TCONS_00001515-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001515-protein
Unique Name	TCONS_00001515-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	358

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001515-protein ID=TCONS_00001515-protein|Name=TCONS_00001515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MQKAKKYDWKDSNMALFGSDTEKKVKKESAESEPAWKGAGEKVGVQVWRI
VKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQ
DEYGTAAYKTVELDTFLDDKPIQHREVQGHESSKFKSYFSTFTLLKGGAD
TGFNRVLPENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGN
KIYQWNGSECSHDEKFKAAQEVARIKGKRGKCRVDNLDEGSISEEHPAIM
MLKDGESKPKGEAAKGERKMFRVSDADGSLDMDEIDGDISKSNLTSDDVY
IINTGDHVYCWVGKGASVDERRNGLSYASNYLNKTETPYLPISVVAEGKE
NAEFNAAF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000774	XLOC_000774	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001515	TCONS_00001515	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007122	Villin/Gelsolin
IPR007123	Gelsolin-like_dom
IPR029006	ADF-H/Gelsolin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0051015	actin filament binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051015	actin filament binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007122	Villin/Gelsolin	PRINTS	PR00597	GELSOLIN	coord: 291..313 score: 34.98 coord: 320..339 score: 19.55 coord: 62..78 score: 48.13 coord: 176..196 score: 30.3 coord: 122..142 score: 31.17
IPR007122	Villin/Gelsolin	SMART	SM00262	VILL_6	coord: 43..142 e-value: 2.3E-21 score: 87.0 coord: 269..358 e-value: 3.9E-13 score: 59.6 coord: 163..256 e-value: 1.1E-10 score: 51.5
IPR007123	Gelsolin-like domain	PFAM	PF00626	Gelsolin	coord: 288..354 e-value: 2.2E-10 score: 40.2 coord: 180..243 e-value: 1.6E-12 score: 47.0 coord: 63..135 e-value: 2.9E-14 score: 52.6
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 260..358 e-value: 3.8E-19 score: 68.2 coord: 153..259 e-value: 7.8E-16 score: 57.5
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 25..148 e-value: 2.7E-30 score: 104.3
None	No IPR available	CDD	cd11290	gelsolin_S1_like	coord: 36..148 e-value: 1.65949E-52 score: 170.482
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 33..170
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 266..358
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 161..226

Blast

[Close]

BLAST of TCONS_00001515-protein vs. Swiss-Prot (Human)
Match: GELS (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.698e-56
Identity = 119/342 (34.80%), Postives = 188/342 (54.97%), Query Frame = 0

Query:   34 PAWKGAGEKVGVQVWRIVKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPIQHREVQGHESSKFKSYF-STFTLLKGGADTGFNRVLP-ENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGNKIYQWNGSECSHDEKFKAAQEVARIKG--KRGKCRVDNLDEGSISEEHPAIMMLKDGESKPKG--------EAAKGERKMFRVSDADGSLDMDEI--DGDISKSNLTSDDVYIINTG--DHVYCWVGKGASVDERRNGLSYASNYLNKTETP-YLPISVVAEGKENAEFNAAF 358
            P +  AG++ G+Q+WR+ KF +       YG+FF GD+Y+IL T + ++ + L +DLH+W+G   +QDE G AA  TV+LD +L+ + +QHREVQG ES+ F  YF S     KGG  +GF  V+P E    RLF VK   R  +  TEV +   +  + D FI+D GN I+QW GS  +  E+ KA Q    I+   + G+ RV   +EG  +E    + +L    + P G         A +   K+++VS+  G++ +  +  +   ++  L S+D +I++ G    ++ W GK A+ +ER+  L  AS+++ K + P    +SV+ EG E   F   F
Sbjct:   57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGN-LQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVK--GRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEG--TEPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFF 393

HSP 2 Score: 139.813 bits (351), Expect = 1.989e-36
Identity = 101/330 (30.61%), Postives = 156/330 (47.27%), Query Frame = 0

Query:   38 GAGEKVGVQVWRIVKFKVTHWDKEQYGEFFNGDSYIILNTYKNKDSDELLHDLHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPIQHREVQGHESSKFKSYFS--TFTLLKGGADTGFNRVLPENYPSRLFHVKKVSRTKITCTEVSLKKGNLKSEDVFIIDAGNKIYQWNGSECSHDEKFKAAQEVARIKGKRGKCRVDNLDEGSISEEHPAIMMLKDG-ESKPKGEAAKGER---KMFRVSDADGSLDMDEIDGDISKSNLTSDDVYIINTGDHVYCWVGKGASVDERRNGLSYASNYLNKTET---PYLPISVVAEGKENAEFNAAF 358
            G G+K   Q+WRI        D   YG+F+ GDSYIIL  Y++      +  ++ W G  STQDE   +A  T +LD  L   P+Q R VQG E +   S F      + KGG      +  P +  +RLF V+  S       EV  K G L S D F++   +  Y W G+  S  EK   AQE+ R+     + +   + EGS  +     +  K    + P+ +  K +    ++F  S+  G   ++E+ G++ + +L +DDV +++T D V+ WVGK +  +E+   L+ A  Y+           PI+VV +G E   F   F
Sbjct:  443 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQI--IYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPAS--TRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEK-TGAQELLRVL----RAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWF 760

The following BLAST results are available for this feature:

BLAST of TCONS_00001515-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001515-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GELS	6.698e-56	34.80	Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1	[more]

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TCONS_00001515-protein (polypeptide) - C. hemisphaerica