Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001501
Unique NameTCONS_00001501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001501 ID=TCONS_00001501|Name=TCONS_00001501|organism=Clytia hemisphaerica|type=transcript|length=2027bp
TCTAGATGAAGTAAATTAATATGTATGAAATAGAATGTAAGAAAAGGTGA
GGAAAGCGAAAGTAAAAATGGCGAATAACAATAATACAAGCAAACCAAAA
GGACTTTACTATGAAGATGAGCGGATTGTTGTCAACGCCCATGGAATGAG
GGCTGGCTTAATGTTTCCTGACTGCTATGTTGTAATAGATGATTGTAGAG
ATGGTGATGCGGTCCCACAAGATGTAGAAATGAAATCAGAACTTGATGTG
AAAGTTCAATCGGATCCAGAGGACCTACACAGTCAATCAAACTTCTCAAA
TTTGAGTATTCACAATGGTTTGTCTATTGATGACTGTGGATTACTATCTA
GTGAAAACGAGGACGTCAAATTAGAAATAATAGACGAAGACCCTCAAATG
CCGGTCACACCCATTTCAACGACAGTAAAACTAGAAAATGTTGAGCTTTT
ATTACCACTTGAAGCGGTTTTGACAATAAAAATGGAAACTAATCAACATG
ATACTAATCACATCGCTCTAATTAATGTTGAAATGAATTCAGAAAGTTTT
GTACCGGAAAACCGAGAAAGCGTGGTAGATGAGAATAACAATGGCATTGA
TTTGAATAATCTTGTTCATAAAAACACTCATCACACTTCTGCTGAAATTA
ATGCTGTCCATACAGTAATTCATGAAGACGAATCTATTGATGAAAGTGAA
GATCATTGTCGAATGCATACAGAGCCTAAAACACCtggtaaaaattgcaa
aatcaatAATTGTGATAAAACTGATGGAGTTACTGAAAATGGGGACATTT
CCAATGAGGctgaaattgatgatgatgatgatttgaGAGCTTTCATTGAT
GTGGACACATTTGTTTTAGCAAACGAATGTCGTGTAGAGTTAAATGATTG
TCTGCGTAATGAAAAGGACAAGACTGTTGAAAATGGTAGTGATAATTCAA
TTTGTGTCGATAAAAACGAAGAAAATATGGAAAGTTTCGTTGAGGACGAA
AACGATGAAAATTTACTATCGAACCGAACCATATCCAGgattaaaaaaca
ttttacacATTTAGAAAAAGGAGGAGATGAAATTTCTTTTCggattgttt
tgaaatcaaactcgagattttattacaaaacttgTGGCATTCAAAAAATC
CATGAAAATCCACATCAATTGGATGAAATAATGTTTTTCGAAGAAACATC
ATCGCAACCGAATATTCGTTTAATCACAGAATTATACGCCCTAACGCAAA
ATCAATCACAACAATATCTCATAAACAAATACCCAACAATATTATTCATT
TCGCAGATTCAAACCGTAGATTGCATATTCTCATTATTTCTACTGTACGT
TCGAACGAATGTTGATTGCCAAATAGTTGGTACAATACTCTGCAATAACA
ACAACAATCAAGCGAAAGTGTTGAAAGAAGCGTTGACCGAATTCAAAAAG
ATCAACAGTTTTTGGACACCCAAATATGTAGTGATTGATCCAAACCAAGT
CATCCTTAACACTGCTGAAGAAGTATTTCCAGacTCAGAACTATTCTTTG
ATCCCGAAATGTGTGTTTACAATTGGGAAAAGCATCTCTCAAATCCATTG
AATGGTCTAAGAGAGCATTCAGAGCAGTTATTTCATGACTTGAAAGCACT
TCAAATGTGTTCAAAGAAAGGTCAATATCATGATTTGGTTCAAGAAATGA
GGGATAAGAATATTTGTAATGATAGAAGCTTTCGAGAAGAATGGCTTATG
AATGCGAAGGTAAGCTCATCCAAACTaacagatatatttttcaactcgAT
TCGCTTATAGTGGTTCTCAAGATTTCTAATGCAATTTTTGCATCTTTTGG
TTTTTTGCGACCCTGACATAAAGCATTACTACTAAAAAATATAACCCCGA
AAAGCTAGAACAGAATCTCCTTGATTTGAAGCCATTTCCTGAACGGTCTT
TTACACGAACACTAGTGGGTTAGTAAACAGTAGCGTGATGGGTCGACCAA
AATTTGAGCAAACTGGGGTATTGGTAA
Run BLAST on NCBI

transcript from alignment at sc0000010:803649..810745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001501 ID=TCONS_00001501|Name=TCONS_00001501|organism=Clytia hemisphaerica|type=transcript|length=7097bp|location=Sequence derived from alignment at sc0000010:803649..810745- (Clytia hemisphaerica)
TCTAGATGAAGTAAATTAATATGTATGAAATAGAATGTAAGAAAAGGTGA GGAAAGCGAAAGTAAAAATGGCGAATAACAATAATACAAGCAAACCAAAA GGACTTTACTATGAAGATGAGCGGATTGTTGTCAACGCCCATGGAATGAG GGCTGGCTTAATGTTTCCTGACTGCTATGTTGTAATAGATGATTGTAGAG ATGGTGATGCGGTCCCACAAGATGTAGAAATGAAATCAGAACTTGATGTG AAAGTTCAATCGGATCCAGAGGACCTACACAGTCAATCAAACTTCTCAAA TTTGAGTATTCACAATGGTTTGTCTATTGATGACTGTGGATTACTATCTA GTGAAAACGAGGACGTCAAATTAGAAATAATAGACGAAGACCCTCAAATG CCGGTCACACCCATTTCAACGACAGTAAAACTAGAAAATGTTGAGCTTTT ATTACCACTTGAAGCGGTTTTGACAATAAAAATGGAAACTAATCAACATG ATACTAATCACATCGCTCTAATTAATGTTGAAATGAATTCAGAAAGTTTT GTACCGGAAAACCGAGAAAGCGTGGTAGATGAGAATAACAATGGCATTGA TTTGAATAATCTTGTTCATAAAAACACTCATCACACTTCTGCTGAAATTA ATGCTGTCCATACAGTAATTCATGAAGACGAATCTATTGATGAAAGTGAA GATCATTGTCGAATGCATACAGAGCCTAAAACACCTGGTAAAAATTGCAA AATCAATAATTGTGATAAAACTGATGGAGTTACTGAAAATGGGGACATTT CCAATGAGGCTGAAATTGATGATGATGATGATTTGAGAGCTTTCATTGAT GTGGACACATTTGTTTTAGCAAACGAATGTCGTGTAGAGTTAAATGATTG TCTGCGTAATGAAAAGGACAAGACTGTTGAAAATGGTAGTGATAATTCAA TTTGTGTCGATAAAAACGAAGAAAATATGGAAAGTTTCGTTGAGGACGAA AACGATGAAAATTTACTATCGAACCGAACCATATCCAGGATTAAAAAACA TTTTACACATTTAGAAAAAGGAGGAGATGAAATTTCTTTTCGGATTGTTT TGAAATCAAACTCGAGATTTTATTACAAAACTTGTGGCATTCAAAAAATC CATGAAAATCCACATCAATTGGATGAAATAATGTTTTTCGAAGAAACATC ATCGCAACCGAATATTCGTTTAATCACAGAATTATACGCCCTAACGCAAA ATCAATCACAACAATATCTCATAAACAAATACCCAACAATATTATTCATT TCGCAGATTCAAACCGTAGATTGCATATTCTCATTATTTCTACTGTACGT TCGAACGAATGTTGATTGCCAAATAGTTGGTACAATACTCTGCAATAACA ACAACAATCAAGCGAAAGTGTTGAAAGAAGCGTTGACCGAATTCAAAAAG ATCAACAGTTTTTGGACACCCAAATATGTAGTGATTGATCCAAACCAAGT CATCCTTAACACTGCTGAAGAAGTATTTCCAGGTACAAGAATTGTTTTAA TCCATTTTATAATGAATTTGTTTGCTTAACCCTTTCGGGAAAAGTTCTTT AGCCGTACAAACCTTCGCGAGCAGAAACTTCCGCGAATNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCA ACGACAGTAAAACTAGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGT TTTGACAATAAAAATGGAAACTAATCAACATGATACTAATCACATCGCTC TAATTAATGTTGAAATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAA AGCGTGGTAGATGAGAATAACAATGGCATTGATTTGAATAATCTTGTTCA TAAAAACACTCATCACACTTCTGCTGAAATTGATACTGTCCATACAGTAA TTCATGAAGACGAATCTGTTAATGAAAGTGAAGATGATTGTATGCATACA GAGCCTAAAACACCTGGTAAAAATTGCAAAATCAATAATTGTGATAAAAC TGATGGAGTTACTGAAAATGGGGACATTTCCAATGAGGCTGAAATTGATG ATGATGATGATGATTTGAGAGCTTTCATTGATGTGGACACATTTGTTTTA GCAAACGAATGTCGTGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGA CAAGACTGTTGATAATGGTAGTGATAATTCAATTTGTGTCGATAAAAACG AAGAAAATATGGAAAGTTTCGTTGAGGACGAAAACGATGAAAATTTACTA TCGAACCGAACCATATCCAGGATTAAAAAACATTTTACACATTTAGAAAA AGGAGGAGATGAAATTTCTTTTCGGATTGTTTTGAAATCAAACTCGAGAT TTTATTACAAAACTTGTGGCATTCAAAAAATCCATGAAAATCCACATCAA TTGGATGAAATAATGTTTTTCGAAGAAACATCATCGCAACCGAATATTCG TTTAATCACAGAATTATACGCCCTAACGCAAAATCAATCACAACAATATC TCATAAACAAATACCCAACAATATTATTCATTTCGCAGATTCAAACCGTA GATTGCATATTCTCATTATTTCTACTGTACGTTCGAACGAATGTTGATTG CCAAATAGTTGGTACAATACTCTGCAATAACAACAACAATCAAGCGAAAG TGTTGAAAGAAGCGTTGACCGAATTCAAAAAGATCAACAGTTTTTGGACA CCCAAATATGTAGTGATTGATCCAAACCAAGTCATCCTTAACACTGCTGA AGAAGTATTTCCAGGTACAAGAATTGTTTTAATCCATTTTATAATGAATT TGTTTGCTTAACCCTTTCGGGAAAAGTTCTTTAGCCGTACAAACCTTCGC GAGCAGAAACTTCCGCGAATTTTGCGAATTTTGGCCCTTTTCGCGGAAGT AAATGTCTTTAGAAAGACTAATAAGTCAAAGGACAAATGTTTCAAGCCAA TCCAAGAAGTATTTGTATTAAGTATTAAGCCATTTTTTCGTGTTTAAGTT CCNTTGTGAGTGATTTCTGACTGGGTGACAATGTTCGGGCATAGCTTGCA TTTACCACACGGTTTCGTGGTGTTTTGACGTGGTGGTCTTTCCAATATAT CATTTCGCACGATTTTGTTGGCGATTGTTTTTCGGTNGAATAAAAACATA CTGGTGTAAAATATTTCGCTCTCTCTTAGAGCATCTTCAGTTTTTTTGAA TAACAAAGACGTTTAACAATTATATTTAACGACGCTAGAACGGCATTAGA ATGACTTCTTCAGTTTTTGACGTCACGGAACATCTGGTACACTTCTTTCG CGTACCCGTGGCAGTCTTTGTTGAGACCTGATGGAGCCAGAGTTTGGAGT CTGCACATCCATTTATCTTCGGCTCGTTCTCTTTCTGCAGAGGATGAAAA GTCACTTTCTAGGATCATCACCTCAAGGTCAGCAAANTTGGAAAGAGACC GAAAAATTCAGAGTTGGCAGAACATTTCCATCGCGACCACTCCTTTGCTG ACCTTGAGGTGATGATCCTAGAAAGTGACTTTTCATCCTCTGCAGAAAGA GAACGAGCCGAAGATAAATGGATGTGCAGACTCCAAACTCTGGCACCATC AGGTCTCAACAAAGACTGCCACGGGTACGCGAAAGAAGTGTACCAGATGT TCCGTGACGTCAAAAACTGAAGAAGTCATTGTAATGCCGTTCTAGCGTCG TTAAATATAATTGTTAAACGTCTTTGTTATTCAAAAAAACTGAAGATGCT CTAAAGGCCGGTCTCGACTTGCGCGCGCTGCAATCGCACTTTTTGGCTTC AATCCCTTTTGCTTGGAAAAAAGATTACGTCATAAAAATGTAGCGCGCGC ACGAAAAAAAAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCCAATGGAGTTGC TTCATTTTTCTTTTGACCAATAGCGTGGAAGCTTTTCTCGAAAAGTGCGA TTGAAGCGCGCGCAAGTGGAGACCGGCCTTAAGAGAGAGCGAAATATTTT ACACCAGTATGTTTTTATTCTGAGTTTTACTTCGTCCGCAATGCTGAATT GAAAGTTTATGCTCGCGAAAAAAGTATTCTGACAACAGACAAGCAGACCT CAAAATTACAATATTAAATAAGGGTTCTTTTTTGCAATGCTCCTACACAA AATGTCCTAGGGGGGTCAGTATGACAACGTTTTAGTGGCGCTCATCTTTT TCAGAATTTTTCGTTATTGAAAAAACCTCCCAAAAATTCCCTAGTCTTTT TTTTCTTCGCGCTATTCTCAACTTCAGTTCTCAACTTCAGTTGAGCTAGA ATCTGAGAATGTCTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGT CTGTCACCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTA AAACTTTGGGGCAGGCTGGAGACTTCAAAAATGGTCCGATTGGGCTGAAA TTTTGCACACTTGATCCTTGGGCAAATCCCTGGGGGTTTTTTTTTCATTT TTTGAAAATTTTCATTTTTAAGGGCGTTGTCACGAGTTTTCGCCAAAACG AGGCTAAAACTTTGGGGCAGGCTGGAGACTTCAAAAATGATCGGGTTTGG CTGAAATTTGAAACACTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTT TTATTTTTTGAAAATTTTCATTTTTAAGGGCGTGGTCACGAGTTTTCGCC AAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGACTTCAAAAAAGGTCGG ATTTGACTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGAGGTG TTTTTTTTATTTTTTGAAAATTTTGATTTTTGGGGCCTGGGGACGAGGTT TTCACCAAAACGAGGCTGGCAGCCTGGACACTTCAAAAAAGGTCGGATTT GGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTT TTTTACTTTTTGAAAATTTTGATTTTTGGGGCCCGGGGACGAGGTTTTCA CCAAAACGAGGCTGGCAGCCTGGACACTTCAGAAAAGGTCGGATTTGGCT GAAATTTGGCACCCTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTT ACTTTTTGAAAATTTTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAA AACGAGGCTGGCAGCCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAA TTTGGCACCCTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTT TTTGAAAATTTTGATTTTTGGGGCCTGGGGACGAGGTTCAGCCAAAACGG ACAAAGAATATTTGCTACCTAATACTAAATATTTGAAATGTTACAATTGG GCCTTCTAATAACGGGAAAATCTGAAGTTGAGCCCAGTGCGGTGCGCACG TTCGACTATCAAAAAAAGATCTAAAATATTTACCGAATTCGAAAAGTAAT CACCTTAAAATAAAGAATAACTGAAATGCTAATGCTGTAATGCTTCATGT ATTATTTTAATCGGATTAAATTTCGCGAGATTAGATTAAATTTTGCGAGC GAAAAAAATCGCGAAATTTTCTGCATTTAATTTCGCGAGTCAGGAATCTC ACACGTTTTCGCGAGTTTTGATTTCGCGAAAATGGCAAAAATTTATCATA TTTTCGACTGATATTCGTCGTCAATTTATTTTATAATTACTTTTATTTTC AGACTCAGAACTATTCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAA AGCATCTCTCAAATCCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTA TTTCATGACTTGAAAGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCA TGATTTGGTTCAAGAAATGAGGGATAAGAATATTTGTAATGATAGAAGCT TTCGAGAAGAATGGCTTATGAATGCGAAGGTAAGCTCATCCAAACTAACA GATATATTTTTCAACTCGATTCGCTTATAGTGGTTCTCAAGATTTCTAAT GCAATTTTTGCATCTTTTGGTTTTTTGCGACCCTGACATAAAGCATTACT ACTAAAAAATATAACCCCGAAAAGCTAGAACAGAATCTCCTTGATTTGAA GCCATTTCCTGAACGGTCTTTTACACGAACACTAGTGGGTTAGTAAACAG TAGCGTGATGGGTCGACCAAAATTTGAGCAAACTGGGGTATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000762XLOC_000762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001501-exon-sc0000010-1575043694:809214..810745TCONS_00001501-exon-sc0000010-1575043694:809214..810745Clytia hemisphaericaexon
TCONS_00001501-exon-sc0000010-1575043694:803649..804143TCONS_00001501-exon-sc0000010-1575043694:803649..804143Clytia hemisphaericaexon
TCONS_00001501-exon-sc0000010-1510915933:809214..810745TCONS_00001501-exon-sc0000010-1510915933:809214..810745Clytia hemisphaericaexon
TCONS_00001501-exon-sc0000010-1510915933:803649..804143TCONS_00001501-exon-sc0000010-1510915933:803649..804143Clytia hemisphaericaexon
TCONS_00001501-exon-sc0000010-1491911889:809214..810745TCONS_00001501-exon-sc0000010-1491911889:809214..810745Clytia hemisphaericaexon
TCONS_00001501-exon-sc0000010-1491911889:803649..804143TCONS_00001501-exon-sc0000010-1491911889:803649..804143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:803649..810745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.075976 0.265292 0.708796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.227494 0.0353945 0 0 0.0630046 0 0.411379 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top