TCONS_00001495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001495
Unique NameTCONS_00001495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001495 ID=TCONS_00001495|Name=TCONS_00001495|organism=Clytia hemisphaerica|type=transcript|length=1910bp
AGAGAAAGTTAATCGATTCCGTGTCGATATCAACAACAATTATATCGATT
TCTAGACAGGGAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACA
TTATATAAAGCTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGG
ATCAGAGAAGATTGGGATATCAGAAAATTGTGTTGTGGaaaaATCATGAG
TCAAAAAGAGAGGGACATTGCTGCTTTGGCGAAAACCATTTATGGAGAAG
CAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTC
AACCGATTCCATTCTAATAAGTCATGGTTGAAAGGAGACACAATCGAGGC
AACATGTAAAAAACCACAACAATATTCATGCTGGAATTCTAATGACATCA
ACGCAAGTAAACTCCAAAATGCCGGCGCCGAATTCTATCAAATTGCGAAA
GAAGTTATTGATGGACATCACCATGACAATACAAGAGGGGCGTTACATTA
CCATGCTGATTACGCCAAGGCGGCACACCAATGGGCAGATAACAAAACAC
CGTGTGCGACTATCGGTGCCCATATGTTTTATAATAATATagattgattt
gaaaaatcttttatttacactcctgtctcacagccccggtggaacttttt
cccacaatGGGGATAAAAGTTTCTATCAaagtcccaatggggatagaaat
tctattgttctcgaGCTTAAAATATCCCAGaatatccagtggggatggtt
ttggacagcaaatttttgcattgaatttcgaatggggatgaaatcaaagt
caatttcccagtggggctgaaattgtagggtattttgtcCACCGGGGATA
AAATTTTAGctaaatttttcagtggggctatGGGGTCCCAGcgagtctgt
gacacaggggtctTTCATTCTTTCTTACAGTCAGTGTACTAATTTTGTCA
AGATGGTACATTTGAGGGTGAGCTGCAAAAAGTCATACAGTATAAATTGA
AATTGtgatcgtaagaacatttatcAGAGGTCAAATCGAGGGTTCTTTCC
TCATTGAATATCCAGATATTTCATTGTTGACTGAATGATACTTAACTATA
TTATCGGCCTTTTATTTTTTACCAGACCAAAGAGATAATTGAGGTGACAC
GGAAAGAAAATTTAGGGCTGTATAAATTACTCTTGTTTGCCATTGCTATT
TTCTTTACTGTAGAATCTTTTGTGTAATTAGAtccgaaaaatattttccc
cgatCAGGGGCACTATACGTTTTCctacttttattacaaaaacaTACATA
ATGGGGTGGCTCAACTCTCAAATCTCTAACAGAGTgcatctcacgtttat
cgtttgTAGTACataccagacgtaattaatcaaACAGTTCGTTCGATTAC
CAGAACTTATCAAACCTTGTCGAACTTATTAATCGGACAACAaatgacaa
agttcgattaaaaataccgttcgattggttcgattaattacaTCTGGTAT
ATAGtgcggcaatgaattttgagaTTCGTTCGATAAAgttctttgaattt
ttatgaTTAGGTTTGTTAAACCtaaagaaattcttaaaatgTTACTCCTA
AAgtgactttttacaaaaatttctttgctctcgtggaaaaaatattttag
tttttgaaaaaaaatcttttttaattttttatgaataataTTGTTTTTTA
ACATGGAAATTGATTAACCAGATCAGCCTGCTAACTGAGCTGGCTCTATT
TTCTAAGCAAATCAATTGACCAGTAGTTTTAAAactgggaaaaaaaattt
tcttcagtgGATTTCTTTTCTTTCGCGAGCGACAGTTCGATTTTGATCGA
GGTTTCGATCGTAAATCGATCGATTGACACattcctgtctcacagccccg
gtggtaCTTT
Run BLAST on NCBI

protein sequence of TCONS_00001495-protein

>TCONS_00001495-protein ID=TCONS_00001495-protein|Name=TCONS_00001495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSQKERDIAALAKTIYGEARGETREGQYAVAHSVVNRFHSNKSWLKGDTI
EATCKKPQQYSCWNSNDINASKLQNAGAEFYQIAKEVIDGHHHDNTRGAL
HYHADYAKAAHQWADNKTPCATIGAHMFYNNID
Run BLAST on NCBI

transcript from alignment at sc0000010:638305..643135-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001495 ID=TCONS_00001495|Name=TCONS_00001495|organism=Clytia hemisphaerica|type=transcript|length=4831bp|location=Sequence derived from alignment at sc0000010:638305..643135- (Clytia hemisphaerica)
AGAGAAAGTTAATCGATTCCGTGTCGATATCAACAACAATTATATCGATT TCTAGACAGGGAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACA TTATATAAAGCTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGG ATCAGAGAAGATTGGGATATCAGAAAATTGTGTTGTGGAAAAGTAAGTTT TTATTTCTCAAAATATGCGAACATTATTGCCCTCTAGACGAGCTGACCCA AAATGCAACCACATTTGAGTAGCCTGAATATCCAGGCTGTAGAATTTTTT GATTTATCGCTTTGAAAGCGCTTTGTATTTTAAAATTTCAAATTAGTAGC ATTTTCCAATTTTTGGCTGGTTTGTAAAATACACGACACCGACCGAAGAG TAAAAATGTATGTCACGTGGATTTGCTTCACAAAATTTGACCAAAAAAGA TGAATGCGAGAAAAAGTTATATGGGCCTAAATACGAAGTCATATTTGGTG ACAATTTGCAAAATTTCATTATGAACATTTCAAAAGTTATGAAGATCGAT GGAAAAGTGACGCATTGGGTTAAAGATAAGAAAAATTGCACAATATTCTT AATTATCTTCTAAATTTCACGCAGTATTAATACTGGATACGTCTACAAAC CCTTAGCGGGCGGCGTACTCGTTAAAAACCCTCTTCCCCTTGCAAGGCGA TCGCTGCCTTAGGTGTTTATAACAGTAAACATAATTCTCATTAACAGATC ATGAGTCAAAAAGAGAGGGACATTGCTGCGTTGGCGAAAACCATTTATGG AGAAGCAAGAGGGGAAACGCGAGAGGGACAGTACGCAGTTGCACATTCTG TTGTCAACCGATTCCATTCTAATAAGTCATGGTTGAAAGGTTGGTATATC TTATTTTATGCGTGGTAATTAAACCAGTAGAATCTAATTGTCTTGAAATC TCGTTGAGAGTAGAACAGCGATCTATCTTCATAATGTACAGTGCCGTAGG GAAGCATTTTGATATTGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNAATTTTCTCGGGGGCAGTTTTTCTAGAAC CAGGTTCTGCATAGGCTAGTTCTGCATGGAATTATTTCACCCTAAATTTC AGAACATACAAGGCAATTTGGAGGATTGATTGAAAAAATATATACTTTGA AATATATTTTCCTGGCAAATCTTCAAAGCTTCATGAAATTCTTTTTCATT CTTCAAAGGAATTTCAGTACTTATCCTACCACGCCTTACTTAAGATTTAA GATCTCTTATTGAACCAAAGCCAAACAGATTTCAATAGATTTATTTTATC AAAACTAAGATTTTGCCCAGTTAGAGACCATGACTATAAATACTTATTTT AGACCACTTCCTATAAAACAAAACAATCCCAAAGCTTATTATTATTATTA TGGCGAGCTACTTAAATATTTTAAAATGTCGTTCAGGCAACCCCGTCTCT GTAACCCAATATAGTCTTGCTTCGAAGGTTACAGCCTCTAGAAGGCAGCT CGTTTGAGTCGAAAAACCTCCCTTTTTTCTCTATAAAGGTTAACCATTGG ACCTAAAACTTATGTACATCTGAAATCAGTAGGCTCTAAAGTACCTATGT ATCGAGAATACAGTTTCTAGCACTAAATTCAGTTTTTTCTTCTTCATTTT TCGTCTTTGTTTTATAAAATTTTTAGAATATAATTTTTTAAACGGTATAC TATCTGTAAGATTTGAAGCATTCGTTTAAAAATGGTAAGCGAGACAAACA ATAGTGCATACTTAAAGTCAATAGATTTGTTACCAAGTTACTTTGTTTAT GAAGAAATCAAATACAGCTTTATATTACAATGCTCTTGTTTCTGGGAATT CTAAAATGATCGAAAATGACAAACAAGAAAAAACATATTTTCAAGATTTT GACCATAAAAGTACACGAGAAGAGAAAGTTAATCGATTCCGTGTCGATAT CAACAACAATTATATCGATTTCTAGACAGGGAAATTCTTAAGGGAATTCC AAAACGAACTTCCAAACACATTATATAAAGCTGCTGGTTTTGGTGAATAT TTCAAAACGCTTTTTGATGGATCAGAGAAGATTGGGAGAGAAAATTGTGT TGTGGAAAAGTAAGTTTTTATTTCTCAAAATATGCGAACATATTGCCCTC TAGACGAGCTGACCCAAAATGCAACCACTTTTGAGTAGCCTGAATATCCA GGCTGTAGAATTTTTTGGTTTATCGCCTTGAAAGCGCTTTGGATTTTAAA ATTTCAAATCAGTAGCATTTTCCAATTTTTGGCTGGTTTGTAAAATACAC GACACCGACAGAAGAGTAAAAATGTATGTCACGTGGATTTGCTTCACAAA ATTTGACCAAAAAAGATGAATGCGAGAAAAAGTTATATGGGCCTAGATAC GAAGTCATATTTGGTGACAATTTGCAAATTATGAACATTTCAAAAGTTAT GAAGATCGATGGAAAAGTGACGCATTTGGTTAAAGATAAGAAAAATTGCA CAATATTCTTAATTATCTTTTGAATTTCACGCAGTATTAATAGTGGATAC GTCTACAAACCCTTAGCGGGCGGCGTACTCGTCAAAAACCCTCTTCCCCT TGCAAGGCGATCGCTGCCTTAGGTGTTTATAACAGTAAACATAATTCTCA TTAACAGATCATGAGTCAAAAAGAGAGAGACATTGCTGCTTTGGCGAAAA CCATTTATGGAGAAGCAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTT GCACATTCTGTTGTCAACCGATTCCATTCTAATAAGTCATGGTTGAAAGG TTGGTATATCTTATTTTATGTGTGGTAATTAAACCAGTAGAAATCTAAAT GTCTTGAAATCTCGTTGAGAGTAGAACAGCGATCTATCTTCATAATGTAC AGTGCCGTAGGGAAGCATTTTGATATTGTAAATTTTGAAATCTAGAGCTC TAAATTGGCTAAAAACATACTCAAAAAATAAATAAAAAAATAAATAATAA AATGATTCGAATAAAGGCAAATTTTAAAGGTAAAATACTCCATTTTATGA AAAATCACTCTTATTTTTAATTACTGGGGAGGGGGGGGGGGCTAAGCCCC CCCTAGCCCCCTAGCACTCTCTTTATACAAACACTAAGTAAATCTTTCAA TTTAGGAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCAT GCTGGAATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCC GAATTCTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAA TACAAGAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACC AATGGGCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTT TATAATAATATAGATTGATTTGAAAAATCTTTTATTTACACTCCTGTCTC ACAGCCCCGGTGGAACTTTTTCCCACAATGGGGATAAAAGTTTCTATCAA AGTCCCAATGGGGATAGAAATTCTATTGTTCTCGAGCTTAAAATATCCCA GAATATCCAGTGGGGATGGTTTTGGACAGCAAATTTTTGCATTGAATTTC GAATGGGGATGAAATCAAAGTCAATTTCCCAGTGGGGCTGAAATTGTAGG GTATTTTGTCCACCGGGGATAAAATTTTAGCTAAATTTTTCAGTGGGGCT ATGGGGTCCCAGCGAGTCTGTGACACAGGGGTCTTTCATTCTTTCTTACA GTCAGTGTACTAATTTTGTCAAGATGGTACATTTGAGGGTGAGCTGCAAA AAGTCATACAGTATAAATTGAAATTGTGATCGTAAGAACATTTATCAGAG GTCAAATCGAGGGTTCTTTCCTCATTGAATATCCAGATATTTCATTGTTG ACTGAATGATACTTAACTATATTATCGGCCTTTTATTTTTTACCAGACCA AAGAGATAATTGAGGTGACACGGAAAGAAAATTTAGGGCTGTATAAATTA CTCTTGTTTGCCATTGCTATTTTCTTTACTGTAGAATCTTTTGTGTAATT AGATCCGAAAAATATTTTCCCCGATCAGGGGCACTATACGTTTTCCTACT TTTATTACAAAAACATACATAATGGGGTGGCTCAACTCTCAAATCTCTAA CAGAGTGCATCTCACGTTTATCGTTTGTAGTACATACCAGACGTAATTAA TCAAACAGTTCGTTCGATTACCAGAACTTATCAAACCTTGTCGAACTTAT TAATCGGACAACAAATGACAAAGTTCGATTAAAAATACCGTTCGATTGGT TCGATTAATTACATCTGGTATATAGTGCGGCAATGAATTTTGAGATTCGT TCGATAAAGTTCTTTGAATTTTTATGATTAGGTTTGTTAAACCTAAAGAA ATTCTTAAAATGTTACTCCTAAAGTGACTTTTTACAAAAATTTCTTTGCT CTCGTGGAAAAAATATTTTAGTTTTTGAAAAAAAATCTTTTTTAATTTTT TATGAATAATATTGTTTTTTAACATGGAAATTGATTAACCAGATCAGCCT GCTAACTGAGCTGGCTCTATTTTCTAAGCAAATCAATTGACCAGTAGTTT TAAAACTGGGAAAAAAAATTTTCTTCAGTGGATTTCTTTTCTTTCGCGAG CGACAGTTCGATTTTGATCGAGGTTTCGATCGTAAATCGATCGATTGACA CATTCCTGTCTCACAGCCCCGGTGGTACTTT

Coding sequence (CDS) from alignment at sc0000010:638305..643135-

>TCONS_00001495 ID=TCONS_00001495|Name=TCONS_00001495|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000010:638305..643135- (Clytia hemisphaerica)
GAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATGCTGG
AATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCGAATT
CTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAATACAA
GAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCAATGG
GCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTTATAA
TAATATAGATTGAATTGCTGCTTTGGCGAAAACCATTTATGGAGAAGCAA
GAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTCAAC
CGATTCCATTCTAATAAGTCATGGTTGAAAGATGAGTCAAAAAGAGAGGG
ACGAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATGCT
GGAATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCGAA
TTCTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAATAC
AAGAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCAAT
GGGCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTTAT
AATAATATAGATTGAATTGCTGCTTTGGCGAAAACCATTTATGGAGAAGC
AAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTCA
ACCGATTCCATTCTAATAAGTCATGGTTGAAAGATGAGTCAAAAAGAGAG
GGACGAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATG
CTGGAATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCG
AATTCTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAAT
ACAAGAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCA
ATGGGCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTT
ATAATAATATAGATTGAATTGCTGCTTTGGCGAAAACCATTTATGGAGAA
GCAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGT
CAACCGATTCCATTCTAATAAGTCATGGTTGAAAGATGAGTCAAAAAGAG
AGGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000759XLOC_000759Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001495-proteinTCONS_00001495-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001495-exon-sc0000010-1575043694:642944..643135TCONS_00001495-exon-sc0000010-1575043694:642944..643135Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1575043694:642365..642388TCONS_00001495-exon-sc0000010-1575043694:642365..642388Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1575043694:640237..640354TCONS_00001495-exon-sc0000010-1575043694:640237..640354Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1575043694:638305..639880TCONS_00001495-exon-sc0000010-1575043694:638305..639880Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1510915933:642944..643135TCONS_00001495-exon-sc0000010-1510915933:642944..643135Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1510915933:642365..642388TCONS_00001495-exon-sc0000010-1510915933:642365..642388Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1510915933:640237..640354TCONS_00001495-exon-sc0000010-1510915933:640237..640354Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1510915933:638305..639880TCONS_00001495-exon-sc0000010-1510915933:638305..639880Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1491911889:642944..643135TCONS_00001495-exon-sc0000010-1491911889:642944..643135Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1491911889:642365..642388TCONS_00001495-exon-sc0000010-1491911889:642365..642388Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1491911889:640237..640354TCONS_00001495-exon-sc0000010-1491911889:640237..640354Clytia hemisphaericaexon
TCONS_00001495-exon-sc0000010-1491911889:638305..639880TCONS_00001495-exon-sc0000010-1491911889:638305..639880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:638305..643135 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.42533 2.81613 4.30674 5.0665 1.20614 0.953111 0 0.358837 1.32993 4.44361 1.60665 1.64415 12.5034 7.95484 81.5195 41.1089 42.8492 51.7951 18.1823 16.9057 5.18852 4.14992 43.747 38.2324 92.6714 49.2489 149.55 237.674 159.024 154.801
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011105Cell_wall_hydrolase_SleB
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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