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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001483 ID=TCONS_00001483|Name=TCONS_00001483|organism=Clytia hemisphaerica|type=transcript|length=2643bpRun BLAST on NCBI protein sequence of TCONS_00001483-protein >TCONS_00001483-protein ID=TCONS_00001483-protein|Name=TCONS_00001483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp FFRKKVLIMSFQPFSRLCVQRLTHLLELDSLEAFQTLEDCPYVAKNIQIERun BLAST on NCBI transcript from alignment at sc0000010:457144..473422- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001483 ID=TCONS_00001483|Name=TCONS_00001483|organism=Clytia hemisphaerica|type=transcript|length=16279bp|location=Sequence derived from alignment at sc0000010:457144..473422- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:457144..473422- >TCONS_00001483 ID=TCONS_00001483|Name=TCONS_00001483|organism=Clytia hemisphaerica|type=CDS|length=19116bp|location=Sequence derived from alignment at sc0000010:457144..473422- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001483 vs. Swiss-Prot (Human)
Match: RHG19 (Rho GTPase-activating protein 19 OS=Homo sapiens GN=ARHGAP19 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 7.641e-25 Identity = 110/400 (27.50%), Postives = 204/400 (51.00%), Query Frame = 3
Query: 3 FFRKKVLIMSFQPFSRLCVQRLTHLLELDSLEAFQTLEDCPYVAKNIQIEDQLPFDNIERSSNNVLKNSKSPKAQVKKIFKNISKKEMPTVFGQAVTEDTLLMIIQLIDHLKMYASTEGLFRISGNKKRQEELKTVLNQNKALHLDSEDCPYNAHDIAGVLKHFFGELPEPLLTKSCYVCYQQLAGKLKEMD-----SITRYKKKVETXXXXXXXXXXXXXXXXXXXXXXXTVVA-AQETSKMTAYNLGVIFAPNVVCTRQPMGCLSDFTENVEPFTDLVKFIIENSEEVFTIPEDFLEDGKKYINNAVTD------------HDVELPMSRAYCQ-QIDSRQFAKESKDNTHQELMMLYNQMMELPDGQLKNDFLEKF-RQSYPGTPMFIPKSVKEKQR 1142
FF +K+ + F+ L V +T L++L E Q + + ++ +LP P + + ++ +KE +FG +TE+ + I QLI++L EGLFR+ GN RQ+ L+ LN + L+S + ++++D+A +LK F GELPEPLLT + + ++A ++ D +I +++E L++LFL+LPP NR LLK L++LL A Q+ +KM+AYNL ++FAP+V+ + +D EN+ + F+I++S+++F P E + + + T H ++++ + ++DS +E++ +T + L L+ + ++P+ K + +F +QS TP P + + ++R
Sbjct: 44 FFVEKLRHEKPEIFTELVVSNITRLIDLPGTELAQLMGE---------VDLKLP-------------GGAGPASGFFRSLMSLKRKEKGVIFGSPLTEEGIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGE--FHSNDVATLLKMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNRNLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTA--NDLQENITKLNSGMAFMIKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCPHQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKR 417 The following BLAST results are available for this feature:
BLAST of TCONS_00001483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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