttatttg
Run BLAST on NCBI

transcript from alignment at sc0000010:961480..961840

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001546 ID=TCONS_00001546|Name=TCONS_00001546|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at sc0000010:961480..961840 (Clytia hemisphaerica)
caaataagagcttgtaaaaactccatctcgtcccgtcGATTCAGCAGAAT ATGTATAAACATAAATATGCAAAATAAGAGGAACTTACTGTTGCCGATGT TATATCAGATTAGATGAAAAAGTTTCCTTTGACTTTAGGCAATgaaacaa aagtgaaaaatagaCACACCTCAGCAATCGacatttttgtcgattttcgg ctaattagactatataaaatagtctaattaccctatgataggctaatttg ttGGTGTTCTTGACTGTTGTATCGTGTTTTGAATGTTGAATACGTGCTTA TTATGAATATAATGAATGATGTAGTTTAACATATAGatttttgtgtcatt tttatcgtgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000805XLOC_000805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001546-exon-sc0000010-1491911889:961480..961840TCONS_00001546-exon-sc0000010-1491911889:961480..961840Clytia hemisphaericaexon
TCONS_00001546-exon-sc0000010-1510915933:961480..961840TCONS_00001546-exon-sc0000010-1510915933:961480..961840Clytia hemisphaericaexon
TCONS_00001546-exon-sc0000010-1575043694:961480..961840TCONS_00001546-exon-sc0000010-1575043694:961480..961840Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:961480..961840 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40251 0.619812 1.71767 0.659537 7.55427 4.97457 2.10056 3.37118 0.394182 0.730885 0 0.311888 1.55438 0.80694 0.721474 0 1.34386 2.32389 2.89137 1.09436 3.41007 1.93646 0.666386 2.55087 0.751794 0.447305 1.23663 2.6845 1.20465 1.19421
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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