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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001409 ID=TCONS_00001409|Name=TCONS_00001409|organism=Clytia hemisphaerica|type=transcript|length=1472bp
ATTCAGTTTTACAAAATATATCTGAATGACTCTGGTCAGCCTTCTTTGAG
GGTATCTTCAACCTGCTATAATCAAAGCAAGTTTCCACTTTAGAACTGAT
ACAGGGATATTAAAAGTTGATAAAACATGAACTTACCGATGAAATGAATA
GAATGTCCTTTGGGTGTCAAGATTTCATCgaattgtttttgaataagaat
TCTCATTCGTTCTGCCATTCGTCCATCACGAACTGATGACATGATACAAA
CGATTTTCAACGAAGTCATCTTTTATCTTTTGGTGTACAGTGTTTATTCG
AAGTTCTTTTTTACTTACACTTCTGTTTGAAATGAGCTCTGTTTAACTTC
TTTCTAAAATGAACGGNACAGTGTTTATTCGAAGTTCTTTTTGACTTACA
CTTCTGTTTGAAATGAGCTCTGTTTGACTTCTTTCTAAAATGAACGGCTT
TTTATACTTGCGTAACTATCCAAAAGGGTGATTATGATAGCAtcataaac
aaaaaacaaaatatcaatTCATAGTTACTCCCTTGTGGATACAAATATGT
ACGCTTAAGGGAGTAATAATGAACTGATATTTTGTTTGATTGCCTATTAT
TATCATCCTTTTGGAGTGATTACGACGCAAGTATAAAAGGCGTTCATTTA
AGCAAGAAAGTCAAACACAACCTGTTTCAAACAGCAAAGTGAGTCAAAAA
AAGCAACTTTGAAGCTCGAATAAACAACTCTTTACAACAAGAAGATGACT
TCGCTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACGAATGGC
AGAACGCATGAGAattcttattcaaaaacaattcGATGAAATCTTGACAC
CCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGATTTTCCA
GTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACcaga
aaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCATACATCA
TTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTA
ATGAACCACTTACCTCCTCCAAGcTTCGAATTCAAACCTAGTGGTATGGT
TGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAATGGCAGCTGCAC
GACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTCGTTGTC
ATTCCTTACGTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACAC
TCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGG
CCCAAGCTGCCAAAACTCAAAGAACTTCTGGAACACCCAATTAGATGTTA
TTTTCAAATGTATTGTTAATCTTCTTACCATGTTTGTAAATATTAGAATG
CAGTATATATTATGAAAAAGAATATAATTTTACAGTTGATAACATTGAAG
TATTGCAAATTATACCCCGCCA Run BLAST on NCBI protein sequence of TCONS_00001409-protein >TCONS_00001409-protein ID=TCONS_00001409-protein|Name=TCONS_00001409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MTSLKIVCIMSSVRDGRMAERMRILIQKQFDEILTPKGHSIHFIDPEEYD
FPVLKTPLHFYPDQSEAPEKLRKLNDIVIAADAYIILTAEYNRSMPPALT
NLMNHLPPPSFEFKPSGMVGYSQGNLGGAMAMAAARPFLSEMGCLPVKHF
VVIPYVQNEVKEDGSTDNTHIHSSLKKLFTQVEWWAQAAKTQRTSGTPN Run BLAST on NCBI transcript from alignment at sc0000010:37213..40332- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001409 ID=TCONS_00001409|Name=TCONS_00001409|organism=Clytia hemisphaerica|type=transcript|length=3120bp|location=Sequence derived from alignment at sc0000010:37213..40332- (Clytia hemisphaerica)
ATTCAGTTTTACAAAATATATCTGAATGACTCTGGTCAGCCTTCTTTGAG
GGTATCTTCAACCTGCTATAATCAAAGCAAGTTTCCACTTTAGAACTGAT
ACAGGGATATTAAAAGTTGATAAAACATGAACTTACCGATGAAATGAATA
GAATGTCCTTTGGGTGTCAAGATTTCATCGAATTGTTTTTGAATAAGAAT
TCTCATTCGTTCTGCCATTCGTCCATCACGAACTGATGACATGATACAAA
CGATTTTCAACGAAGTCATCTTTTATCTTTTGGTGTACAGTGTTTATTCG
AAGTTCTTTTTTACTTACACTTCTGTTTGAAATGAGCTCTGTTTAACTTC
TTTCTAAAATGAACGGNACAGTGTTTATTCGAAGTTCTTTTTGACTTACA
CTTCTGTTTGAAATGAGCTCTGTTTGACTTCTTTCTAAAATGAACGGCTT
TTTATACTTGCGTAACTATCCAAAAGGGTGATTATGATAGCATCATAAAC
AAAAAACAAAATATCAATTCATAGTTACTCCCTTGTGGATACAAATATGT
ACGCTTAAGGGAGTAATAATGAACTGATATTTTGTTTGATTGCCTATTAT
TATCATCCTTTTGGAGTGATTACGACGCAAGTATAAAAGGCGTTCATTTA
AGCAAGAAAGTCAAACACAACCTGTTTCAAACAGCAAAGTGAGTCAAAAA
AAGCAACTTTGAAGCTCGAATAAACAACTCTTTACAACAAGAAGATGACT
TCGCTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACGAATGGC
AGAACGCATGAGAATTCTTATTCAAAAACAATTCGATGAAATCTTGACAC
CCAAAGGACATTCTATTCATTTCATCGGTAAGTTTTCTTTTTAGCTTTAT
CTACTTTCAATCCTTGTATCAGTTCGCAAGTAGAAACTAGCCTTTGATTA
ACGCATAAAAATGAAAAAACATCCTAAATGTTTTAACGTTCACCATTTTA
TGATTCCTTCAACTTTCTGAACAGACATGGTGTTTTAAGAGTCCGCAAAG
CCTTAAAAAATTCTTTATTTTTTCTTAGCATATCTTGACAATCAAAACGT
TATTCTTTATATATTCTGTTCTTATAAAAAGGTGTATCATACAAGAAGGC
AAAGAAGACTGCCCTGAGAGAATCCAGATTATTTTATGAAATTGAATTAT
TCTTTTTTCGACAGATGCTAACTGTTGGACACAGAAACTGCTCAGATGAT
ATAGATTTCAGATTTTGAACAAGATTTCTTTTCCTTTCTTAGATCCTGAG
GAATACGATTTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCA
ATCAGAAGCACCAGAAAAATTACGAAAATTGAACGACATTGTCATCGCGG
CCGATGCATACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCT
GCTTTAACCAACTTAATGAACCACTTACCTCCTCCAAGGCAAGTTAACGT
TTGTTTTGTGCTTTAAAACTTGAAGGGACACACCAACCCATTGGAGGTTT
CCAAAATTGAAAAATAGCAATTAAACGTCCTTTTCGAAAGAAAATTAACC
GCAACCCTGAATTTCAGTCTCGTTGTAAATATCCTCTTTATCAAAAAACA
CTTAAAATTCTGAATCCTCACTGGCTTAAACTGTAAAAAGTGAATCATGG
CATAAAACAAAGTGTACAATATGTGTTAAAAAGGGGAATTTTTGCCAAAT
CTTAAACACAACAAATGATTTTCAAGTGCTCGAATGTTTGGGTCAAGCTG
GAGTTTTTACAAGTTCTTTGATGACTCTGTTGGTCTTAAATGTTGAGACA
AACGATTTTATTACTTTTTCTAAAGGATTTTGCTCTGAATTTTAACATGA
GACTTACGACATAAAGGATATCAAGATCTCGGGATTCAAAAGGTCAATAT
TATTCTAGTACTGTAAGGCTGGGATATATAACCTAGCAACCACTAAGTCC
CTCCAAAATCGAAATATCCAATGAAATAAAAAGAAAGTGCTGAAACACCG
ATTTCTGGCCCGAGCTTTGAATATTGAAAAACAGTGGTAAAACAACCTAA
ACAAATTGTTGAACTTTATTGAAGGATATTTCAGCTTATTCACCTTTAAT
TTCATATCCTCACCAGTTGAAAAAAGTTCTCACCGGGCGACTAGAACTAG
GGTATTTACATAAATGTTATTTCATTTTTCACCTTTTTTAGCTTCGAATT
CAAACCTAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTA
TGGCAATGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCA
GTCAAACATTTCGTTGTCATTCCTTACGTAAGTTAAAATTGAAATAATCT
TGCATTGCGTGATCACAATTCCCCTCAAACACGATCTCAGAATTTCATCT
AATAATATTTTATCATCCAGTTTTTTAAGAATTCTTTTCATAAGAAGGTT
CTTATTTGCAAAATTTCAAGATTTCATCCTGTTAACCAGAGGATAAAGAG
TATGTTCACACGTTACGGTTTCGTTCCGAAACGGCGAACGTCAAAATTCG
AAACGTTAAATTTAAAAAAGACGTCAACAAAGCAAAACAGATCAAAACGG
TTTCGCTCCACTTTTTTCATCGGAACGAAGCTGTTTCGTTTTCTTGATCC
GAAACGAACGTTCCAAAACCAATATGAACACTCTCGATCCGTAACGAAAA
TCATACCGGAGTAAAACGGAACAGTAACGTGTGAACATGGTCTAAAGAGT
CTTCATAACTCTAACTTCTTTAAAAAGTGCTCCACTAAACGTTTCCTTAC
TCTTCAGGTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTC
ATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCC
CAAGCTGCCAAAACTCAAAGAACTTCTGGAACACCCAATTAGATGTTATT
TTCAAATGTATTGTTAATCTTCTTACCATGTTTGTAAATATTAGAATGCA
GTATATATTATGAAAAAGAATATAATTTTACAGTTGATAACATTGAAGTA
TTGCAAATTATACCCCGCCA Coding sequence (CDS) from alignment at sc0000010:37213..40332- >TCONS_00001409 ID=TCONS_00001409|Name=TCONS_00001409|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000010:37213..40332- (Clytia hemisphaerica)
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001409-exon-sc0000010-1575043694:39456..40332 | TCONS_00001409-exon-sc0000010-1575043694:39456..40332 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1575043694:38845..39040 | TCONS_00001409-exon-sc0000010-1575043694:38845..39040 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1575043694:37956..38091 | TCONS_00001409-exon-sc0000010-1575043694:37956..38091 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1575043694:37213..37475 | TCONS_00001409-exon-sc0000010-1575043694:37213..37475 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1510915933:39456..40332 | TCONS_00001409-exon-sc0000010-1510915933:39456..40332 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1510915933:38845..39040 | TCONS_00001409-exon-sc0000010-1510915933:38845..39040 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1510915933:37956..38091 | TCONS_00001409-exon-sc0000010-1510915933:37956..38091 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1510915933:37213..37475 | TCONS_00001409-exon-sc0000010-1510915933:37213..37475 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1491911889:39456..40332 | TCONS_00001409-exon-sc0000010-1491911889:39456..40332 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1491911889:38845..39040 | TCONS_00001409-exon-sc0000010-1491911889:38845..39040 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1491911889:37956..38091 | TCONS_00001409-exon-sc0000010-1491911889:37956..38091 | Clytia hemisphaerica | exon |
| TCONS_00001409-exon-sc0000010-1491911889:37213..37475 | TCONS_00001409-exon-sc0000010-1491911889:37213..37475 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:37213..40332 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029039 | Flavoprotein-like_dom |
| IPR005025 | FMN_Rdtase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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