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TCONS_00001518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001518
Unique NameTCONS_00001518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001518 ID=TCONS_00001518|Name=TCONS_00001518|organism=Clytia hemisphaerica|type=transcript|length=1788bp
AGCAAGACGACTTAAGAGTTGAGAAAAAAGCACtctcaaaaaaagttgta
aTATTTAGATCACTAGCAGACAGAAAATCAAGGTCATTATTCAAAGTCAG
TGCACCAATTcacaaaatgattttaaattttcacagaCAAGTCACAATAA
AACTCACACATttgtttgatgaaaaagaatGAATATAAATTAAACAGAAA
CATTTCTAAACTTTAACATTAACGTTTGAAATAAATAAAGATAATGATTG
TAAAAAACGAGAACctataaaatatacaaaatattatgtattaaacatta
aaattgAATTCATCATCTGGCCGCAAGtggtttttgaaaactttttcttg
aaaacaaacttAGTAACGTTGACAATTTTATCTTCAACACTATCTTCAAA
AGAATATTCTTTAAATGCTTCATATATTGCATGAAATTCAGGTTGTACTT
TCggtttctgaaagcttaatcgACAGCCATGTAAAATTCCAATACCATTC
TTGATAGCCCGATGACAATGATTGCCCAAATAACAAAAGTCAGGTCTGTA
ATTCCATTCACAGGGTAGGGTATACAAGAATTTTGGATGAGCATTAAGAA
ATATGTTAAGAATGTCTTGGTCACCATATCGTATCAATAGTCGGTTATTC
GTGTATATTGATATCAATTCTTTCTCCCAGTTGAGCCTTCTCAATCTGGT
TAGATTCATCAACATAACACCACTATTTACACCATAAGGTTGTACATAAG
GGTGGCGTGCTTTCTTAGGACCCTTTGAATACCAACAAAACTCTTGACCT
TTTCCACATTCTTGTGCTAACCCAACAGCTTGTCTCTTATCAAAATCATT
AAAGAGATTCCACAAATCTTCGGGtggtttcaaaaacaaaatatcgGTGT
CTATGTAGATAACAGAGTCTGTGGTTGGTAGAAGTTGTGCTAGAAATAAT
CTCAATGAAGCACATGGTTTAAACAACTCTTCCCAATCGACTTTCTCATC
ATCTTCAAGCATATCAGGATATTTTGCAGGATAAATATAATACATCATCC
ACCTTTCTTGATAGGATGGCCATGTCATTAACTCATTATCTAATTTCTTA
TCGTCCGTTTTGTCAGTAAATATATGAAAATGTACATTATATTTAGTAAA
CAATGTTGCTGATTTCAAAGCAGTGATAGCTTGTCCAACTCGGTCTTTAC
AAGCAACAACAACAATGTTGAGAATAGCAGCATTGTGGAGTGACACCTCT
TCGATATTTTCTGTCTCTGATTCACGAAACCTTCTTCTATTCTTAGAAGG
TCCATCTCCAAACATCCGTCGTAGTTCTCTAAACGGTTCAGGCAACTCGA
ACCGATGATTCAACAACTTATAATAAATACCAATCCATAATAAAACAACA
CCAGTGATAATTAGCAAAAAATAAAACCGTTTCCTGGATGAAGCACACAG
AATACCACCACCTTTTGACTTTGGCTGTTGCATTTGATTAGGTGGACATT
CGTCAGGAGGTATTTCATCTTGTTTAACAACTTCATATTTAGTAGCTGAT
GGATTTTCACTAAGACGCAGCTTTCTCTTCATACTTTCCAAAATTACCtc
taaaaacatttcttttcataatttttttgagCTAAAATATCAAATGTTTT
ATTATATTGATTTGTATCTTACAGTTTGGGTTTGTCTGGCTCTTAAAGCA
ATTTAACTTAGTACTACCAGAAAGACCGATCAGCTAAAGACCAACCCAAT
AGATGATTTGGTTTTTTATCAATCCTGTTCTTTTACTA
Run BLAST on NCBI

protein sequence of TCONS_00001518-protein

>TCONS_00001518-protein ID=TCONS_00001518-protein|Name=TCONS_00001518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MFLEVILESMKRKLRLSENPSATKYEVVKQDEIPPDECPPNQMQQPKSKG
GGILCASSRKRFYFLLIITGVVLLWIGIYYKLLNHRFELPEPFRELRRMF
GDGPSKNRRRFRESETENIEEVSLHNAAILNIVVVACKDRVGQAITALKS
ATLFTKYNVHFHIFTDKTDDKKLDNELMTWPSYQERWMMYYIYPAKYPDM
LEDDEKVDWEELFKPCASLRLFLAQLLPTTDSVIYIDTDILFLKPPEDLW
NLFNDFDKRQAVGLAQECGKGQEFCWYSKGPKKARHPYVQPYGVNSGVML
MNLTRLRRLNWEKELISIYTNNRLLIRYGDQDILNIFLNAHPKFLYTLPC
EWNYRPDFCYLGNHCHRAIKNGIGILHGCRLSFQKPKVQPEFHAIYEAFK
EYSFEDSVEDKIVNVTKFVFKKKFSKTTCGQMMNSILMFNT
Run BLAST on NCBI

transcript from alignment at sc0000010:16590..18377

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001518 ID=TCONS_00001518|Name=TCONS_00001518|organism=Clytia hemisphaerica|type=transcript|length=1788bp|location=Sequence derived from alignment at sc0000010:16590..18377 (Clytia hemisphaerica)
TAGTAAAAGAACAGGATTGATAAAAAACCAAATCATCTATTGGGTTGGTC TTTAGCTGATCGGTCTTTCTGGTAGTACTAAGTTAAATTGCTTTAAGAGC CAGACAAACCCAAACTGTAAGATACAAATCAATATAATAAAACATTTGAT ATTTTAGctcaaaaaaattatgaaaagaaatgtttttagaGGTAATTTTG GAAAGTATGAAGAGAAAGCTGCGTCTTAGTGAAAATCCATCAGCTACTAA ATATGAAGTTGTTAAACAAGATGAAATACCTCCTGACGAATGTCCACCTA ATCAAATGCAACAGCCAAAGTCAAAAGGTGGTGGTATTCTGTGTGCTTCA TCCAGGAAACGGTTTTATTTTTTGCTAATTATCACTGGTGTTGTTTTATT ATGGATTGGTATTTATTATAAGTTGTTGAATCATCGGTTCGAGTTGCCTG AACCGTTTAGAGAACTACGACGGATGTTTGGAGATGGACCTTCTAAGAAT AGAAGAAGGTTTCGTGAATCAGAGACAGAAAATATCGAAGAGGTGTCACT CCACAATGCTGCTATTCTCAACATTGTTGTTGTTGCTTGTAAAGACCGAG TTGGACAAGCTATCACTGCTTTGAAATCAGCAACATTGTTTACTAAATAT AATGTACATTTTCATATATTTACTGACAAAACGGACGATAAGAAATTAGA TAATGAGTTAATGACATGGCCATCCTATCAAGAAAGGTGGATGATGTATT ATATTTATCCTGCAAAATATCCTGATATGCTTGAAGATGATGAGAAAGTC GATTGGGAAGAGTTGTTTAAACCATGTGCTTCATTGAGATTATTTCTAGC ACAACTTCTACCAACCACAGACTCTGTTATCTACATAGACACcgatattt tgtttttgaaaccaCCCGAAGATTTGTGGAATCTCTTTAATGATTTTGAT AAGAGACAAGCTGTTGGGTTAGCACAAGAATGTGGAAAAGGTCAAGAGTT TTGTTGGTATTCAAAGGGTCCTAAGAAAGCACGCCACCCTTATGTACAAC CTTATGGTGTAAATAGTGGTGTTATGTTGATGAATCTAACCAGATTGAGA AGGCTCAACTGGGAGAAAGAATTGATATCAATATACACGAATAACCGACT ATTGATACGATATGGTGACCAAGACATTCTTAACATATTTCTTAATGCTC ATCCAAAATTCTTGTATACCCTACCCTGTGAATGGAATTACAGACCTGAC TTTTGTTATTTGGGCAATCATTGTCATCGGGCTATCAAGAATGGTATTGG AATTTTACATGGCTGTcgattaagctttcagaaaccGAAAGTACAACCTG AATTTCATGCAATATATGAAGCATTTAAAGAATATTCTTTTGAAGATAGT GTTGAAGATAAAATTGTCAACGTTACTaagtttgttttcaagaaaaagtt ttcaaaaaccaCTTGCGGCCAGATGATGAATTcaattttaatgtttaata cataatattttgtatattttatagGTTCTCGTTTTTTACAATCATTATCT TTATTTATTTCAAACGTTAATGTTAAAGTTTAGAAATGTTTCTGTTTAAT TTATATTCattctttttcatcaaacaaATGTGTGAGTTTTATTGTGACTT GtctgtgaaaatttaaaatcattttgtgAATTGGTGCACTGACTTTGAAT AATGACCTTGATTTTCTGTCTGCTAGTGATCTAAATAttacaactttttt tgagaGTGCTTTTTTCTCAACTCTTAAGTCGTCTTGCT

Coding sequence (CDS) from alignment at sc0000010:16590..18377

>TCONS_00001518 ID=TCONS_00001518|Name=TCONS_00001518|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at sc0000010:16590..18377 (Clytia hemisphaerica)
atgtttttagaGGTAATTTTGGAAAGTATGAAGAGAAAGCTGCGTCTTAG
TGAAAATCCATCAGCTACTAAATATGAAGTTGTTAAACAAGATGAAATAC
CTCCTGACGAATGTCCACCTAATCAAATGCAACAGCCAAAGTCAAAAGGT
GGTGGTATTCTGTGTGCTTCATCCAGGAAACGGTTTTATTTTTTGCTAAT
TATCACTGGTGTTGTTTTATTATGGATTGGTATTTATTATAAGTTGTTGA
ATCATCGGTTCGAGTTGCCTGAACCGTTTAGAGAACTACGACGGATGTTT
GGAGATGGACCTTCTAAGAATAGAAGAAGGTTTCGTGAATCAGAGACAGA
AAATATCGAAGAGGTGTCACTCCACAATGCTGCTATTCTCAACATTGTTG
TTGTTGCTTGTAAAGACCGAGTTGGACAAGCTATCACTGCTTTGAAATCA
GCAACATTGTTTACTAAATATAATGTACATTTTCATATATTTACTGACAA
AACGGACGATAAGAAATTAGATAATGAGTTAATGACATGGCCATCCTATC
AAGAAAGGTGGATGATGTATTATATTTATCCTGCAAAATATCCTGATATG
CTTGAAGATGATGAGAAAGTCGATTGGGAAGAGTTGTTTAAACCATGTGC
TTCATTGAGATTATTTCTAGCACAACTTCTACCAACCACAGACTCTGTTA
TCTACATAGACACcgatattttgtttttgaaaccaCCCGAAGATTTGTGG
AATCTCTTTAATGATTTTGATAAGAGACAAGCTGTTGGGTTAGCACAAGA
ATGTGGAAAAGGTCAAGAGTTTTGTTGGTATTCAAAGGGTCCTAAGAAAG
CACGCCACCCTTATGTACAACCTTATGGTGTAAATAGTGGTGTTATGTTG
ATGAATCTAACCAGATTGAGAAGGCTCAACTGGGAGAAAGAATTGATATC
AATATACACGAATAACCGACTATTGATACGATATGGTGACCAAGACATTC
TTAACATATTTCTTAATGCTCATCCAAAATTCTTGTATACCCTACCCTGT
GAATGGAATTACAGACCTGACTTTTGTTATTTGGGCAATCATTGTCATCG
GGCTATCAAGAATGGTATTGGAATTTTACATGGCTGTcgattaagctttc
agaaaccGAAAGTACAACCTGAATTTCATGCAATATATGAAGCATTTAAA
GAATATTCTTTTGAAGATAGTGTTGAAGATAAAATTGTCAACGTTACTaa
gtttgttttcaagaaaaagttttcaaaaaccaCTTGCGGCCAGATGATGA
ATTcaattttaatgtttaatacataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000777XLOC_000777Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001518-proteinTCONS_00001518-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001518-exon-sc0000010-1491911889:16590..18377TCONS_00001518-exon-sc0000010-1491911889:16590..18377Clytia hemisphaericaexon
TCONS_00001518-exon-sc0000010-1510915933:16590..18377TCONS_00001518-exon-sc0000010-1510915933:16590..18377Clytia hemisphaericaexon
TCONS_00001518-exon-sc0000010-1575043694:16590..18377TCONS_00001518-exon-sc0000010-1575043694:16590..18377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:16590..18377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.6748 42.2787 32.1734 27.8952 9.7566 6.91687 9.09934 8.83743 6.66622 7.98158 7.31498 4.31122 6.80715 4.70212 4.52646 4.68319 8.5368 9.59603 4.37086 5.52354 8.8683 7.94331 30.089 28.8046 11.5551 8.56877 9.76535 6.50002 18.8274 18.4563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR002495Glyco_trans_8
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
BLAST of TCONS_00001518 vs. Swiss-Prot (Human)
Match: GXLT2 (Glucoside xylosyltransferase 2 OS=Homo sapiens GN=GXYLT2 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.485e-58
Identity = 115/290 (39.66%), Postives = 169/290 (58.28%), Query Frame = -3
Query:  386 LNIVVVACKDRVGQAITALKSATLFTKYNVHFHIFTDKTDDKKLDNELMTWPSYQERWMMYYIYPAKYPDMLEDDEKVDWEELFKPCASLRLFLAQLLPTTDSVIYIDTDILFLKPPEDLWNLFNDFDKRQAVGLAQECGKGQEFCWYSKGPKKARHPYVQPYGVNSGVXXXXXXXXXXX-----------NWEKELISIYTNNRLLIRYGDQDILNIFLNAHPKFLYTLPCEWNYRPDFCYLGNHCHRAIKNGIGILHGCRLSFQKPKVQPEFHAIYEAFKEYSFEDSV 1222
            +++ VVAC +R+ + +  LKSA LF+   + FHIFT+ +   + D +L  WP    +   + IYP  +          +W++LFKPCA+ RLFL  +L   DS++Y+DTD+LFL+P +D+W L   F+  Q   +A E  +  +  WYS+    ARHP+    GVNSGVMLMNLTR+R              WE  L  +Y   +  I +GDQD+LNI    +P+ LY  PC+WNYRPD C  G++C  A   G+ +LHG R  +   K QP F A+YEA +++ F+D++
Sbjct:  110 IHLAVVACGNRLEETLVMLKSAVLFSHRKIQFHIFTEDSLKPEFDKQLRQWPDSYTKKFEHRIYPITF----SVGNPQEWKKLFKPCAAQRLFLPVILKDVDSLLYVDTDVLFLRPVDDIWKLLRLFNSTQLAAMAPE-HEIPKIGWYSRF---ARHPFYGSAGVNSGVMLMNLTRIRSTQFKNSMIPTGLAWEDMLYPLYQKYKNAITWGDQDLLNIIFYFNPECLYVFPCQWNYRPDHCMYGSNCREAEHEGVSVLHGNRGVYHDDK-QPTFRALYEAIRDFPFQDNL 390          
The following BLAST results are available for this feature:
BLAST of TCONS_00001518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GXLT21.485e-5839.66Glucoside xylosyltransferase 2 OS=Homo sapiens GN=... [more]
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