TCONS_00001517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001517
Unique NameTCONS_00001517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001517 ID=TCONS_00001517|Name=TCONS_00001517|organism=Clytia hemisphaerica|type=transcript|length=1284bp
aAGTGGTAGAGGAAAAGCCTCCTAGTTCTGAACCActccctaaaagccta
gtatatgaatagggttaatgtTTTATCAGAGCAGAAAATTTCTTTAACCT
TCATGAACGCTTTCATCCAATCCAAAGATATATTTGAGCTGTCTCGGGGC
AAGTCTTTTTTACCACTTTTACCCTATCAGTCTTTCTAAGTACtcaaaat
tgtaaacaaagtcACATAATTGACATTGTTTTGTCAAATAAATTGTATTT
CAAAGTCAGTAAAAACATGAAGAAGTAATTGAACACAGAAACACAGACAA
ATTAATAACGACTATGAATGTGTTCTTTTTAATAAGATGATTTTTGTTTA
ATCTTTTAGTTCagtatttataaatttttaacaagtttGTCATTTCCTCA
GACGAACTATAATCAATAGGTAGTTTGGACTTGTTATCTTTTACAGTCTG
TATTTCAGAATCCATTTTTAACAGGTACCTAACAACATCAGTATGGTTCC
TTTGTACAGCTTTATGCAAAGAAGTCTGTCCATCGACATTCTGTTGCCTT
ATTGATGCCCCTGCTGAAATTAAAAGTCTCACAATATCTAAATTCCCAAC
ATAAACTGCTCTGTGTAGTGGGGTATCTTTACCAGCTTTTGTAACACAGT
TAACACAAGCTCCATAACCAATCAATAAATTGACTATCTCATTATGTCCG
TTACGAGAAGCGTAATGTAAAGCTGTATAACCTGATGAGTCAACACTATT
TATATCAGTTCCATTTAAGTATTGtcttttaattttgtttatatcattGT
CAATAGCCGCTTGCCAGATTCCACGTTGAAATTCCATTTCATCAAGTGAT
TGGTCATAGGGTGTCCCTTTTTTGCTATGTTTACATGAAGAGCATGCATC
AAATTGCTCcatgttgattttattttgctcaaaatttaaattcaaaaaat
tattttaaatttgcctTATTTGGACTTTGGACACGTAAGAAAATGATTTT
ATATGAGTTTTATGAGAAATTCAAAGTTTTATGAGAAATTCAAAGTTTTA
TCGCGTATCTGTGACAAACTTAAAATTCTGAGAAAAATTCggtgaaaata
ttgaaaacttaCTATGGGTCAAAAATGGGTTAAAGATGTAGGGGAGTTCA
GGGCAGCGGGTACCAGATTTGGCAATTCTGGCAATTTTTCCCCTGATTTC
TGTCAAACCATCTGAAAATAATCTAAATTCTCCTCCCGAAAAATCCATTG
GAATTTAAGGTTTTGTCCaaagttttgcaaattt
Run BLAST on NCBI

protein sequence of TCONS_00001517-protein

>TCONS_00001517-protein ID=TCONS_00001517-protein|Name=TCONS_00001517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MEQFDACSSCKHSKKGTPYDQSLDEMEFQRGIWQAAIDNDINKIKRQYLN
GTDINSVDSSGYTALHYASRNGHNEIVNLLIGYGACVNCVTKAGKDTPLH
RAVYVGNLDIVRLLISAGASIRQQNVDGQTSLHKAVQRNHTDVVRYLLKM
DSEIQTVKDNKSKLPIDYSSSEEMTNLLKIYKY
Run BLAST on NCBI

transcript from alignment at sc0000010:15112..16395

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001517 ID=TCONS_00001517|Name=TCONS_00001517|organism=Clytia hemisphaerica|type=transcript|length=1284bp|location=Sequence derived from alignment at sc0000010:15112..16395 (Clytia hemisphaerica)
aaatttgcaaaactttGGACAAAACCTTAAATTCCAATGGATTTTTCGGG
AGGAGAATTTAGATTATTTTCAGATGGTTTGACAGAAATCAGGGGAAAAA
TTGCCAGAATTGCCAAATCTGGTACCCGCTGCCCTGAACTCCCCTACATC
TTTAACCCATTTTTGACCCATAGtaagttttcaatattttcaccGAATTT
TTCTCAGAATTTTAAGTTTGTCACAGATACGCGATAAAACTTTGAATTTC
TCATAAAACTTTGAATTTCTCATAAAACTCATATAAAATCATTTTCTTAC
GTGTCCAAAGTCCAAATAaggcaaatttaaaataattttttgaatttaaa
ttttgagcaaaataaaatcaacatgGAGCAATTTGATGCATGCTCTTCAT
GTAAACATAGCAAAAAAGGGACACCCTATGACCAATCACTTGATGAAATG
GAATTTCAACGTGGAATCTGGCAAGCGGCTATTGACaatgatataaacaa
aattaaaagaCAATACTTAAATGGAACTGATATAAATAGTGTTGACTCAT
CAGGTTATACAGCTTTACATTACGCTTCTCGTAACGGACATAATGAGATA
GTCAATTTATTGATTGGTTATGGAGCTTGTGTTAACTGTGTTACAAAAGC
TGGTAAAGATACCCCACTACACAGAGCAGTTTATGTTGGGAATTTAGATA
TTGTGAGACTTTTAATTTCAGCAGGGGCATCAATAAGGCAACAGAATGTC
GATGGACAGACTTCTTTGCATAAAGCTGTACAAAGGAACCATACTGATGT
TGTTAGGTACCTGTTAAAAATGGATTCTGAAATACAGACTGTAAAAGATA
ACAAGTCCAAACTACCTATTGATTATAGTTCGTCTGAGGAAATGACaaac
ttgttaaaaatttataaatactGAACTAAAAGATTAAACAAAAATCATCT
TATTAAAAAGAACACATTCATAGTCGTTATTAATTTGTCTGTGTTTCTGT
GTTCAATTACTTCTTCATGTTTTTACTGACTTTGAAATACAATTTATTTG
ACAAAACAATGTCAATTATGTgactttgtttacaattttgaGTACTTAGA
AAGACTGATAGGGTAAAAGTGGTAAAAAAGACTTGCCCCGAGACAGCTCA
AATATATCTTTGGATTGGATGAAAGCGTTCATGAAGGTTAAAGAAATTTT
CTGCTCTGATAAAacattaaccctattcatatactaggcttttagggagT
GGTTCAGAACTAGGAGGCTTTTCCTCTACCACTt

Coding sequence (CDS) from alignment at sc0000010:15112..16395

>TCONS_00001517 ID=TCONS_00001517|Name=TCONS_00001517|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000010:15112..16395 (Clytia hemisphaerica)
atgGAGCAATTTGATGCATGCTCTTCATGTAAACATAGCAAAAAAGGGAC
ACCCTATGACCAATCACTTGATGAAATGGAATTTCAACGTGGAATCTGGC
AAGCGGCTATTGACaatgatataaacaaaattaaaagaCAATACTTAAAT
GGAACTGATATAAATAGTGTTGACTCATCAGGTTATACAGCTTTACATTA
CGCTTCTCGTAACGGACATAATGAGATAGTCAATTTATTGATTGGTTATG
GAGCTTGTGTTAACTGTGTTACAAAAGCTGGTAAAGATACCCCACTACAC
AGAGCAGTTTATGTTGGGAATTTAGATATTGTGAGACTTTTAATTTCAGC
AGGGGCATCAATAAGGCAACAGAATGTCGATGGACAGACTTCTTTGCATA
AAGCTGTACAAAGGAACCATACTGATGTTGTTAGGTACCTGTTAAAAATG
GATTCTGAAATACAGACTGTAAAAGATAACAAGTCCAAACTACCTATTGA
TTATAGTTCGTCTGAGGAAATGACaaacttgttaaaaatttataaatact
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000776XLOC_000776Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001517-proteinTCONS_00001517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001517-exon-sc0000010-1491911889:15112..16395TCONS_00001517-exon-sc0000010-1491911889:15112..16395Clytia hemisphaericaexon
TCONS_00001517-exon-sc0000010-1510915933:15112..16395TCONS_00001517-exon-sc0000010-1510915933:15112..16395Clytia hemisphaericaexon
TCONS_00001517-exon-sc0000010-1575043694:15112..16395TCONS_00001517-exon-sc0000010-1575043694:15112..16395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:15112..16395 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.673	12.6156	4.14776	3.6558	4.36157	3.16522	4.15814	3.09835	2.75325	1.7224	1.83898	1.8243	2.72167	1.9603	1.98643	2.73507	3.66668	3.32654	1.64887	1.54187	3.19087	2.8949	16.7632	14.0017	6.59061	5.15462	2.80569	2.36647	7.39931	9.36743
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00001517 vs. Swiss-Prot (Human)
Match: ANR39 (Ankyrin repeat domain-containing protein 39 OS=Homo sapiens GN=ANKRD39 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.703e-38
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = -1 
Query:  412 CKHSKKGTPYDQSLDEMEFQRGIWQAAIDNDINKIKRQYLNGTDINSVDSSGYTALHYASRNGHNEIVNLLIGYGACVNCVTKAGKDTPLHRAVYVGNLDIVRLLISAGASIRQQNVDGQTSLHKAVQRNHTDVVRYLLKMDSEIQTVKDNKSKLPID 885
            C H        Q+L+EM+F+RGIW AA++ D+ ++K       D +  DS+GYTALHYASRNGH  +   L+  GA  +  T  G  T LHRA Y G+ +I RLL+S G++ R  + DG TSLHKA +R H D+   LL+    ++ ++D K++L  D
Sbjct:   13 CSHPSAVLGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGA-TALHRASYCGHTEIARLLLSHGSNPRVVDDDGMTSLHKAAERGHGDICSLLLQHSPALKAIRDRKARLACD 169
The following BLAST results are available for this feature:
BLAST of TCONS_00001517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR393.703e-3842.41Ankyrin repeat domain-containing protein 39 OS=Hom... [more]
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