|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001542 ID=TCONS_00001542|Name=TCONS_00001542|organism=Clytia hemisphaerica|type=transcript|length=1200bp
tttttatttattaataCTTTTTATTAAAGATTGATAAGGTTCTTCTGATT
TATTtcgtttttcttcaaaattaattACATTAAATGAGTCTATTACCaag
tttttaaataataaaatgatgATGTTCATGTTCATGAATTACAGTAGAAT
CTCTACAACTCGATCGGTCATTCATCGCTTGTGATCAAAATATCATTACT
TAATTTGAAGAAGTAGTTTGTCGACTTTGAAGATTTGAACTATTAGTGTA
AGTAACATCATCAACATTTCCGCCAcgtttaaaaatctttctcaAGAGAA
ATAAAGTTTGTGTGCGGAGAGTCTTATTAAATCTCACAATAAAGATAGCA
TCAGATattggattgatattcccaaaaatatAGGAGATATAATTATAAGG
GTGCTCTTGATCTTCGGTTAGAAATAATGTAACAACAGTTGGAAACCAAA
GGACAATAAAAGTCAATGTACATCCAAAACAAGCATAGAAAGTTGATAAA
TCACTTTTCTTGACTCCAATTTCAATCTCATTATCTTGCATTTGGGCTTG
TCTGTTTTGATTTCGTATTTTAGCTTTCTGTTTCAATGTTATCAAGTAGA
CAATAATATTTATtgactaggtcacagtgtggatctaaaccacactgaaa
cgaccgccttacATCACgaatcacgctcgcgaaagagcgcgcgcacatta
ttaacatgtcatctccagtacattttagattattcattgaaaacagatta
caatatagtcatttttcgtgtctcgattattcaattccgaataaaagata
ttcagcgaaaaaaaagagaaacacctgggtaatctagttaaaaaaaccga
aagtaaatggcagacaaagtaatgagccaaggcaaaacgagattagcgta
ccactatgaaagaaaccgcctccggcggtcgataacaTGATCAGCATAAG
GCACAACAGTCCAATAGCTACGACTTTCTGATTAGCAGCGACTTCGACAG
TCAAATGCACCCTTATAACATCATACAAAAAGTAAACCGGTCCAATCCCG
ATTAATCCGAAATGTACAAATCGGGTTAACCCAGCATAGGCAAAAGGAAA
TCGAATGGCAACTCCACGGTCGATAGCAAGCGATAGTAAAGCAATATTAG
AACATGTAAATGCAGAATAAGCCACATGCTTTATAACCGGTATAAAGACT Run BLAST on NCBI protein sequence of TCONS_00001542-protein >TCONS_00001542-protein ID=TCONS_00001542-protein|Name=TCONS_00001542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
VFIPVIKHVAYSAFTCSNIALLSLAIDRGVAIRFPFAYAGLTRFVHFGLI
GIGPVYFLYDVIRVHLTVEVAANQKVVAIGLLCLMLIMLSTAGGGFFHSG
TLISFCLGSLLCLPFTFGFFN Run BLAST on NCBI transcript from alignment at sc0000010:865524..866723 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001542 ID=TCONS_00001542|Name=TCONS_00001542|organism=Clytia hemisphaerica|type=transcript|length=1200bp|location=Sequence derived from alignment at sc0000010:865524..866723 (Clytia hemisphaerica)
AGTCTTTATACCGGTTATAAAGCATGTGGCTTATTCTGCATTTACATGTT
CTAATATTGCTTTACTATCGCTTGCTATCGACCGTGGAGTTGCCATTCGA
TTTCCTTTTGCCTATGCTGGGTTAACCCGATTTGTACATTTCGGATTAAT
CGGGATTGGACCGGTTTACTTTTTGTATGATGTTATAAGGGTGCATTTGA
CTGTCGAAGTCGCTGCTAATCAGAAAGTCGTAGCTATTGGACTGTTGTGC
CTTATGCTGATCAtgttatcgaccgccggaggcggtttctttcatagtgg
tacgctaatctcgttttgccttggctcattactttgtctgccatttactt
tcggtttttttaactagattacccaggtgtttctcttttttttcgctgaa
tatcttttattcggaattgaataatcgagacacgaaaaatgactatattg
taatctgttttcaatgaataatctaaaatgtactggagatgacatgttaa
taatgtgcgcgcgctctttcgcgagcgtgattcGTGATgtaaggcggtcg
tttcagtgtggtttagatccacactgtgacctagtcaATAAATATTATTG
TCTACTTGATAACATTGAAACAGAAAGCTAAAATACGAAATCAAAACAGA
CAAGCCCAAATGCAAGATAATGAGATTGAAATTGGAGTCAAGAAAAGTGA
TTTATCAACTTTCTATGCTTGTTTTGGATGTACATTGACTTTTATTGTCC
TTTGGTTTCCAACTGTTGTTACATTATTTCTAACCGAAGATCAAGAGCAC
CCTTATAATTATATCTCCTatatttttgggaatatcaatccaatATCTGA
TGCTATCTTTATTGTGAGATTTAATAAGACTCTCCGCACACAAACTTTAT
TTCTCTtgagaaagatttttaaacgTGGCGGAAATGTTGATGATGTTACT
TACACTAATAGTTCAAATCTTCAAAGTCGACAAACTACTTCTTCAAATTA
AGTAATGATATTTTGATCACAAGCGATGAATGACCGATCGAGTTGTAGAG
ATTCTACTGTAATTCATGAACATGAACATcatcattttattatttaaaaa
cttGGTAATAGACTCATTTAATGTaattaattttgaagaaaaacgaAATA
AATCAGAAGAACCTTATCAATCTTTAATAAAAAGtattaataaataaaaa
Coding sequence (CDS) from alignment at sc0000010:865524..866723 >TCONS_00001542 ID=TCONS_00001542|Name=TCONS_00001542|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000010:865524..866723 (Clytia hemisphaerica)
GTCTTTATACCGGTTATAAAGCATGTGGCTTATTCTGCATTTACATGTTC
TAATATTGCTTTACTATCGCTTGCTATCGACCGTGGAGTTGCCATTCGAT
TTCCTTTTGCCTATGCTGGGTTAACCCGATTTGTACATTTCGGATTAATC
GGGATTGGACCGGTTTACTTTTTGTATGATGTTATAAGGGTGCATTTGAC
TGTCGAAGTCGCTGCTAATCAGAAAGTCGTAGCTATTGGACTGTTGTGCC
TTATGCTGATCAtgttatcgaccgccggaggcggtttctttcatagtggt
acgctaatctcgttttgccttggctcattactttgtctgccatttacttt
cggtttttttaactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001542-exon-sc0000010-1491911889:865524..866723 | TCONS_00001542-exon-sc0000010-1491911889:865524..866723 | Clytia hemisphaerica | exon |
| TCONS_00001542-exon-sc0000010-1510915933:865524..866723 | TCONS_00001542-exon-sc0000010-1510915933:865524..866723 | Clytia hemisphaerica | exon |
| TCONS_00001542-exon-sc0000010-1575043694:865524..866723 | TCONS_00001542-exon-sc0000010-1575043694:865524..866723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:865524..866723 . |
Blast
The following BLAST results are available for this feature:
|
