TCONS_00001522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001522
Unique NameTCONS_00001522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001522 ID=TCONS_00001522|Name=TCONS_00001522|organism=Clytia hemisphaerica|type=transcript|length=754bp
GAAATTGGGCAACTTTCTCTAAAAAGGTCGAATTTGATAGGGCGTGTAta
gaagatttttgaaaaattgaaaaatgaagattttttcttctggttcaaca
tttttcaaaaactttttatccTTTAGATCGTTCTCCTCGGAaaaatcttt
ccaacggtgtataactttcTAATATAGCATAAATGGATACtgaaaaatgc
tcaaaaactacagtgtccacatacttttgagaaagatttttatctaatat
gaaattttcacaTCCTCTATATCCGCCGTTCTGTTTTTAATAACAatgaa
atttttatataaaaaagaacgatatatgataataaattttttccgtttaa
taaaatgtttgtttttataatatagaacaaattttttaagaataataata
taataataatatagtCTTTATTTTAAATTCGACAAAATAATAAGATAATA
AATTTTTGGTCATACATATCAATGAGACGCCCTTGATTAGAGTTTTTCTC
AATTACTTTCGGACAGTATCCAGTTCCTGACAATCTGTCCGGCAGATGAG
AGGAAAAGTTGTTTTgtccgaaaaaattttttttcgaaagttgTAAAACT
GAAAAGACTGTTATGTTAATTCTAAATTCGGGCTAAATCCTTCCAAATCA
AACTGGACCAAAAAGATCTTAGTATGAACAAAAATATTACAAGAAACAAT
AAACATTGAACAATCAACAGCATAAAAAGCTACGAAAAAATTTACGCAAA
AATA
Run BLAST on NCBI

transcript from alignment at sc0000010:68348..69101

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001522 ID=TCONS_00001522|Name=TCONS_00001522|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at sc0000010:68348..69101 (Clytia hemisphaerica)
TATTTTTGCGTAAATTTTTTCGTAGCTTTTTATGCTGTTGATTGTTCAAT
GTTTATTGTTTCTTGTAATATTTTTGTTCATACTAAGATCTTTTTGGTCC
AGTTTGATTTGGAAGGATTTAGCCCGAATTTAGAATTAACATAACAGTCT
TTTCAGTTTTAcaactttcgaaaaaaaattttttcggacAAAACAACTTT
TCCTCTCATCTGCCGGACAGATTGTCAGGAACTGGATACTGTCCGAAAGT
AATTGAGAAAAACTCTAATCAAGGGCGTCTCATTGATATGTATGACCAAA
AATTTATTATCTTATTATTTTGTCGAATTTAAAATAAAGactatattatt
attatattattattcttaaaaaatttgttctatattataaaaacaaacat
tttattaaacggaaaaaatttattatcatatatcgttcttttttatataa
aaatttcatTGTTATTAAAAACAGAACGGCGGATATAGAGGAtgtgaaaa
tttcatattagataaaaatctttctcaaaagtatgtggacactgtagttt
ttgagcatttttcaGTATCCATTTATGCTATATTAgaaagttatacaccg
ttggaaagattttTCCGAGGAGAACGATCTAAAggataaaaagtttttga
aaaatgttgaaccagaagaaaaaatcttcatttttcaatttttcaaaaat
cttctaTACACGCCCTATCAAATTCGACCTTTTTAGAGAAAGTTGCCCAA
TTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000781XLOC_000781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001522-exon-sc0000010-1491911889:68348..69101TCONS_00001522-exon-sc0000010-1491911889:68348..69101Clytia hemisphaericaexon
TCONS_00001522-exon-sc0000010-1510915933:68348..69101TCONS_00001522-exon-sc0000010-1510915933:68348..69101Clytia hemisphaericaexon
TCONS_00001522-exon-sc0000010-1575043694:68348..69101TCONS_00001522-exon-sc0000010-1575043694:68348..69101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:68348..69101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.380878	0.0737059	0	0.614507	0.554961	0.585845	0.391758	0.493702	0.747425	0.329759	0.606957	0.995758	0.449611	0.591426	0.674358	0.195472	0.851496	1.38399	1.95513	1.95112	2.02617	0.373193	1.49286	1.32794	1.49704	4.64155	3.04836	6.28595	5.44741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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