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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001495 ID=TCONS_00001495|Name=TCONS_00001495|organism=Clytia hemisphaerica|type=transcript|length=1910bp
AGAGAAAGTTAATCGATTCCGTGTCGATATCAACAACAATTATATCGATT
TCTAGACAGGGAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACA
TTATATAAAGCTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGG
ATCAGAGAAGATTGGGATATCAGAAAATTGTGTTGTGGaaaaATCATGAG
TCAAAAAGAGAGGGACATTGCTGCTTTGGCGAAAACCATTTATGGAGAAG
CAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTC
AACCGATTCCATTCTAATAAGTCATGGTTGAAAGGAGACACAATCGAGGC
AACATGTAAAAAACCACAACAATATTCATGCTGGAATTCTAATGACATCA
ACGCAAGTAAACTCCAAAATGCCGGCGCCGAATTCTATCAAATTGCGAAA
GAAGTTATTGATGGACATCACCATGACAATACAAGAGGGGCGTTACATTA
CCATGCTGATTACGCCAAGGCGGCACACCAATGGGCAGATAACAAAACAC
CGTGTGCGACTATCGGTGCCCATATGTTTTATAATAATATagattgattt
gaaaaatcttttatttacactcctgtctcacagccccggtggaacttttt
cccacaatGGGGATAAAAGTTTCTATCAaagtcccaatggggatagaaat
tctattgttctcgaGCTTAAAATATCCCAGaatatccagtggggatggtt
ttggacagcaaatttttgcattgaatttcgaatggggatgaaatcaaagt
caatttcccagtggggctgaaattgtagggtattttgtcCACCGGGGATA
AAATTTTAGctaaatttttcagtggggctatGGGGTCCCAGcgagtctgt
gacacaggggtctTTCATTCTTTCTTACAGTCAGTGTACTAATTTTGTCA
AGATGGTACATTTGAGGGTGAGCTGCAAAAAGTCATACAGTATAAATTGA
AATTGtgatcgtaagaacatttatcAGAGGTCAAATCGAGGGTTCTTTCC
TCATTGAATATCCAGATATTTCATTGTTGACTGAATGATACTTAACTATA
TTATCGGCCTTTTATTTTTTACCAGACCAAAGAGATAATTGAGGTGACAC
GGAAAGAAAATTTAGGGCTGTATAAATTACTCTTGTTTGCCATTGCTATT
TTCTTTACTGTAGAATCTTTTGTGTAATTAGAtccgaaaaatattttccc
cgatCAGGGGCACTATACGTTTTCctacttttattacaaaaacaTACATA
ATGGGGTGGCTCAACTCTCAAATCTCTAACAGAGTgcatctcacgtttat
cgtttgTAGTACataccagacgtaattaatcaaACAGTTCGTTCGATTAC
CAGAACTTATCAAACCTTGTCGAACTTATTAATCGGACAACAaatgacaa
agttcgattaaaaataccgttcgattggttcgattaattacaTCTGGTAT
ATAGtgcggcaatgaattttgagaTTCGTTCGATAAAgttctttgaattt
ttatgaTTAGGTTTGTTAAACCtaaagaaattcttaaaatgTTACTCCTA
AAgtgactttttacaaaaatttctttgctctcgtggaaaaaatattttag
tttttgaaaaaaaatcttttttaattttttatgaataataTTGTTTTTTA
ACATGGAAATTGATTAACCAGATCAGCCTGCTAACTGAGCTGGCTCTATT
TTCTAAGCAAATCAATTGACCAGTAGTTTTAAAactgggaaaaaaaattt
tcttcagtgGATTTCTTTTCTTTCGCGAGCGACAGTTCGATTTTGATCGA
GGTTTCGATCGTAAATCGATCGATTGACACattcctgtctcacagccccg
gtggtaCTTT Run BLAST on NCBI protein sequence of TCONS_00001495-protein >TCONS_00001495-protein ID=TCONS_00001495-protein|Name=TCONS_00001495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSQKERDIAALAKTIYGEARGETREGQYAVAHSVVNRFHSNKSWLKGDTI
EATCKKPQQYSCWNSNDINASKLQNAGAEFYQIAKEVIDGHHHDNTRGAL
HYHADYAKAAHQWADNKTPCATIGAHMFYNNID Run BLAST on NCBI transcript from alignment at sc0000010:638305..643135- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001495 ID=TCONS_00001495|Name=TCONS_00001495|organism=Clytia hemisphaerica|type=transcript|length=4831bp|location=Sequence derived from alignment at sc0000010:638305..643135- (Clytia hemisphaerica)
AGAGAAAGTTAATCGATTCCGTGTCGATATCAACAACAATTATATCGATT
TCTAGACAGGGAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACA
TTATATAAAGCTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGG
ATCAGAGAAGATTGGGATATCAGAAAATTGTGTTGTGGAAAAGTAAGTTT
TTATTTCTCAAAATATGCGAACATTATTGCCCTCTAGACGAGCTGACCCA
AAATGCAACCACATTTGAGTAGCCTGAATATCCAGGCTGTAGAATTTTTT
GATTTATCGCTTTGAAAGCGCTTTGTATTTTAAAATTTCAAATTAGTAGC
ATTTTCCAATTTTTGGCTGGTTTGTAAAATACACGACACCGACCGAAGAG
TAAAAATGTATGTCACGTGGATTTGCTTCACAAAATTTGACCAAAAAAGA
TGAATGCGAGAAAAAGTTATATGGGCCTAAATACGAAGTCATATTTGGTG
ACAATTTGCAAAATTTCATTATGAACATTTCAAAAGTTATGAAGATCGAT
GGAAAAGTGACGCATTGGGTTAAAGATAAGAAAAATTGCACAATATTCTT
AATTATCTTCTAAATTTCACGCAGTATTAATACTGGATACGTCTACAAAC
CCTTAGCGGGCGGCGTACTCGTTAAAAACCCTCTTCCCCTTGCAAGGCGA
TCGCTGCCTTAGGTGTTTATAACAGTAAACATAATTCTCATTAACAGATC
ATGAGTCAAAAAGAGAGGGACATTGCTGCGTTGGCGAAAACCATTTATGG
AGAAGCAAGAGGGGAAACGCGAGAGGGACAGTACGCAGTTGCACATTCTG
TTGTCAACCGATTCCATTCTAATAAGTCATGGTTGAAAGGTTGGTATATC
TTATTTTATGCGTGGTAATTAAACCAGTAGAATCTAATTGTCTTGAAATC
TCGTTGAGAGTAGAACAGCGATCTATCTTCATAATGTACAGTGCCGTAGG
GAAGCATTTTGATATTGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAATTTTCTCGGGGGCAGTTTTTCTAGAAC
CAGGTTCTGCATAGGCTAGTTCTGCATGGAATTATTTCACCCTAAATTTC
AGAACATACAAGGCAATTTGGAGGATTGATTGAAAAAATATATACTTTGA
AATATATTTTCCTGGCAAATCTTCAAAGCTTCATGAAATTCTTTTTCATT
CTTCAAAGGAATTTCAGTACTTATCCTACCACGCCTTACTTAAGATTTAA
GATCTCTTATTGAACCAAAGCCAAACAGATTTCAATAGATTTATTTTATC
AAAACTAAGATTTTGCCCAGTTAGAGACCATGACTATAAATACTTATTTT
AGACCACTTCCTATAAAACAAAACAATCCCAAAGCTTATTATTATTATTA
TGGCGAGCTACTTAAATATTTTAAAATGTCGTTCAGGCAACCCCGTCTCT
GTAACCCAATATAGTCTTGCTTCGAAGGTTACAGCCTCTAGAAGGCAGCT
CGTTTGAGTCGAAAAACCTCCCTTTTTTCTCTATAAAGGTTAACCATTGG
ACCTAAAACTTATGTACATCTGAAATCAGTAGGCTCTAAAGTACCTATGT
ATCGAGAATACAGTTTCTAGCACTAAATTCAGTTTTTTCTTCTTCATTTT
TCGTCTTTGTTTTATAAAATTTTTAGAATATAATTTTTTAAACGGTATAC
TATCTGTAAGATTTGAAGCATTCGTTTAAAAATGGTAAGCGAGACAAACA
ATAGTGCATACTTAAAGTCAATAGATTTGTTACCAAGTTACTTTGTTTAT
GAAGAAATCAAATACAGCTTTATATTACAATGCTCTTGTTTCTGGGAATT
CTAAAATGATCGAAAATGACAAACAAGAAAAAACATATTTTCAAGATTTT
GACCATAAAAGTACACGAGAAGAGAAAGTTAATCGATTCCGTGTCGATAT
CAACAACAATTATATCGATTTCTAGACAGGGAAATTCTTAAGGGAATTCC
AAAACGAACTTCCAAACACATTATATAAAGCTGCTGGTTTTGGTGAATAT
TTCAAAACGCTTTTTGATGGATCAGAGAAGATTGGGAGAGAAAATTGTGT
TGTGGAAAAGTAAGTTTTTATTTCTCAAAATATGCGAACATATTGCCCTC
TAGACGAGCTGACCCAAAATGCAACCACTTTTGAGTAGCCTGAATATCCA
GGCTGTAGAATTTTTTGGTTTATCGCCTTGAAAGCGCTTTGGATTTTAAA
ATTTCAAATCAGTAGCATTTTCCAATTTTTGGCTGGTTTGTAAAATACAC
GACACCGACAGAAGAGTAAAAATGTATGTCACGTGGATTTGCTTCACAAA
ATTTGACCAAAAAAGATGAATGCGAGAAAAAGTTATATGGGCCTAGATAC
GAAGTCATATTTGGTGACAATTTGCAAATTATGAACATTTCAAAAGTTAT
GAAGATCGATGGAAAAGTGACGCATTTGGTTAAAGATAAGAAAAATTGCA
CAATATTCTTAATTATCTTTTGAATTTCACGCAGTATTAATAGTGGATAC
GTCTACAAACCCTTAGCGGGCGGCGTACTCGTCAAAAACCCTCTTCCCCT
TGCAAGGCGATCGCTGCCTTAGGTGTTTATAACAGTAAACATAATTCTCA
TTAACAGATCATGAGTCAAAAAGAGAGAGACATTGCTGCTTTGGCGAAAA
CCATTTATGGAGAAGCAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTT
GCACATTCTGTTGTCAACCGATTCCATTCTAATAAGTCATGGTTGAAAGG
TTGGTATATCTTATTTTATGTGTGGTAATTAAACCAGTAGAAATCTAAAT
GTCTTGAAATCTCGTTGAGAGTAGAACAGCGATCTATCTTCATAATGTAC
AGTGCCGTAGGGAAGCATTTTGATATTGTAAATTTTGAAATCTAGAGCTC
TAAATTGGCTAAAAACATACTCAAAAAATAAATAAAAAAATAAATAATAA
AATGATTCGAATAAAGGCAAATTTTAAAGGTAAAATACTCCATTTTATGA
AAAATCACTCTTATTTTTAATTACTGGGGAGGGGGGGGGGGCTAAGCCCC
CCCTAGCCCCCTAGCACTCTCTTTATACAAACACTAAGTAAATCTTTCAA
TTTAGGAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCAT
GCTGGAATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCC
GAATTCTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAA
TACAAGAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACC
AATGGGCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTT
TATAATAATATAGATTGATTTGAAAAATCTTTTATTTACACTCCTGTCTC
ACAGCCCCGGTGGAACTTTTTCCCACAATGGGGATAAAAGTTTCTATCAA
AGTCCCAATGGGGATAGAAATTCTATTGTTCTCGAGCTTAAAATATCCCA
GAATATCCAGTGGGGATGGTTTTGGACAGCAAATTTTTGCATTGAATTTC
GAATGGGGATGAAATCAAAGTCAATTTCCCAGTGGGGCTGAAATTGTAGG
GTATTTTGTCCACCGGGGATAAAATTTTAGCTAAATTTTTCAGTGGGGCT
ATGGGGTCCCAGCGAGTCTGTGACACAGGGGTCTTTCATTCTTTCTTACA
GTCAGTGTACTAATTTTGTCAAGATGGTACATTTGAGGGTGAGCTGCAAA
AAGTCATACAGTATAAATTGAAATTGTGATCGTAAGAACATTTATCAGAG
GTCAAATCGAGGGTTCTTTCCTCATTGAATATCCAGATATTTCATTGTTG
ACTGAATGATACTTAACTATATTATCGGCCTTTTATTTTTTACCAGACCA
AAGAGATAATTGAGGTGACACGGAAAGAAAATTTAGGGCTGTATAAATTA
CTCTTGTTTGCCATTGCTATTTTCTTTACTGTAGAATCTTTTGTGTAATT
AGATCCGAAAAATATTTTCCCCGATCAGGGGCACTATACGTTTTCCTACT
TTTATTACAAAAACATACATAATGGGGTGGCTCAACTCTCAAATCTCTAA
CAGAGTGCATCTCACGTTTATCGTTTGTAGTACATACCAGACGTAATTAA
TCAAACAGTTCGTTCGATTACCAGAACTTATCAAACCTTGTCGAACTTAT
TAATCGGACAACAAATGACAAAGTTCGATTAAAAATACCGTTCGATTGGT
TCGATTAATTACATCTGGTATATAGTGCGGCAATGAATTTTGAGATTCGT
TCGATAAAGTTCTTTGAATTTTTATGATTAGGTTTGTTAAACCTAAAGAA
ATTCTTAAAATGTTACTCCTAAAGTGACTTTTTACAAAAATTTCTTTGCT
CTCGTGGAAAAAATATTTTAGTTTTTGAAAAAAAATCTTTTTTAATTTTT
TATGAATAATATTGTTTTTTAACATGGAAATTGATTAACCAGATCAGCCT
GCTAACTGAGCTGGCTCTATTTTCTAAGCAAATCAATTGACCAGTAGTTT
TAAAACTGGGAAAAAAAATTTTCTTCAGTGGATTTCTTTTCTTTCGCGAG
CGACAGTTCGATTTTGATCGAGGTTTCGATCGTAAATCGATCGATTGACA
CATTCCTGTCTCACAGCCCCGGTGGTACTTT Coding sequence (CDS) from alignment at sc0000010:638305..643135- >TCONS_00001495 ID=TCONS_00001495|Name=TCONS_00001495|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000010:638305..643135- (Clytia hemisphaerica)
GAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATGCTGG
AATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCGAATT
CTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAATACAA
GAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCAATGG
GCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTTATAA
TAATATAGATTGAATTGCTGCTTTGGCGAAAACCATTTATGGAGAAGCAA
GAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTCAAC
CGATTCCATTCTAATAAGTCATGGTTGAAAGATGAGTCAAAAAGAGAGGG
ACGAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATGCT
GGAATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCGAA
TTCTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAATAC
AAGAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCAAT
GGGCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTTAT
AATAATATAGATTGAATTGCTGCTTTGGCGAAAACCATTTATGGAGAAGC
AAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTCA
ACCGATTCCATTCTAATAAGTCATGGTTGAAAGATGAGTCAAAAAGAGAG
GGACGAGACACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATG
CTGGAATTCTAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCG
AATTCTATCAAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAAT
ACAAGAGGGGCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCA
ATGGGCAGATAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTT
ATAATAATATAGATTGAATTGCTGCTTTGGCGAAAACCATTTATGGAGAA
GCAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGT
CAACCGATTCCATTCTAATAAGTCATGGTTGAAAGATGAGTCAAAAAGAG
AGGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001495-exon-sc0000010-1575043694:642944..643135 | TCONS_00001495-exon-sc0000010-1575043694:642944..643135 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1575043694:642365..642388 | TCONS_00001495-exon-sc0000010-1575043694:642365..642388 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1575043694:640237..640354 | TCONS_00001495-exon-sc0000010-1575043694:640237..640354 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1575043694:638305..639880 | TCONS_00001495-exon-sc0000010-1575043694:638305..639880 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1510915933:642944..643135 | TCONS_00001495-exon-sc0000010-1510915933:642944..643135 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1510915933:642365..642388 | TCONS_00001495-exon-sc0000010-1510915933:642365..642388 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1510915933:640237..640354 | TCONS_00001495-exon-sc0000010-1510915933:640237..640354 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1510915933:638305..639880 | TCONS_00001495-exon-sc0000010-1510915933:638305..639880 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1491911889:642944..643135 | TCONS_00001495-exon-sc0000010-1491911889:642944..643135 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1491911889:642365..642388 | TCONS_00001495-exon-sc0000010-1491911889:642365..642388 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1491911889:640237..640354 | TCONS_00001495-exon-sc0000010-1491911889:640237..640354 | Clytia hemisphaerica | exon |
| TCONS_00001495-exon-sc0000010-1491911889:638305..639880 | TCONS_00001495-exon-sc0000010-1491911889:638305..639880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:638305..643135 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011105 | Cell_wall_hydrolase_SleB |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
Blast
The following BLAST results are available for this feature:
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