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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001516 ID=TCONS_00001516|Name=TCONS_00001516|organism=Clytia hemisphaerica|type=transcript|length=1889bp
TTTTGAACGATCAGTTTTGAGAATAAACATTGACTGGGTTTGTCTCACCA
GATAATTTTCCAGATTCGCGAAGAAGTTTACAATGTCTGGCAACGAAACT
CTGTATTCGAGCAAAGAGAAGATAACAAGTCCAGTGAACAGCCTTTTACT
TCAACAACAGCAATGTTACCAGAAAGATGCTGGAGATGATGAAGAATCAA
CTCTGGAGAAAAATGAGCACAGTGAAGCAAATGAAAGCTCTTTGAGCTGG
GATCATCTCCATAAGGTCTTTGATCAAGGATCTGAAAAAATGAAGCATTT
GTTCGGGGAAACGGTAAACTCtctaaaagaaaaatacaataaaaccaAGT
CGAAATTAAAGCCTCGGAAAGATGCAGAAATCCCGGAGACTGATGCAGAG
GGAAATAAGAAACAGAAAGATATTCCATTGCTACAAAAGATGAAAGAGAA
ACTATCGAAACAAACACCAAAAGAATCAAAACCACGTATCTTCGTCACCA
GATCATCCAAAGAATTTGCTCAAATCCAGATCCAAGAACAGTTTGCAAAT
CTGAAGACAACCTCACAATACATTATACCTTTGTTGGGACCCTGTATCGT
TGCATTACCATATGCATTGAAACAATCTGGTTTGATTCTTGGAGTATTGC
TGATATTCTTAATCTCAATGTCCATGGACTATGCTGAATGTTTGATGAAG
CAATGTATGTCATCAACCATTGATAAACAAAACAATATTGCAATGCTTGG
CAAACAATTTTTCGGACGTTTTGGATACTTCGTCTACTTTGGAGCACCTT
ATTTACTTCATTTCTGTATCCTCTTCGCTTATTTGATCATCCTTGATTAA
AAGTGAGAAGCTGATTTCGAAGATTTCTTCCTTGGCCATTGTTCCAGGTA
CTGTCCTTATGATATTGATTGTTCTCCGAGTGTTCACGCTGGGCGAAAAG
ATTCCACACGTGTCCGAAATCTATCATCCGTTCAAATACCTGGGCACGAA
TATTATCCAATCAATTGCCGTGGTCACTTTCACCTTCATATGTCAACACA
ATATTCGTGCGACTTACATGCAGCCACACGTAACCAACAATTATGACGTC
AGCAAGCCAGTAGATATGGTTGCCTCGTTTACTTTGGTTGTAAACCTTTT
AATCTCAGGTGCAGGATATACCACGTTCAATGTTTTCACACAGGGAAACA
TTCTCGAAAATTATTGTGAGGAAGATTTTATAGCTggtttaactaaaaca
tttttcatgatattcatcATATTTCTATTCCCTATTGAATGTTTTAACAT
TCGTTTGATGACAGATGAGCTAATCATAGTGCATCAcagatttaaaaaca
ttttccatttTGTTGCAACTTTTGTGATTCTATTGCCAATCTTCATTGGT
TCCCTTTTCATAGACTGTCTACCACTTATTCTTGAGATGGCTGGAGTTGT
ATTGGCAATTCCTCTGATCTTCATTCTTCCATCCGTTATTTTCTTAAGAA
GATTCCCTGGAAATGTGTTAGCATCTGATAAGCTGCCATGTTTTCTGTTT
ATGTGTCTGGGAATCACCTTTAGTGTGATTGGTTTAGCCGTAACAATGTC
ATCCAATCATAATTGTATCCATTCGAACAATCTGTTACCGTACTGTAATG
GATCTAGTGAGCTTGTTGGACCACTGATAACATTAATGTCGTTGAATACG
AGTTTTACGGACGACGATATCTTAGCAATGAACACCAACGTGAATATATC
TCGACTTGAACAATACGGGTTTGAAAACCTTACTGATGTTGTGAATGCAT
ATTTAGCTTGagaagaaaaaatatgtttttgttgatgaaaatgtacaatt
ttgataatttgtttttgttttcatcagTTTCTTTATGCA Run BLAST on NCBI protein sequence of TCONS_00001516-protein >TCONS_00001516-protein ID=TCONS_00001516-protein|Name=TCONS_00001516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MILIVLRVFTLGEKIPHVSEIYHPFKYLGTNIIQSIAVVTFTFICQHNIR
ATYMQPHVTNNYDVSKPVDMVASFTLVVNLLISGAGYTTFNVFTQGNILE
NYCEEDFIAGLTKTFFMIFIIFLFPIECFNIRLMTDELIIVHHRFKNIFH
FVATFVILLPIFIGSLFIDCLPLILEMAGVVLAIPLIFILPSVIFLRRFP
GNVLASDKLPCFLFMCLGITFSVIGLAVTMSSNHNCIHSNNLLPYCNGSS
ELVGPLITLMSLNTSFTDDDILAMNTNVNISRLEQYGFENLTDVVNAYLA Run BLAST on NCBI transcript from alignment at sc0000010:1171439..1173443- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001516 ID=TCONS_00001516|Name=TCONS_00001516|organism=Clytia hemisphaerica|type=transcript|length=2005bp|location=Sequence derived from alignment at sc0000010:1171439..1173443- (Clytia hemisphaerica)
TTTTGAACGATCAGTTTTGAGAATAAACATTGACTGGGTTTGTCTCACCA
GATAATTTTCCAGATTCGCGAAGAAGTTTACAATGTCTGGCAACGAAACT
CTGTATTCGAGCAAAGAGAAGATAACAAGTCCAGTGAACAGCCTTTTACT
TCAACAACAGCAATGTTACCAGAAAGATGCTGGAGATGATGAAGAATCAA
CTCTGGAGAAAAATGAGCACAGTGAAGCAAATGAAAGCTCTTTGAGCTGG
GATCATCTCCATAAGGTCTTTGATCAAGGATCTGAAAAAATGAAGCATTT
GTTCGGGGAAACGGTAAACTCTCTAAAAGAAAAATACAATAAAACCAAGT
CGAAATTAAAGCCTCGGAAAGATGCAGAAATCCCGGAGACTGATGCAGAG
GGAAATAAGAAACAGAAAGATATTCCATTGCTACAAAAGATGAAAGAGAA
ACTATCGAAACAAACACCAAAAGAATCAAAACCACGTATCTTCGTCACCA
GATCATCCAAAGAATTTGCTCAAATCCAGATCCAAGAACAGTTTGCAAAT
CTGAAGACAACCTCACAATACATTATACCTTTGTTGGGACCCTGTATCGT
TGCATTACCATATGCATTGAAACAATCTGGTTTGATTCTTGGAGTATTGC
TGATATTCTTAATCTCAATGTCCATGGACTATGCTGAATGTTTGATGAAG
CAATGTATGTCATCAACCATTGATAAACAAAACAATATTGCAATGCTTGG
CAAACAATTTTTCGGACGTTTTGGATACTTCGTCTACTTTGGAGCACCTT
ATTTACTTCATTTCTGTATCCTCTTCGCTTATTTGATCATCCTTGGAGAT
GCCAGTACTAAATGTATCAATACCTTTGTATCAATGTTGACCATTGAGTT
TGCATTTCATCGCAACATTGTTTTATTGCTTGTTTTCTTATTGGTAATAC
TGACATCCTTGATTAAAAGTGAGAAGCTGATTTCGAAGATTTCTTCCTTG
GCCATTGTTCCAGGTACTGTCCTTATGATATTGATTGTTCTCCGAGTGTT
CACGCTGGGCGAAAAGATTCCACACGTGTCCGAAATCTATCATCCGTTCA
AATACCTGGGCACGAATATTATCCAATCAATTGCCGTGGTCACTTTCACC
TTCATATGTCAACACAATATTCGTGCGACTTACATGCAGCCACACGTAAC
CAACAATTATGACGTCAGCAAGCCAGTAGATATGGTTGCCTCGTTTACTT
TGGTTGTAAACCTTTTAATCTCAGGTGCAGGATATACCACGTTCAATGTT
TTCACACAGGGAAACATTCTCGAAAATTATTGTGAGGAAGATTTTATAGC
TGGTTTAACTAAAACATTTTTCATGATATTCATCATATTTCTATTCCCTA
TTGAATGTTTTAACATTCGTTTGATGACAGATGAGCTAATCATAGTGCAT
CACAGATTTAAAAACATTTTCCATTTTGTTGCAACTTTTGTGATTCTATT
GCCAATCTTCATTGGTTCCCTTTTCATAGACTGTCTACCACTTATTCTTG
AGATGGCTGGAGTTGTATTGGCAATTCCTCTGATCTTCATTCTTCCATCC
GTTATTTTCTTAAGAAGATTCCCTGGAAATGTGTTAGCATCTGATAAGCT
GCCATGTTTTCTGTTTATGTGTCTGGGAATCACCTTTAGTGTGATTGGTT
TAGCCGTAACAATGTCATCCAATCATAATTGTATCCATTCGAACAATCTG
TTACCGTACTGTAATGGATCTAGTGAGCTTGTTGGACCACTGATAACATT
AATGTCGTTGAATACGAGTTTTACGGACGACGATATCTTAGCAATGAACA
CCAACGTGAATATATCTCGACTTGAACAATACGGGTTTGAAAACCTTACT
GATGTTGTGAATGCATATTTAGCTTGAGAAGAAAAAATATGTTTTTGTTG
ATGAAAATGTACAATTTTGATAATTTGTTTTTGTTTTCATCAGTTTCTTT
ATGCA Coding sequence (CDS) from alignment at sc0000010:1171439..1173443- >TCONS_00001516 ID=TCONS_00001516|Name=TCONS_00001516|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000010:1171439..1173443- (Clytia hemisphaerica)
ATGATATTGATTGTTCTCCGAGTGTTCACGCTGGGCGAAAAGATTCCACA
CGTGTCCGAAATCTATCATCCGTTCAAATACCTGGGCACGAATATTATCC
AATCAATTGCCGTGGTCACTTTCACCTTCATATGTCAACACAATATTCGT
GCGACTTACATGCAGCCACACGTAACCAACAATTATGACGTCAGCAAGCC
AGTAGATATGGTTGCCTCGTTTACTTTGGTTGTAAACCTTTTAATCTCAG
GTGCAGGATATACCACGTTCAATGTTTTCACACAGGGAAACATTCTCGAA
AATTATTGTGAGGAAGATTTTATAGCTGGTTTAACTAAAACATTTTTCAT
GATATTCATCATATTTCTATTCCCTATTGAATGTTTTAACATTCGTTTGA
TGACAGATGAGCTAATCATAGTGCATCACAGATTTAAAAACATTTTCCAT
TTTGTTGCAACTTTTGTGATTCTATTGCCAATCTTCATTGGTTCCCTTTT
CATAGACTGTCTACCACTTATTCTTGAGATGGCTGGAGTTGTATTGGCAA
TTCCTCTGATCTTCATTCTTCCATCCGTTATTTTCTTAAGAAGATTCCCT
GGAAATGTGTTAGCATCTGATAAGCTGCCATGTTTTCTGTTTATGTGTCT
GGGAATCACCTTTAGTGTGATTGGTTTAGCCGTAACAATGTCATCCAATC
ATAATTGTATCCATTCGAACAATCTGTTACCGTACTGTAATGGATCTAGT
GAGCTTGTTGGACCACTGATAACATTAATGTCGTTGAATACGAGTTTTAC
GGACGACGATATCTTAGCAATGAACACCAACGTGAATATATCTCGACTTG
AACAATACGGGTTTGAAAACCTTACTGATGTTGTGAATGCATATTTAGCT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001516-exon-sc0000010-1575043694:1172606..1173443 | TCONS_00001516-exon-sc0000010-1575043694:1172606..1173443 | Clytia hemisphaerica | exon |
| TCONS_00001516-exon-sc0000010-1575043694:1171439..1172489 | TCONS_00001516-exon-sc0000010-1575043694:1171439..1172489 | Clytia hemisphaerica | exon |
| TCONS_00001516-exon-sc0000010-1510915933:1172606..1173443 | TCONS_00001516-exon-sc0000010-1510915933:1172606..1173443 | Clytia hemisphaerica | exon |
| TCONS_00001516-exon-sc0000010-1510915933:1171439..1172489 | TCONS_00001516-exon-sc0000010-1510915933:1171439..1172489 | Clytia hemisphaerica | exon |
| TCONS_00001516-exon-sc0000010-1491911889:1172606..1173443 | TCONS_00001516-exon-sc0000010-1491911889:1172606..1173443 | Clytia hemisphaerica | exon |
| TCONS_00001516-exon-sc0000010-1491911889:1171439..1172489 | TCONS_00001516-exon-sc0000010-1491911889:1171439..1172489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1171439..1173443 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013057 | AA_transpt_TM |
Blast
BLAST of TCONS_00001516 vs. Swiss-Prot (Human)
Match: S38AB (Putative sodium-coupled neutral amino acid transporter 11 OS=Homo sapiens GN=SLC38A11 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.602e-25 Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 3
Query: 900 TVLMILIVLRVFTLGEKIPHVSEIYHPFKYLGTNIIQSIAVVTFTFICQHNIRATYMQPHVTNNYDVSKPVDMVASFTLVVNLLISGAGYTTFNVFTQGNILENYCEEDFIAGLTKTXXXXXXXXXXXXECFNIRLMTDELIIVHHRFKNIFHFVATFVILLPIFIGSLFIDCLPLILEMAGVVLAIPLIFILPSVIFLRRFPGNVLASDKLPCFLFMCLGITFSVIGLAVTMSSNHNCIHSNNLLPYC 1646
T+++ +++ R +LG PH+ + + + N IQ++ V++F FIC HN Y S+ + M ++ + + + GY TF FTQG++ ENYC D + + + + +I +P+ECF R + + ++FH V T +++ + SL IDCL ++LE+ GV+ A PLIFI+PS +L+ SDK+ + + +G V G + +++ +C H + YC
Sbjct: 133 TLILGIVMARAISLG---PHIPKTEDAWVFAKPNAIQAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIAN-VFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGAVVMVFGFVMAITNTQDCTHGQEMF-YC 376
The following BLAST results are available for this feature:
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