TCONS_00001500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001500
Unique NameTCONS_00001500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001500 ID=TCONS_00001500|Name=TCONS_00001500|organism=Clytia hemisphaerica|type=transcript|length=1595bp
AGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGTTTTGACAATAAAAA
TGGAAACTAATCAACATGATACTAATCACATCGCTCTAATTAATGTTGAA
ATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAAAGCGTGGTAGATGA
GAATAACAATGGCATTGATTTGAATAATCTTGTTCATAAAAACACTCATC
ACACTTCTGCTGAAATTGATACTGTCCATACAGTAATTCATGAAGACGAA
TCTGTTAATGAAAGTGAAGATGATTGTATGCATACAGAGCCTAAAACACC
tggtaaaaattgcaaaatcaatAATTGTGATAAAACTGATGGAGTTACTG
AAAATGGGGACATTTCCAATGAGGctgaaattgatgatgatgatgatgat
ttgaGAGCTTTCATTGATGTGGACACATTTGTTTTAGCAAACGAATGTCG
TGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGACAAGACTGTTGATA
ATGGTAGTGATAATTCAATTTGTGTCGATAAAAACGAAGAAAATATGGAA
AGTTTCGTTGAGGACGAAAACGATGAAAATTTACTATCGAACCGAACCAT
ATCCAGgattaaaaaacattttacacATTTAGAAAAAGGAGGAGATGAAA
TTTCTTTTCggattgttttgaaatcaaactcgagattttattacaaaact
tgTGGCATTCAAAAAATCCATGAAAATCCACATCAATTGGATGAAATAAT
GTTTTTCGAAGAAACATCATCGCAACCGAATATTCGTTTAATCACAGAAT
TATACGCCCTAACGCAAAATCAATCACAACAATATCTCATAAACAAATAC
CCAACAATATTATTCATTTCGCAGATTCAAACCGTAGATTGCATATTCTC
ATTATTTCTACTGTACGTTCGAACGAATGTTGATTGCCAAATAGTTGGTA
CAATACTCTGCAATAACAACAACAATCAAGCGAAAGTGTTGAAAGAAGCG
TTGACCGAATTCAAAAAGATCAACAGTTTTTGGACACCCAAATATGTAGT
GATTGATCCAAACCAAGTCATCCTTAACACTGCTGAAGAAGTATTTCCAG
acTCAGAACTATTCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAAAG
CATCTCTCAAATCCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTATT
TCATGACTTGAAAGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCATG
ATTTGGTTCAAGAAATGAGGGATAAGAATATTTGTAATGATAGAAGCTTT
CGAGAAGAATGGCTTATGAATGCGAAGGTAAGCTCATCCAAACTaacaga
tatatttttcaactcgATTCGCTTATAGTGGTTCTCAAGATTTCTAATGC
AATTTTTGCATCTTTTGGTTTTTTGCGACCCTGACATAAAGCATTACTAC
TAAAAAATATAACCCCGAAAAGCTAGAACAGAATCTCCTTGATTTGAAGC
CATTTCCTGAACGGTCTTTTACACGAACACTAGTGGGTTAGTAAACAGTA
GCGTGATGGGTCGACCAAAATTTGAGCAAACTGGGGTATTGGTAA
Run BLAST on NCBI

transcript from alignment at sc0000010:803649..808831-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001500 ID=TCONS_00001500|Name=TCONS_00001500|organism=Clytia hemisphaerica|type=transcript|length=5183bp|location=Sequence derived from alignment at sc0000010:803649..808831- (Clytia hemisphaerica)
AGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGTTTTGACAATAAAAA
TGGAAACTAATCAACATGATACTAATCACATCGCTCTAATTAATGTTGAA
ATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAAAGCGTGGTAGATGA
GAATAACAATGGCATTGATTTGAATAATCTTGTTCATAAAAACACTCATC
ACACTTCTGCTGAAATTGATACTGTCCATACAGTAATTCATGAAGACGAA
TCTGTTAATGAAAGTGAAGATGATTGTATGCATACAGAGCCTAAAACACC
TGGTAAAAATTGCAAAATCAATAATTGTGATAAAACTGATGGAGTTACTG
AAAATGGGGACATTTCCAATGAGGCTGAAATTGATGATGATGATGATGAT
TTGAGAGCTTTCATTGATGTGGACACATTTGTTTTAGCAAACGAATGTCG
TGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGACAAGACTGTTGATA
ATGGTAGTGATAATTCAATTTGTGTCGATAAAAACGAAGAAAATATGGAA
AGTTTCGTTGAGGACGAAAACGATGAAAATTTACTATCGAACCGAACCAT
ATCCAGGATTAAAAAACATTTTACACATTTAGAAAAAGGAGGAGATGAAA
TTTCTTTTCGGATTGTTTTGAAATCAAACTCGAGATTTTATTACAAAACT
TGTGGCATTCAAAAAATCCATGAAAATCCACATCAATTGGATGAAATAAT
GTTTTTCGAAGAAACATCATCGCAACCGAATATTCGTTTAATCACAGAAT
TATACGCCCTAACGCAAAATCAATCACAACAATATCTCATAAACAAATAC
CCAACAATATTATTCATTTCGCAGATTCAAACCGTAGATTGCATATTCTC
ATTATTTCTACTGTACGTTCGAACGAATGTTGATTGCCAAATAGTTGGTA
CAATACTCTGCAATAACAACAACAATCAAGCGAAAGTGTTGAAAGAAGCG
TTGACCGAATTCAAAAAGATCAACAGTTTTTGGACACCCAAATATGTAGT
GATTGATCCAAACCAAGTCATCCTTAACACTGCTGAAGAAGTATTTCCAG
GTACAAGAATTGTTTTAATCCATTTTATAATGAATTTGTTTGCTTAACCC
TTTCGGGAAAAGTTCTTTAGCCGTACAAACCTTCGCGAGCAGAAACTTCC
GCGAATTTTGCGAATTTTGGCCCTTTTCGCGGAAGTAAATGTCTTTAGAA
AGACTAATAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTATTT
GTATTAAGTATTAAGCCATTTTTTCGTGTTTAAGTTCCNTTGTGAGTGAT
TTCTGACTGGGTGACAATGTTCGGGCATAGCTTGCATTTACCACACGGTT
TCGTGGTGTTTTGACGTGGTGGTCTTTCCAATATATCATTTCGCACGATT
TTGTTGGCGATTGTTTTTCGGTNGAATAAAAACATACTGGTGTAAAATAT
TTCGCTCTCTCTTAGAGCATCTTCAGTTTTTTTGAATAACAAAGACGTTT
AACAATTATATTTAACGACGCTAGAACGGCATTAGAATGACTTCTTCAGT
TTTTGACGTCACGGAACATCTGGTACACTTCTTTCGCGTACCCGTGGCAG
TCTTTGTTGAGACCTGATGGAGCCAGAGTTTGGAGTCTGCACATCCATTT
ATCTTCGGCTCGTTCTCTTTCTGCAGAGGATGAAAAGTCACTTTCTAGGA
TCATCACCTCAAGGTCAGCAAANTTGGAAAGAGACCGAAAAATTCAGAGT
TGGCAGAACATTTCCATCGCGACCACTCCTTTGCTGACCTTGAGGTGATG
ATCCTAGAAAGTGACTTTTCATCCTCTGCAGAAAGAGAACGAGCCGAAGA
TAAATGGATGTGCAGACTCCAAACTCTGGCACCATCAGGTCTCAACAAAG
ACTGCCACGGGTACGCGAAAGAAGTGTACCAGATGTTCCGTGACGTCAAA
AACTGAAGAAGTCATTGTAATGCCGTTCTAGCGTCGTTAAATATAATTGT
TAAACGTCTTTGTTATTCAAAAAAACTGAAGATGCTCTAAAGGCCGGTCT
CGACTTGCGCGCGCTGCAATCGCACTTTTTGGCTTCAATCCCTTTTGCTT
GGAAAAAAGATTACGTCATAAAAATGTAGCGCGCGCACGAAAAAAAAGTT
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGCGCCAATGGAGTTGCTTCATTTTTCTTTT
GACCAATAGCGTGGAAGCTTTTCTCGAAAAGTGCGATTGAAGCGCGCGCA
AGTGGAGACCGGCCTTAAGAGAGAGCGAAATATTTTACACCAGTATGTTT
TTATTCTGAGTTTTACTTCGTCCGCAATGCTGAATTGAAAGTTTATGCTC
GCGAAAAAAGTATTCTGACAACAGACAAGCAGACCTCAAAATTACAATAT
TAAATAAGGGTTCTTTTTTGCAATGCTCCTACACAAAATGTCCTAGGGGG
GTCAGTATGACAACGTTTTAGTGGCGCTCATCTTTTTCAGAATTTTTCGT
TATTGAAAAAACCTCCCAAAAATTCCCTAGTCTTTTTTTTCTTCGCGCTA
TTCTCAACTTCAGTTCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCT
GTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCACCAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTAAAACTTTGGGGCAG
GCTGGAGACTTCAAAAATGGTCCGATTGGGCTGAAATTTTGCACACTTGA
TCCTTGGGCAAATCCCTGGGGGTTTTTTTTTCATTTTTTGAAAATTTTCA
TTTTTAAGGGCGTTGTCACGAGTTTTCGCCAAAACGAGGCTAAAACTTTG
GGGCAGGCTGGAGACTTCAAAAATGATCGGGTTTGGCTGAAATTTGAAAC
ACTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTTTTATTTTTTGAAAA
TTTTCATTTTTAAGGGCGTGGTCACGAGTTTTCGCCAAAACGAGGCTAAA
ACTTTGGGGCAGGCTGGAGACTTCAAAAAAGGTCGGATTTGACTGAAATT
TGGCACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTATTTTT
TGAAAATTTTGATTTTTGGGGCCTGGGGACGAGGTTTTCACCAAAACGAG
GCTGGCAGCCTGGACACTTCAAAAAAGGTCGGATTTGGCTGAAATTTGGC
ACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAA
AATTTTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAAAACGAGGCTG
GCAGCCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAATTTGGCACCC
TTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAAAATT
TTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAAAACGAGGCTGGCAG
CCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAATTTGGCACCCTTGT
TCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAAAATTTTGA
TTTTTGGGGCCTGGGGACGAGGTTCAGCCAAAACGGACAAAGAATATTTG
CTACCTAATACTAAATATTTGAAATGTTACAATTGGGCCTTCTAATAACG
GGAAAATCTGAAGTTGAGCCCAGTGCGGTGCGCACGTTCGACTATCAAAA
AAAGATCTAAAATATTTACCGAATTCGAAAAGTAATCACCTTAAAATAAA
GAATAACTGAAATGCTAATGCTGTAATGCTTCATGTATTATTTTAATCGG
ATTAAATTTCGCGAGATTAGATTAAATTTTGCGAGCGAAAAAAATCGCGA
AATTTTCTGCATTTAATTTCGCGAGTCAGGAATCTCACACGTTTTCGCGA
GTTTTGATTTCGCGAAAATGGCAAAAATTTATCATATTTTCGACTGATAT
TCGTCGTCAATTTATTTTATAATTACTTTTATTTTCAGACTCAGAACTAT
TCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAAAGCATCTCTCAAAT
CCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTATTTCATGACTTGAA
AGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCATGATTTGGTTCAAG
AAATGAGGGATAAGAATATTTGTAATGATAGAAGCTTTCGAGAAGAATGG
CTTATGAATGCGAAGGTAAGCTCATCCAAACTAACAGATATATTTTTCAA
CTCGATTCGCTTATAGTGGTTCTCAAGATTTCTAATGCAATTTTTGCATC
TTTTGGTTTTTTGCGACCCTGACATAAAGCATTACTACTAAAAAATATAA
CCCCGAAAAGCTAGAACAGAATCTCCTTGATTTGAAGCCATTTCCTGAAC
GGTCTTTTACACGAACACTAGTGGGTTAGTAAACAGTAGCGTGATGGGTC
GACCAAAATTTGAGCAAACTGGGGTATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000762XLOC_000762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001500-exon-sc0000010-1575043694:807732..808831TCONS_00001500-exon-sc0000010-1575043694:807732..808831Clytia hemisphaericaexon
TCONS_00001500-exon-sc0000010-1575043694:803649..804143TCONS_00001500-exon-sc0000010-1575043694:803649..804143Clytia hemisphaericaexon
TCONS_00001500-exon-sc0000010-1510915933:807732..808831TCONS_00001500-exon-sc0000010-1510915933:807732..808831Clytia hemisphaericaexon
TCONS_00001500-exon-sc0000010-1510915933:803649..804143TCONS_00001500-exon-sc0000010-1510915933:803649..804143Clytia hemisphaericaexon
TCONS_00001500-exon-sc0000010-1491911889:807732..808831TCONS_00001500-exon-sc0000010-1491911889:807732..808831Clytia hemisphaericaexon
TCONS_00001500-exon-sc0000010-1491911889:803649..804143TCONS_00001500-exon-sc0000010-1491911889:803649..804143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:803649..808831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00616316	0.0954686	0.374155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.01337	0.00245625	0	0	0	0	0.0858325	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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