|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001429 ID=TCONS_00001429|Name=TCONS_00001429|organism=Clytia hemisphaerica|type=transcript|length=3697bpRun BLAST on NCBI transcript from alignment at sc0000010:246614..284473- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001429 ID=TCONS_00001429|Name=TCONS_00001429|organism=Clytia hemisphaerica|type=transcript|length=37860bp|location=Sequence derived from alignment at sc0000010:246614..284473- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001429 vs. Swiss-Prot (Human)
Match: DMD (Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3) HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0 Identity = 401/1199 (33.44%), Postives = 656/1199 (54.71%), Query Frame = 3
Query: 180 PVDAGSLQKYRDDLKKCE---NDLTDRRDEIGRLTDDADRLLERPDLSANQLDEI--KSRSTSMQ----------------AQVQDLTTGHSKRFDVVENNLARATRFLDELDGLSSWMSKTRDLLEGHKENKPGYNVDPEIMKKSLETRKCNVLSINDLLKDFKAEGELASGNFP--QAVGEKIGQLNVDWQIIIRLALALKERPVSEEVVVAETVQERQDAPVTFDSLQTSLSFTTTETSKYKYEMYSSTN-ENSIGGEGETA--QLHDWLRLVEQKIKSLNVTLGDEDEMAAAVQKQNSIQLEMSNRRKEYDDAISMA-----TTSPQD-----DEKINKLKEHWEGVWGKVLNKKSLINQALVDWRRYNELRLQLDNYVYKADMQLNENQQIGTTVTELEAQLDKHKKFQGELSTWANTYNTLRQLAETILSTYVNEDLNDFKTTVNETNTRWNSLETRSNAHQDSLQEALDRLLQFHKNMISALTWLSSAESKVAEL-DSLVESSQAEDTSNVDELQGEMQELEDDIASHQAMFNGLNETGKQILMDLEVGEVRTALQSKLDDMNDRWNSLGVRVVDIRDRMSYGTGEWRQLLLDMQEIVDWLSRAGQELMSQQPIASDVEKVQQQNKHHQEFKGKLNARRVVIEQALEQGHNFLLKHQSAQDESFIQRGDKL-----VVRVASSLREQLTHIQSQWLDLQNNSDKWEKTISXXXXXXXXXXXDIEKINKTLNESEEIVNHWVLTQDIPVDSVASYLGDTRRMQEQTQSMETQFDSMDGTVKELRHIHGVLLAKPTEGVIDQLHDRWKHLLNDCQIRQENLQNLMSGSDAGSV---MLQESVPTPWERGQALNKVPYFINHTTKTTQWDHPKMTELYHTLSELNDVKFAAYRTSMKLRCLQKACCLDLCELNLNIKKAFEQHNLRLSNDNLVDVGEIINVLSTIFESIDTNRKESINVSQCIDMTLNWLLNVYDSGRIGKLRVLSFKAAITLMSRAKLEDKWKYLFRQISDNTGHADSKKLGLLLHDCVQIPRQLGEIAAFGGSNIEPSVRSCFEMAKNNSAIDSNNFVAWTNAEPQSLVWMPVLHRLASAETAKHDAKCGICKEYPIVGFRYRCLKCFNFDLCQTCFWSGRVSKSHRVTHPMHQYSLATTTGEDLSDFVKLMRNXXXXXXXXXXXXXXLGYLPVQTIMEGSSI 3641
P++ G Q+ ++ L++ + +L R+ + +L + +L +S + D++ K + T++Q AQ++DL K D+ E +L+ L W+S R+ LE + + D + + +++ ++ +V ++ ++G+ P Q V K+ L+ +W+ + RL L+ +++ +A + +P +L T T ET+ K EM SS E + A +L DWL L++Q IKS V +GD +++ + KQ + ++ RR + ++ I+ A TS Q+ ++I +++ W+ V + N++ +N+ L D ++ E + + + + +A +L ++ TV ++ ++ + K+ +L W + LA +L Y +D N W S+ R + + +L+E L QF ++ L WL+ AE+ L D+ + ED+ V EL + Q+L+ +I +H +++ L+E ++IL LE + LQ +LD+MN +W+ L + ++IR + + +W++L L +QE++ WL EL Q PI D VQ+QN H+ FK +L + VI LE FL + E Q +L V LR+Q + ++W L +S W++ I LE + L E ++++ L ++E I W D+ +DS+ +L + ++ + ++ ++ ++L + G+ L+ ++ L+ RWK L + R L + D G L SV PWER + NKVPY+INH T+TT WDHPKMTELY +L++LN+V+F+AYRT+MKLR LQKA CLDL L+ A +QHNL+ ND +D+ +IIN L+TI++ ++ +NV C+DM LNWLLNVYD+GR G++RVLSFK I + +A LEDK++YLF+Q++ +TG D ++LGLLLHD +QIPRQLGE+A+FGGSNIEPSVRSCF+ A N I++ F+ W EPQS+VW+PVLHR+A+AETAKH AKC ICKE PI+GFRYR LK FN+D+CQ+CF+SGRV+K H++ +PM +Y TT+GED+ DF K+++N + ++GYLPVQT++EG ++
Sbjct: 2237 PLEPGKEQQLKEKLEQVKLLVEELPLRQGILKQLNETGGPVLVSAPISPEEQDKLENKLKQTNLQWIKVSRALPEKQGEIEAQIKDLGQLEKKLEDLEE-----------QLNHLLLWLSPIRNQLEIYNQPNQEGPFDVKETEIAVQAKQPDV-------EEILSKGQHLYKEKPATQPVKRKLEDLSSEWKAVNRLLQELR----AKQPDLAPGLTTIGASPTQTVTLVTQ-PVVTKETAISKLEMPSSLMLEVPALADFNRAWTELTDWLSLLDQVIKSQRVMVGDLEDINEMIIKQKATMQDLEQRRPQLEELITAAQNLKNKTSNQEARTIITDRIERIQNQWDEVQEHLQNRRQQLNEMLKDSTQWLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLALKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQFPLDLEKFLAWLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETVRIFLTEQPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTL-GIQLSPYNLSTLEDLNTRWKLLQVAVEDRVRQLHE--AHRDFGPASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACD-ALDQHNLK-QNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN-KFRTKRYFAKHPRMGYLPVQTVLEGDNM 3406 The following BLAST results are available for this feature:
BLAST of TCONS_00001429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.