TCONS_00001496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001496
Unique NameTCONS_00001496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001496 ID=TCONS_00001496|Name=TCONS_00001496|organism=Clytia hemisphaerica|type=transcript|length=1074bp
TACGAAACTAAATCCACGTAAAATATACCGTACATTTTGATATTTGCTAC
AGGTCCATTTTCAACTGATTTTTGATCATCTAcacaaaattattcaaaaa
aattaatccgATTTATGGTAGAAATATCAGCAAAGGAAATGCcttatcaa
tcaaaacaaaacagttcTTTTAGGGAAAAAATTTACACCTAACTtaagtt
tttttcaaacttaGCAAGTAAACCATAATGGTCAGAAGGAAACATGGAAA
CTTTGGTTTGATCGTGCATGACGATCTCATCAAATATCTCATCCCCAATA
ACTTGGCATTGAGTTGCCTTCCAATGATTCACATCATTGGTGTCCTCCAT
ATACAAAATTCGATCaatccttttctttttctgtgtaATAGGCTTCCCAT
GGAACATTTGGTTCATAACATTATGATCAGAATCTTTGGTGAAACCATCT
AGATCTTCATGGACAACCCGCCATGTATCCTTAAATTGACTACTCTCTAT
AAACTTATTTTCTTCGTCTGTTTCATGGAAATTGAAATCACCAACCAAAA
AGGCAAGCTCTATGTCCTtagttttcttttgtaaaacATCAAATATGGCT
CCCATTTGAATTTCCCTGATATTTGGTGATGTGATATAGGACTCGATATG
AACAGTACCAAACCGAAATTTAGCTCCTTCTTTTTCGACATCCATATATT
CACATTGTCTTTCCAAAGTCGTTTTCAATTTGATTGTCCCTTTCTTTaag
attttcaaatctttctttttgtaaagcATAACAAAATAGTTGGAATATAA
AGGTCTCTCATTGACAACAACGTAATGATCAGAGAATCTGGAATgttttt
tgacaacttttaaGAAATCTAAAGTGCATTCCTGAAGACCAATTAAGTCA
GGGTTCTTATTGACAACAATGTTGAGTAATTCTGTCCATCTTTGCTCTGG
CTGGTCAAGCTTCTGGCTTGTACCGAACCAAATATTCCAGGATAAAACTG
AGAGCTCAGTGCATGTATTTTCCGAAGAGGTATTTCCCATTAGATTTTAA
CATTAATACTTTTTATCTAGAACT
Run BLAST on NCBI

transcript from alignment at sc0000010:697464..699335-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001496 ID=TCONS_00001496|Name=TCONS_00001496|organism=Clytia hemisphaerica|type=transcript|length=1872bp|location=Sequence derived from alignment at sc0000010:697464..699335- (Clytia hemisphaerica)
TACGAAACTAAATCCACGTAAAATATACCGTACATTTTGATATTTGCTAC
AGGTCCATTTTCAACTGATTTTTGATCATCTACACAAAATTATTCAAAAA
AATTAATCCGATTTATGGTAGAAATATCAGCAAAGGAAATGCCTTATCAA
TCAAAACAAAACAGTTCTTTTAGGGAAAAAATTTACACCTAACTTAAGTT
TTTTTCAAACTTAGCAAGTAAACCATAATGGTCAGAAGGAAACATGGAAA
CTTTGGTTTGATCGTGCATGACGATCTCATCAAATATCTCATCCCCAATA
ACTTGGCATTGAGTTGCCTTCCAATGATTCACATCATTGGTGTCCTCCAT
ATACAAAATTCGATCAATCCTTTTCTTTTTCTGTGTAATAGGCTTCCCAT
GGAACATTTGGTTCATAACATTATGATCAGAATCTTTGGTGAAACCATCT
AGATCTTCATGGACAACCCGCCATGTATCCTTAAATTGACTACTCTCTAT
AAACTTATTTTCTTCGTCTGTTTCATGGAAATTGAAATCACCAACCAAAA
AGGCAAGCTCTATGTCCTTAGTTTTCTTTTGTAAAACATCAAATATGGCT
CCCATTTGAATTTCCCTGATATTTGGTGATGTGATATAGGACTCGATATG
AACAGTACCAAACCGAAATTTAGCTCCTTCTTTTTCGACATCCAAATATT
CACATTGTCTTTCCAAAGTCGTTTTCAATTTGATTGTCCCTTTCTTTAAG
ATTTTCAAATCTTTCTTTTTGTAAAGCATAACAAAATAGTTGGAATATAA
AGGTCTCTCATTGACAACAACGTAATGATCAGAGAATCTGGAATGTTTTT
TGACAACTTTTAAGAAATCTAAAGTGCATTCCTGAAGACCAATTAAGTCA
GGGTTCTTATTGACAACAATGTTGAGTAATTCTGTCCATCTTTGCTCTGG
CTGGTCAAGCTTCTGGCTTGTACCGAACCAAATATTCCAGGATAAAACTG
AGAGCTCAGTGCATGTATTTTCCGAAGAGGTATTTCCCATTAGATTTTAA
CATTAATACTTTTTATCTGTAACTCTATAAGTAAAAAATAACAGGAGTAT
ATCTACAATTTTTAGGTTTAAAAGCAAGGTTCCAAAGAAAGATTCCATTT
ATGTAAACAAAAATTCACTAGAAGAAAACCAAACCAAAATTCTAGAAATA
ACTATGAGCCCTTAACACCACAAAGGGTTTGGATCAAGTTTACCGAAATA
ATGAGCCAAGGCCCTGTGACATCCTTTCAATCATTTATTTTAGTTTATTA
AAAAAAAATGTTTTCAAAATATTTCTATCTGTAATAAAATCAATGTAAAA
ATTTCAGATGATTGACATNTTTTCTTTTGTAAAATATCAAATATGGCTTC
CATTTGAATTTCCCTGATATTTGGTGATGTGACATAGGACTCGATATGAA
CAGTACCAAAACGAAATTTAGCTCCTTCTTTTTCGACATCCATATATTCA
CATTGTCTTTCCAAAGTCGTTTTCAATTTGATTGTCCCTTTCTTTAAGAT
TTTCAAATCTTTCTTTTTGTAAAGCATAACAAAATAGTTGGAATATAAAG
GTCTCTCATTGACAACAACGTAATGATCAGAGAATCTGGAATGTTTTTTG
ACAACTTTTAAGAAATCTAAAGTGCATTCCTGAAGACCAATTAAGTCAGG
GTTCTTATTGACAACAATGTTGAGTAATTCTGTCCATCTTTGCTCTGGCT
GGTCAAGCTTCTGGCTTGTACCGAACCAAATATTCCAGGATAAAACTGAG
AGCTCAGTGCATGTATTTTCCGAAGAGGTATTTCCCATTAGATTTTAACA
TTAATACTTTTTATCTAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000760XLOC_000760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001496-exon-sc0000010-1575043694:698647..699335TCONS_00001496-exon-sc0000010-1575043694:698647..699335Clytia hemisphaericaexon
TCONS_00001496-exon-sc0000010-1575043694:697464..697848TCONS_00001496-exon-sc0000010-1575043694:697464..697848Clytia hemisphaericaexon
TCONS_00001496-exon-sc0000010-1510915933:698647..699335TCONS_00001496-exon-sc0000010-1510915933:698647..699335Clytia hemisphaericaexon
TCONS_00001496-exon-sc0000010-1510915933:697464..697848TCONS_00001496-exon-sc0000010-1510915933:697464..697848Clytia hemisphaericaexon
TCONS_00001496-exon-sc0000010-1491911889:698647..699335TCONS_00001496-exon-sc0000010-1491911889:698647..699335Clytia hemisphaericaexon
TCONS_00001496-exon-sc0000010-1491911889:697464..697848TCONS_00001496-exon-sc0000010-1491911889:697464..697848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:697464..699335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.44477	5.42075	1.36677	1.25603	3.01066	0.700071	4.61693	1.64719	2.43405	2.28198	3.90237	2.31232	3.12503	2.50216	2.01581	1.53912	5.27047	4.18888	3.51274	4.55258	5.02903	5.98732	8.85714	7.66845	1.22088	2.29797	3.36583	1.16172	3.42733	6.02866
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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