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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001413 ID=TCONS_00001413|Name=TCONS_00001413|organism=Clytia hemisphaerica|type=transcript|length=4962bpRun BLAST on NCBI transcript from alignment at sc0000010:243650..284473- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001413 ID=TCONS_00001413|Name=TCONS_00001413|organism=Clytia hemisphaerica|type=transcript|length=40824bp|location=Sequence derived from alignment at sc0000010:243650..284473- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001413 vs. Swiss-Prot (Human)
Match: DMD (Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3) HSP 1 Score: 718.768 bits (1854), Expect = 0.000e+0 Identity = 462/1304 (35.43%), Postives = 721/1304 (55.29%), Query Frame = 3
Query: 354 MQAQVQDLTTGHSKRFDVVENNLARATRFLDELDGLSSWMSKTRDLLEGHKENKPGYNVDPEIMKKSLETRKCNVLSINDLLKDFKAEGELASGNFP--QAVGEKIGQLNVDWQIIIRLALALKERPVSEEVVVAETVQERQDAPVTFDSLQTSLSFTTTETSKYKYEMYSSTN-ENSIGGEGETA--QLHDWLRLVEQKIKSLNVTLGDEDEMAAAVQKQNSIQLEMSNRRKEYDDAISMA-----TTSPQD-----DEKINKLKEHWEGVWGKVLNKKSLINQALVDWRRYNELRLQLDNYVYKADIQLNENQQIGTTVTELEAQLEKHKKFQGELSTWANTYNTLRQLAETILSTYVNEDLNDFKTTVNETNTRWNSLETRSNAHQDSLQEALDRLLQFHKNMISALTWLSSAESKVAEL-DSLVESSQAEDTSNVDELQGEMQELEDDIASHQAMFNGLNETGKQILMDLEVGEVRTALQSKLDDMNDRWNSLGVRVVDIRDRMSYGTGEWRQLLLDMQEIVDWLSRAGQELMSQQPIASDVEKVQQQNKHHQEFKGKLNARRVVIEQALEQGHNFLLKHQSAQDESFIQRGDKL-----VVRVASSLREQLTHIQSQWLDLQNNSDKWEKTISXXXXXXXXXXXDIEKINKTLNESEEIVNHWVLTQDIPVDSVASYLGDTRRMQEQTQSMETQFDSMDGTVKELRHIHGVLLAKPTEGVIDQLHDRWKHLLNDCQIRQENLQNLMSGSDAGSV---MLQESVPTPWERGQALNKVPYFINHTTKTTQWDHPKMTELYHTLSELNDVKFAAYRTSMKLRCLQKACCLDLCELNLNIKKAFEQHNLRLSNDNLVDVGEIINVLSTIFESIDTNRKESINVSQCIDMTLNWLLNVYDSGRIGKLRVLSFKAAITLMSRAKLEDKWKYLFRQISDNTGHADSKKLGLLLHDCVQIPRQLGEIAAFGGSNIEPSVRSCFEMAKNNSAIDSNNFVAWTNAEPQSLVWMPVLHRLASAETAKHDAKCGICKEYPIVGFRYRCLKCFNFDLCQTCFWSGRVSKSHRVTHPMHQYSLATTTGEDLSDFVKLMRNXXXXXXXXXXXXXXLGYLPVQTIMEGSSIXXXXXXXXXDLSNF-TFDSAMNG----HHDSTDFHPNHHG--------------NDEEIGNE----EHHLIKLMCQSLNGEITNNNTTPKSPSQILATLDSSQQEDIGEMIRGLEEEHQSLMEEYTRL------KGIKPSNS-FENGQIVPENTQDTVLIAEAKSLREHKGRLEARMQILEDHN 4103
++AQ++DL K D+ E +L+ L W+S R+ LE + + D + + +++ ++ +V ++ ++G+ P Q V K+ L+ +W+ + RL L+ +++ +A + +P +L T T ET+ K EM SS E + A +L DWL L++Q IKS V +GD +++ + KQ + ++ RR + ++ I+ A TS Q+ ++I +++ W+ V + N++ +N+ L D ++ E + + + + +A +L ++ TV ++ ++ + K+ +L W + LA +L Y +D N W S+ R + + +L+E L QF ++ L WL+ AE+ L D+ + ED+ V EL + Q+L+ +I +H +++ L+E ++IL LE + LQ +LD+MN +W+ L + ++IR + + +W++L L +QE++ WL EL Q PI D VQ+QN H+ FK +L + VI LE FL + E Q +L V LR+Q + ++W L +S W++ I LE + L E ++++ L ++E I W D+ +DS+ +L + ++ + ++ ++ ++L + G+ L+ ++ L+ RWK L + R L + D G L SV PWER + NKVPY+INH T+TT WDHPKMTELY +L++LN+V+F+AYRT+MKLR LQKA CLDL L+ A +QHNL+ ND +D+ +IIN L+TI++ ++ +NV C+DM LNWLLNVYD+GR G++RVLSFK I + +A LEDK++YLF+Q++ +TG D ++LGLLLHD +QIPRQLGE+A+FGGSNIEPSVRSCF+ A N I++ F+ W EPQS+VW+PVLHR+A+AETAKH AKC ICKE PI+GFRYR LK FN+D+CQ+CF+SGRV+K H++ +PM +Y TT+GED+ DF K+++N + ++GYLPVQT++EG ++ETP L NF DSA HD T H+ ND NE EH LI+ CQSLN + + + P+SP+QIL +L+S ++ ++ ++ LEEE+++L EY RL KG+ P S E P++ +D LIAEAK LR+HKGRLEARMQILEDHN
Sbjct: 2316 IEAQIKDLGQLEKKLEDLEE-----------QLNHLLLWLSPIRNQLEIYNQPNQEGPFDVKETEIAVQAKQPDV-------EEILSKGQHLYKEKPATQPVKRKLEDLSSEWKAVNRLLQELR----AKQPDLAPGLTTIGASPTQTVTLVTQ-PVVTKETAISKLEMPSSLMLEVPALADFNRAWTELTDWLSLLDQVIKSQRVMVGDLEDINEMIIKQKATMQDLEQRRPQLEELITAAQNLKNKTSNQEARTIITDRIERIQNQWDEVQEHLQNRRQQLNEMLKDSTQWLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLALKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQFPLDLEKFLAWLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETVRIFLTEQPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTL-GIQLSPYNLSTLEDLNTRWKLLQVAVEDRVRQLHE--AHRDFGPASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACD-ALDQHNLK-QNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN-KFRTKRYFAKHPRMGYLPVQTVLEGDNMETPVT-----LINFWPVDSAPASSPQLSHDDTHSRIEHYASRLAEMENSNGSYLNDSISPNESIDDEHLLIQHYCQSLNQD--SPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHN 3583 The following BLAST results are available for this feature:
BLAST of TCONS_00001413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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