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TCONS_00001542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001542
Unique NameTCONS_00001542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001542 ID=TCONS_00001542|Name=TCONS_00001542|organism=Clytia hemisphaerica|type=transcript|length=1200bp
tttttatttattaataCTTTTTATTAAAGATTGATAAGGTTCTTCTGATT
TATTtcgtttttcttcaaaattaattACATTAAATGAGTCTATTACCaag
tttttaaataataaaatgatgATGTTCATGTTCATGAATTACAGTAGAAT
CTCTACAACTCGATCGGTCATTCATCGCTTGTGATCAAAATATCATTACT
TAATTTGAAGAAGTAGTTTGTCGACTTTGAAGATTTGAACTATTAGTGTA
AGTAACATCATCAACATTTCCGCCAcgtttaaaaatctttctcaAGAGAA
ATAAAGTTTGTGTGCGGAGAGTCTTATTAAATCTCACAATAAAGATAGCA
TCAGATattggattgatattcccaaaaatatAGGAGATATAATTATAAGG
GTGCTCTTGATCTTCGGTTAGAAATAATGTAACAACAGTTGGAAACCAAA
GGACAATAAAAGTCAATGTACATCCAAAACAAGCATAGAAAGTTGATAAA
TCACTTTTCTTGACTCCAATTTCAATCTCATTATCTTGCATTTGGGCTTG
TCTGTTTTGATTTCGTATTTTAGCTTTCTGTTTCAATGTTATCAAGTAGA
CAATAATATTTATtgactaggtcacagtgtggatctaaaccacactgaaa
cgaccgccttacATCACgaatcacgctcgcgaaagagcgcgcgcacatta
ttaacatgtcatctccagtacattttagattattcattgaaaacagatta
caatatagtcatttttcgtgtctcgattattcaattccgaataaaagata
ttcagcgaaaaaaaagagaaacacctgggtaatctagttaaaaaaaccga
aagtaaatggcagacaaagtaatgagccaaggcaaaacgagattagcgta
ccactatgaaagaaaccgcctccggcggtcgataacaTGATCAGCATAAG
GCACAACAGTCCAATAGCTACGACTTTCTGATTAGCAGCGACTTCGACAG
TCAAATGCACCCTTATAACATCATACAAAAAGTAAACCGGTCCAATCCCG
ATTAATCCGAAATGTACAAATCGGGTTAACCCAGCATAGGCAAAAGGAAA
TCGAATGGCAACTCCACGGTCGATAGCAAGCGATAGTAAAGCAATATTAG
AACATGTAAATGCAGAATAAGCCACATGCTTTATAACCGGTATAAAGACT
Run BLAST on NCBI

protein sequence of TCONS_00001542-protein

>TCONS_00001542-protein ID=TCONS_00001542-protein|Name=TCONS_00001542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
VFIPVIKHVAYSAFTCSNIALLSLAIDRGVAIRFPFAYAGLTRFVHFGLI
GIGPVYFLYDVIRVHLTVEVAANQKVVAIGLLCLMLIMLSTAGGGFFHSG
TLISFCLGSLLCLPFTFGFFN
Run BLAST on NCBI

transcript from alignment at sc0000010:865524..866723

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001542 ID=TCONS_00001542|Name=TCONS_00001542|organism=Clytia hemisphaerica|type=transcript|length=1200bp|location=Sequence derived from alignment at sc0000010:865524..866723 (Clytia hemisphaerica)
AGTCTTTATACCGGTTATAAAGCATGTGGCTTATTCTGCATTTACATGTT CTAATATTGCTTTACTATCGCTTGCTATCGACCGTGGAGTTGCCATTCGA TTTCCTTTTGCCTATGCTGGGTTAACCCGATTTGTACATTTCGGATTAAT CGGGATTGGACCGGTTTACTTTTTGTATGATGTTATAAGGGTGCATTTGA CTGTCGAAGTCGCTGCTAATCAGAAAGTCGTAGCTATTGGACTGTTGTGC CTTATGCTGATCAtgttatcgaccgccggaggcggtttctttcatagtgg tacgctaatctcgttttgccttggctcattactttgtctgccatttactt tcggtttttttaactagattacccaggtgtttctcttttttttcgctgaa tatcttttattcggaattgaataatcgagacacgaaaaatgactatattg taatctgttttcaatgaataatctaaaatgtactggagatgacatgttaa taatgtgcgcgcgctctttcgcgagcgtgattcGTGATgtaaggcggtcg tttcagtgtggtttagatccacactgtgacctagtcaATAAATATTATTG TCTACTTGATAACATTGAAACAGAAAGCTAAAATACGAAATCAAAACAGA CAAGCCCAAATGCAAGATAATGAGATTGAAATTGGAGTCAAGAAAAGTGA TTTATCAACTTTCTATGCTTGTTTTGGATGTACATTGACTTTTATTGTCC TTTGGTTTCCAACTGTTGTTACATTATTTCTAACCGAAGATCAAGAGCAC CCTTATAATTATATCTCCTatatttttgggaatatcaatccaatATCTGA TGCTATCTTTATTGTGAGATTTAATAAGACTCTCCGCACACAAACTTTAT TTCTCTtgagaaagatttttaaacgTGGCGGAAATGTTGATGATGTTACT TACACTAATAGTTCAAATCTTCAAAGTCGACAAACTACTTCTTCAAATTA AGTAATGATATTTTGATCACAAGCGATGAATGACCGATCGAGTTGTAGAG ATTCTACTGTAATTCATGAACATGAACATcatcattttattatttaaaaa cttGGTAATAGACTCATTTAATGTaattaattttgaagaaaaacgaAATA AATCAGAAGAACCTTATCAATCTTTAATAAAAAGtattaataaataaaaa

Coding sequence (CDS) from alignment at sc0000010:865524..866723

>TCONS_00001542 ID=TCONS_00001542|Name=TCONS_00001542|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000010:865524..866723 (Clytia hemisphaerica)
GTCTTTATACCGGTTATAAAGCATGTGGCTTATTCTGCATTTACATGTTC
TAATATTGCTTTACTATCGCTTGCTATCGACCGTGGAGTTGCCATTCGAT
TTCCTTTTGCCTATGCTGGGTTAACCCGATTTGTACATTTCGGATTAATC
GGGATTGGACCGGTTTACTTTTTGTATGATGTTATAAGGGTGCATTTGAC
TGTCGAAGTCGCTGCTAATCAGAAAGTCGTAGCTATTGGACTGTTGTGCC
TTATGCTGATCAtgttatcgaccgccggaggcggtttctttcatagtggt
acgctaatctcgttttgccttggctcattactttgtctgccatttacttt
cggtttttttaactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000801XLOC_000801Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001542-proteinTCONS_00001542-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001542-exon-sc0000010-1491911889:865524..866723TCONS_00001542-exon-sc0000010-1491911889:865524..866723Clytia hemisphaericaexon
TCONS_00001542-exon-sc0000010-1510915933:865524..866723TCONS_00001542-exon-sc0000010-1510915933:865524..866723Clytia hemisphaericaexon
TCONS_00001542-exon-sc0000010-1575043694:865524..866723TCONS_00001542-exon-sc0000010-1575043694:865524..866723Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:865524..866723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.74476 7.33664 9.35095 9.63093 1.12566 0.658825 1.40796 1.23542 0.937959 0.54512 0.742664 0.806189 0.639851 0.912702 0.509568 0.528606 0.367389 0.854388 0.803118 0.372329 1.16502 0.596673 3.78523 4.24294 0.494481 1.07116 0.711135 0.475575 2.29093 2.53434
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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