|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001515 ID=TCONS_00001515|Name=TCONS_00001515|organism=Clytia hemisphaerica|type=transcript|length=2607bpRun BLAST on NCBI protein sequence of TCONS_00001515-protein >TCONS_00001515-protein ID=TCONS_00001515-protein|Name=TCONS_00001515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp MQKAKKYDWKDSNMALFGSDTEKKVKKESAESEPAWKGAGEKVGVQVWRIRun BLAST on NCBI transcript from alignment at sc0000010:1148555..1157763- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001515 ID=TCONS_00001515|Name=TCONS_00001515|organism=Clytia hemisphaerica|type=transcript|length=9209bp|location=Sequence derived from alignment at sc0000010:1148555..1157763- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:1148555..1157763- >TCONS_00001515 ID=TCONS_00001515|Name=TCONS_00001515|organism=Clytia hemisphaerica|type=CDS|length=8616bp|location=Sequence derived from alignment at sc0000010:1148555..1157763- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001515 vs. Swiss-Prot (Human)
Match: GELS (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 6.650e-47 Identity = 116/342 (33.92%), Postives = 186/342 (54.39%), Query Frame = 1
Query: 424 PAWKGAGEKVGVQVWRIVKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPIQHREVQGHEXXX-XXXXXXXXXLLKGGADTGFNRVLP-ENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGNKIYQWNGSECSHDEKFKAAQEVARIKG--KRGKCRVDNLDEGSISEEHPAIMMLKDGESKPKG--------EAAKGERKMFRVSDADGSLDMDEI--DGDISKSNLTSDDVYIINTGD--HVYCWVGKGASVDERRNGLSYASNYLNKTETP-YLPISVVAEGKENAEFNAAF 1398
P + AG++ G+Q+WR+ KF + YG+FF GD+Y+IL T + ++ + L +DLH+W+G +QDE G AA TV+LD +L+ + +QHREVQG ES+ + S KGG +GF V+P E RLF VK R + TEV + + + D FI+D GN I+QW GS + E+ KA Q I+ + G+ RV +EG +E + +L + P G A + K+++VS+ G++ + + + ++ L S+D +I++ G ++ W GK A+ +ER+ L AS+++ K + P +SV+ EG E F F
Sbjct: 57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGN-LQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVK--GRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEG--TEPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFF 393 HSP 2 Score: 132.494 bits (332), Expect = 1.417e-31 Identity = 101/330 (30.61%), Postives = 157/330 (47.58%), Query Frame = 1
Query: 436 GAGEKVGVQVWRIVKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPIQHREVQGHEXXXXXXXXXXXXLL--KGGADTGFNRVLPENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGNKIYQWNGSECSHDEKFKAAQEVARIKGKRGKCRVDNLDEGSISEEHPAIMMLKDG-ESKPKGEAAKGER---KMFRVSDADGSLDMDEIDGDISKSNLTSDDVYIINTGDHVYCWVGKGASVDERRNGLSYASNYLNKTET---PYLPISVVAEGKENAEFNAAF 1398
G G+K Q+WRI D YG+F+ GDSYIIL Y++ + ++ W G STQDE +A T +LD L P+Q R VQG E + S F ++ KGG + P + +RLF V+ S EV K G L S D F++ + Y W G+ S EK AQE+ R+ + + + EGS + + K + P+ + K + ++F S+ G ++E+ G++ + +L +DDV +++T D V+ WVGK + +E+ L+ A Y+ PI+VV +G E F F
Sbjct: 443 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQI--IYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPAS--TRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEK-TGAQELLRVL----RAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWF 760 The following BLAST results are available for this feature:
BLAST of TCONS_00001515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.