TCONS_00001525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001525
Unique NameTCONS_00001525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001525 ID=TCONS_00001525|Name=TCONS_00001525|organism=Clytia hemisphaerica|type=transcript|length=603bp
cttaattttttataaaagtaaaattttaaaccATTAAATACAATTAAATA
AATAcataaacaaaaagaataaataaCTTCTACTCTAATAGAAACCAGTC
TCTTAATGAGAAGGTtagaaataaaacatttttcgaGTGACAATTATCCA
GTCGTAAATCCCTTTTGTCTGGCTATTAACATATTTTTCATGCTTCGCTT
ACTATCTCTTTTTACAAGCAACTGGGAAATCTCCacataaattcaaaaca
aatattgtgTGCGAGTAAGTCTAATCTCCGACCTGATCCTCATTACTCTA
CTCACGCCACACATTCTCTCTAAAGACCGTGTGTCAGCTAATAATAAGGT
CTCTTTGATTATGATTGTCATCAAGATTTCGGATGAGTATTAAAACAAGG
TTTTGTGCCTGGTGATTGGCTGAAACCAAAATATCGTAACAAAATCAAAC
ACCATTCATAAAAATAAAGCAATAGAACtcagtcgctttcgctttcgatt
GTAGGAAAAGGGTGACGTTTGATTTAAATGTTTggaccattgacttccaa
gcccgaaaagctagactcgagactcctggatgggaaatgaagccacttaa
ttT
Run BLAST on NCBI

transcript from alignment at sc0000010:170445..171047

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001525 ID=TCONS_00001525|Name=TCONS_00001525|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000010:170445..171047 (Clytia hemisphaerica)
Aaattaagtggcttcatttcccatccaggagtctcgagtctagcttttcg
ggcttggaagtcaatggtccAAACATTTAAATCAAACGTCACCCTTTTCC
TACaatcgaaagcgaaagcgactgaGTTCTATTGCTTTATTTTTATGAAT
GGTGTTTGATTTTGTTACGATATTTTGGTTTCAGCCAATCACCAGGCACA
AAACCTTGTTTTAATACTCATCCGAAATCTTGATGACAATCATAATCAAA
GAGACCTTATTATTAGCTGACACACGGTCTTTAGAGAGAATGTGTGGCGT
GAGTAGAGTAATGAGGATCAGGTCGGAGATTAGACTTACTCGCAcacaat
atttgttttgaatttatgtGGAGATTTCCCAGTTGCTTGTAAAAAGAGAT
AGTAAGCGAAGCATGAAAAATATGTTAATAGCCAGACAAAAGGGATTTAC
GACTGGATAATTGTCACtcgaaaaatgttttatttctaACCTTCTCATTA
AGAGACTGGTTTCTATTAGAGTAGAAGttatttattctttttgtttatgT
ATTTATTTAATTGTATTTAATggtttaaaattttacttttataaaaaatt
aag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000784XLOC_000784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001525-exon-sc0000010-1491911889:170445..171047TCONS_00001525-exon-sc0000010-1491911889:170445..171047Clytia hemisphaericaexon
TCONS_00001525-exon-sc0000010-1510915933:170445..171047TCONS_00001525-exon-sc0000010-1510915933:170445..171047Clytia hemisphaericaexon
TCONS_00001525-exon-sc0000010-1575043694:170445..171047TCONS_00001525-exon-sc0000010-1575043694:170445..171047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:170445..171047 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192889	0.0901854	0.308531	0.201307	0.121431	0.287869	0	0.21676	0	0.190887	0.0917119	0.0606682	0.542248	0.373449	0.635671	0.455089	0.946351	1.76243	0.0957199	0.304825	3.22527	4.36513	0.736251	0.769531	2.90032	2.76103	1.39995	1.73503	0.305609	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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