TCONS_00001526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001526
Unique NameTCONS_00001526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001526 ID=TCONS_00001526|Name=TCONS_00001526|organism=Clytia hemisphaerica|type=transcript|length=570bp
tactttagggtactaactgctgaaagggggtggtatctcagaatttttca
aaaaatcaattagtactTTAGGATACTAAGTGCTTGAAAATGGGTTGCTG
TCTACTGTCTGCGTTTTAAAAAAAGTCTCTCAGCTGAAATATTTTGACAT
TACTCACTCAAATGTTTTGACCATACAATGTCTTATAATTTTACAATGAA
CAATATATCATATTGACTTTGCAGTGTCTTCTATTCACAGGATGAAAGAC
ACACCCGGCACACCACATTcgatttcatttgttttgattcagTTTGATTt
tgtagtgtcttctttttttgataacAAGAGATTTGACTGGATTTGATGCA
AAAGTCAGACGGCTGATTTGAACATATTTGAAGAGGTCTTTTAGTGAAGT
TAGAGATGTTTTAAAATCACAATGCTTTAAAGCCTTCTGGTTTGATATGG
CGCTTTTTTATAGAAAGTCCTGAAAAGGGTTTGTACAACTTCTACCTTTC
AGAAAACTAGGCAATTCTCTCAGTCTTTCAGTAAGTCTTGTAAGTCTTTT
AAACGTTGCTCTTGTTGCTG
Run BLAST on NCBI

transcript from alignment at sc0000010:220013..220582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001526 ID=TCONS_00001526|Name=TCONS_00001526|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0000010:220013..220582 (Clytia hemisphaerica)
CAGCAACAAGAGCAACGTTTAAAAGACTTACAAGACTTACTGAAAGACTG
AGAGAATTGCCTAGTTTTCTGAAAGGTAGAAGTTGTACAAACCCTTTTCA
GGACTTTCTATAAAAAAGCGCCATATCAAACCAGAAGGCTTTAAAGCATT
GTGATTTTAAAACATCTCTAACTTCACTAAAAGACCTCTTCAAATATGTT
CAAATCAGCCGTCTGACTTTTGCATCAAATCCAGTCAAATCTCTTgttat
caaaaaaagaagacactacaaAATCAAActgaatcaaaacaaatgaaatc
gAATGTGGTGTGCCGGGTGTGTCTTTCATCCTGTGAATAGAAGACACTGC
AAAGTCAATATGATATATTGTTCATTGTAAAATTATAAGACATTGTATGG
TCAAAACATTTGAGTGAGTAATGTCAAAATATTTCAGCTGAGAGACTTTT
TTTAAAACGCAGACAGTAGACAGCAACCCATTTTCAAGCACTTAGTATCC
TAAagtactaattgattttttgaaaaattctgagataccaccccctttca
gcagttagtaccctaaagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000785XLOC_000785Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001526-exon-sc0000010-1491911889:220013..220582TCONS_00001526-exon-sc0000010-1491911889:220013..220582Clytia hemisphaericaexon
TCONS_00001526-exon-sc0000010-1510915933:220013..220582TCONS_00001526-exon-sc0000010-1510915933:220013..220582Clytia hemisphaericaexon
TCONS_00001526-exon-sc0000010-1575043694:220013..220582TCONS_00001526-exon-sc0000010-1575043694:220013..220582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:220013..220582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.687934	0.0958349	0.778914	1.41523	0.132531	0.418911	0.379049	0.236574	0.0828155	0.307741	0.0995671	0	0.130721	0.203632	0	0	0	0	0	0.10932	0.0950191	0.139041	0.225363	0.204888	0	0.282509	0	0	0	0.111134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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