TCONS_00001483-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001483-protein
Unique Name	TCONS_00001483-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	707

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001483-protein ID=TCONS_00001483-protein|Name=TCONS_00001483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp
FFRKKVLIMSFQPFSRLCVQRLTHLLELDSLEAFQTLEDCPYVAKNIQIE
DQLPFDNIERSSNNVLKNSKSPKAQVKKIFKNISKKEMPTVFGQAVTEDT
LLMIIQLIDHLKMYASTEGLFRISGNKKRQEELKTVLNQNKALHLDSEDC
PYNAHDIAGVLKHFFGELPEPLLTKSCYVCYQQLAGKLKEMDSITRYKKK
VETLKMLFLLLPPLNRLLLKKLVELLTVVAAQETSKMTAYNLGVIFAPNV
VCTRQPMGCLSDFTENVEPFTDLVKFIIENSEEVFTIPEDFLEDGKKYIN
NAVTDHDVELPMSRAYCQQIDSRQFAKESKDNTHQELMMLYNQMMELPDG
QLKNDFLEKFRQSYPGTPMFIPKSVKEKQRDSLPCTPQPRSKFGGCLNRP
SSSSVKKAASENFLDSIDSNKDVPRSSIIDTPGRSEDNILAAFSNSNILN
TTGTPGRIKKFCKRVRRRSVEIFTLKKDKDEVDDENQVSVDDSQANSSRL
RSVFGGSIRKPGPSWKGLKKSVSTPSLSTRRKSSNSDSEEDLSKRKLSFS
SEVDIHKMKSKPVETKDPVFDKGIVNDAFQDKENITDNLNMNPKTPVIRK
VLCPSTSSAVRMRNDEKPAAANVLQSIDNTPKIMKSARNEGAVGTLKMKA
KGFRMSGHFKRMTSLPSKGSPAVKQSSKDKDKGNKENSVVSTNTTKRKEN
ICTVTTV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000754	XLOC_000754	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001483	TCONS_00001483	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000198	RhoGAP_dom
IPR008936	Rho_GTPase_activation_prot

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000198	Rho GTPase-activating protein domain	SMART	SM00324	RhoGAP_3	coord: 98..282 e-value: 1.2E-28 score: 111.2
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 104..253 e-value: 1.3E-29 score: 102.9
IPR000198	Rho GTPase-activating protein domain	PROSITE	PS50238	RHOGAP	coord: 74..285 score: 32.36
None	No IPR available	GENE3D	1.10.555.10		coord: 52..299 e-value: 2.2E-43 score: 147.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 375..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..545
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 660..707
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 104..289

Blast

[Close]

BLAST of TCONS_00001483-protein vs. Swiss-Prot (Human)
Match: RHG19 (Rho GTPase-activating protein 19 OS=Homo sapiens GN=ARHGAP19 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.970e-35
Identity = 127/481 (26.40%), Postives = 228/481 (47.40%), Query Frame = 0

Query:    1 FFRKKVLIMSFQPFSRLCVQRLTHLLELDSLEAFQTLEDCPYVAKNIQIEDQLPFDNIERSSNNVLKNSKSPKAQVKKIFKNISKKEMPTVFGQAVTEDTLLMIIQLIDHLKMYASTEGLFRISGNKKRQEELKTVLNQNKALHLDSEDCPYNAHDIAGVLKHFFGELPEPLLTKSCYVCYQQLAGKLKEMD-----SITRYKKKVETLKMLFLLLPPLNR-LLLKKLVELLTVVAAQETSKMTAYNLGVIFAPNVVCTRQPMGCLSDFTENVEPFTDLVKFIIENSEEVFTIPEDFLEDGKKYINNAVTD------------HDVELPMSRAYCQ-QIDSRQFAKESKDNTHQELMMLYNQMMELPDGQLKNDFLEKF-RQSYPGTPMFIPKSVKEKQRDSLPCTPQPRSK-FGGCLNRPSSSSVKKAASENFLDSIDSNKDVPRS-SIIDTPGRSEDNILAAFSNSNILNTTGTPGRIK 459
            FF +K+     + F+ L V  +T L++L   E  Q + +         ++ +LP                 P +   +   ++ +KE   +FG  +TE+ +  I QLI++L      EGLFR+ GN  RQ+ L+  LN    + L+S +  ++++D+A +LK F GELPEPLLT   +  + ++A  ++  D     +I    +++E L++LFL+LPP NR LL   L  L      Q+ +KM+AYNL ++FAP+V+  +      +D  EN+      + F+I++S+++F  P    E  + +   + T             H     ++++  + ++DS    +E++ +T + L  L+  + ++P+   K   + +F +QS   TP   P + + ++R         RS+ F G + R       K      +         P S +I +  G S++N    FS S  +  T TP R+K
Sbjct:   44 FFVEKLRHEKPEIFTELVVSNITRLIDLPGTELAQLMGE---------VDLKLP-------------GGAGPASGFFRSLMSLKRKEKGVIFGSPLTEEGIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESGE--FHSNDVATLLKMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLILPPPNRNLLKLLLDLLYQTAKKQDKNKMSAYNLALMFAPHVLWPKNVTA--NDLQENITKLNSGMAFMIKHSQKLFKAPAYIRECARLHYLGSRTQASKDDLDLIASCHTKSFQLAKSQKRNRVDSCPHQEETQHHTEEALRELFQHVHDMPESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKR--------ARSRSFSGLIKR-------KVLGNQMMSEKKKKNPTPESVAIGELKGTSKENRNLLFSGSPAV--TMTPTRLK 481

The following BLAST results are available for this feature:

BLAST of TCONS_00001483-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001483-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHG19	6.970e-35	26.40	Rho GTPase-activating protein 19 OS=Homo sapiens G...	[more]

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TCONS_00001483-protein (polypeptide) - C. hemisphaerica