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TCONS_00001409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001409
Unique NameTCONS_00001409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001409 ID=TCONS_00001409|Name=TCONS_00001409|organism=Clytia hemisphaerica|type=transcript|length=1472bp
ATTCAGTTTTACAAAATATATCTGAATGACTCTGGTCAGCCTTCTTTGAG
GGTATCTTCAACCTGCTATAATCAAAGCAAGTTTCCACTTTAGAACTGAT
ACAGGGATATTAAAAGTTGATAAAACATGAACTTACCGATGAAATGAATA
GAATGTCCTTTGGGTGTCAAGATTTCATCgaattgtttttgaataagaat
TCTCATTCGTTCTGCCATTCGTCCATCACGAACTGATGACATGATACAAA
CGATTTTCAACGAAGTCATCTTTTATCTTTTGGTGTACAGTGTTTATTCG
AAGTTCTTTTTTACTTACACTTCTGTTTGAAATGAGCTCTGTTTAACTTC
TTTCTAAAATGAACGGNACAGTGTTTATTCGAAGTTCTTTTTGACTTACA
CTTCTGTTTGAAATGAGCTCTGTTTGACTTCTTTCTAAAATGAACGGCTT
TTTATACTTGCGTAACTATCCAAAAGGGTGATTATGATAGCAtcataaac
aaaaaacaaaatatcaatTCATAGTTACTCCCTTGTGGATACAAATATGT
ACGCTTAAGGGAGTAATAATGAACTGATATTTTGTTTGATTGCCTATTAT
TATCATCCTTTTGGAGTGATTACGACGCAAGTATAAAAGGCGTTCATTTA
AGCAAGAAAGTCAAACACAACCTGTTTCAAACAGCAAAGTGAGTCAAAAA
AAGCAACTTTGAAGCTCGAATAAACAACTCTTTACAACAAGAAGATGACT
TCGCTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACGAATGGC
AGAACGCATGAGAattcttattcaaaaacaattcGATGAAATCTTGACAC
CCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGATTTTCCA
GTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACcaga
aaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCATACATCA
TTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTA
ATGAACCACTTACCTCCTCCAAGcTTCGAATTCAAACCTAGTGGTATGGT
TGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAATGGCAGCTGCAC
GACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTCGTTGTC
ATTCCTTACGTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACAC
TCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGG
CCCAAGCTGCCAAAACTCAAAGAACTTCTGGAACACCCAATTAGATGTTA
TTTTCAAATGTATTGTTAATCTTCTTACCATGTTTGTAAATATTAGAATG
CAGTATATATTATGAAAAAGAATATAATTTTACAGTTGATAACATTGAAG
TATTGCAAATTATACCCCGCCA
Run BLAST on NCBI

protein sequence of TCONS_00001409-protein

>TCONS_00001409-protein ID=TCONS_00001409-protein|Name=TCONS_00001409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MTSLKIVCIMSSVRDGRMAERMRILIQKQFDEILTPKGHSIHFIDPEEYD
FPVLKTPLHFYPDQSEAPEKLRKLNDIVIAADAYIILTAEYNRSMPPALT
NLMNHLPPPSFEFKPSGMVGYSQGNLGGAMAMAAARPFLSEMGCLPVKHF
VVIPYVQNEVKEDGSTDNTHIHSSLKKLFTQVEWWAQAAKTQRTSGTPN
Run BLAST on NCBI

transcript from alignment at sc0000010:37213..40332-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001409 ID=TCONS_00001409|Name=TCONS_00001409|organism=Clytia hemisphaerica|type=transcript|length=3120bp|location=Sequence derived from alignment at sc0000010:37213..40332- (Clytia hemisphaerica)
ATTCAGTTTTACAAAATATATCTGAATGACTCTGGTCAGCCTTCTTTGAG GGTATCTTCAACCTGCTATAATCAAAGCAAGTTTCCACTTTAGAACTGAT ACAGGGATATTAAAAGTTGATAAAACATGAACTTACCGATGAAATGAATA GAATGTCCTTTGGGTGTCAAGATTTCATCGAATTGTTTTTGAATAAGAAT TCTCATTCGTTCTGCCATTCGTCCATCACGAACTGATGACATGATACAAA CGATTTTCAACGAAGTCATCTTTTATCTTTTGGTGTACAGTGTTTATTCG AAGTTCTTTTTTACTTACACTTCTGTTTGAAATGAGCTCTGTTTAACTTC TTTCTAAAATGAACGGNACAGTGTTTATTCGAAGTTCTTTTTGACTTACA CTTCTGTTTGAAATGAGCTCTGTTTGACTTCTTTCTAAAATGAACGGCTT TTTATACTTGCGTAACTATCCAAAAGGGTGATTATGATAGCATCATAAAC AAAAAACAAAATATCAATTCATAGTTACTCCCTTGTGGATACAAATATGT ACGCTTAAGGGAGTAATAATGAACTGATATTTTGTTTGATTGCCTATTAT TATCATCCTTTTGGAGTGATTACGACGCAAGTATAAAAGGCGTTCATTTA AGCAAGAAAGTCAAACACAACCTGTTTCAAACAGCAAAGTGAGTCAAAAA AAGCAACTTTGAAGCTCGAATAAACAACTCTTTACAACAAGAAGATGACT TCGCTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACGAATGGC AGAACGCATGAGAATTCTTATTCAAAAACAATTCGATGAAATCTTGACAC CCAAAGGACATTCTATTCATTTCATCGGTAAGTTTTCTTTTTAGCTTTAT CTACTTTCAATCCTTGTATCAGTTCGCAAGTAGAAACTAGCCTTTGATTA ACGCATAAAAATGAAAAAACATCCTAAATGTTTTAACGTTCACCATTTTA TGATTCCTTCAACTTTCTGAACAGACATGGTGTTTTAAGAGTCCGCAAAG CCTTAAAAAATTCTTTATTTTTTCTTAGCATATCTTGACAATCAAAACGT TATTCTTTATATATTCTGTTCTTATAAAAAGGTGTATCATACAAGAAGGC AAAGAAGACTGCCCTGAGAGAATCCAGATTATTTTATGAAATTGAATTAT TCTTTTTTCGACAGATGCTAACTGTTGGACACAGAAACTGCTCAGATGAT ATAGATTTCAGATTTTGAACAAGATTTCTTTTCCTTTCTTAGATCCTGAG GAATACGATTTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCA ATCAGAAGCACCAGAAAAATTACGAAAATTGAACGACATTGTCATCGCGG CCGATGCATACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCT GCTTTAACCAACTTAATGAACCACTTACCTCCTCCAAGGCAAGTTAACGT TTGTTTTGTGCTTTAAAACTTGAAGGGACACACCAACCCATTGGAGGTTT CCAAAATTGAAAAATAGCAATTAAACGTCCTTTTCGAAAGAAAATTAACC GCAACCCTGAATTTCAGTCTCGTTGTAAATATCCTCTTTATCAAAAAACA CTTAAAATTCTGAATCCTCACTGGCTTAAACTGTAAAAAGTGAATCATGG CATAAAACAAAGTGTACAATATGTGTTAAAAAGGGGAATTTTTGCCAAAT CTTAAACACAACAAATGATTTTCAAGTGCTCGAATGTTTGGGTCAAGCTG GAGTTTTTACAAGTTCTTTGATGACTCTGTTGGTCTTAAATGTTGAGACA AACGATTTTATTACTTTTTCTAAAGGATTTTGCTCTGAATTTTAACATGA GACTTACGACATAAAGGATATCAAGATCTCGGGATTCAAAAGGTCAATAT TATTCTAGTACTGTAAGGCTGGGATATATAACCTAGCAACCACTAAGTCC CTCCAAAATCGAAATATCCAATGAAATAAAAAGAAAGTGCTGAAACACCG ATTTCTGGCCCGAGCTTTGAATATTGAAAAACAGTGGTAAAACAACCTAA ACAAATTGTTGAACTTTATTGAAGGATATTTCAGCTTATTCACCTTTAAT TTCATATCCTCACCAGTTGAAAAAAGTTCTCACCGGGCGACTAGAACTAG GGTATTTACATAAATGTTATTTCATTTTTCACCTTTTTTAGCTTCGAATT CAAACCTAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTA TGGCAATGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCA GTCAAACATTTCGTTGTCATTCCTTACGTAAGTTAAAATTGAAATAATCT TGCATTGCGTGATCACAATTCCCCTCAAACACGATCTCAGAATTTCATCT AATAATATTTTATCATCCAGTTTTTTAAGAATTCTTTTCATAAGAAGGTT CTTATTTGCAAAATTTCAAGATTTCATCCTGTTAACCAGAGGATAAAGAG TATGTTCACACGTTACGGTTTCGTTCCGAAACGGCGAACGTCAAAATTCG AAACGTTAAATTTAAAAAAGACGTCAACAAAGCAAAACAGATCAAAACGG TTTCGCTCCACTTTTTTCATCGGAACGAAGCTGTTTCGTTTTCTTGATCC GAAACGAACGTTCCAAAACCAATATGAACACTCTCGATCCGTAACGAAAA TCATACCGGAGTAAAACGGAACAGTAACGTGTGAACATGGTCTAAAGAGT CTTCATAACTCTAACTTCTTTAAAAAGTGCTCCACTAAACGTTTCCTTAC TCTTCAGGTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTC ATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCC CAAGCTGCCAAAACTCAAAGAACTTCTGGAACACCCAATTAGATGTTATT TTCAAATGTATTGTTAATCTTCTTACCATGTTTGTAAATATTAGAATGCA GTATATATTATGAAAAAGAATATAATTTTACAGTTGATAACATTGAAGTA TTGCAAATTATACCCCGCCA

Coding sequence (CDS) from alignment at sc0000010:37213..40332-

>TCONS_00001409 ID=TCONS_00001409|Name=TCONS_00001409|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000010:37213..40332- (Clytia hemisphaerica)
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
GTTCAAAATGAAGTGAAAGAAGATGGCAGCACAGACAACACTCATATTCA
CAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTG
CCAAAACTCAAAGAACTTCTGGAACACCCAATTAGCTTCGAATTCAAACC
TAGTGGTATGGTTGGTTATTCGCAAGGGAACCTTGGAGGTGCTATGGCAA
TGGCAGCTGCACGACCATTCTTATCAGAAATGGGATGTTTGCCAGTCAAA
CATTTCGTTGTCATTCCTTACATCCTGAGGAATACGATTTTCCAGTCTTG
AAGACACCTCTTCATTTCTACCCTGATCAATCAGAAGCACCAGAAAAATT
ACGAAAATTGAACGACATTGTCATCGCGGCCGATGCATACATCATTCTCA
CTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAAC
CACTTACCTCCTCCAAGATGACTTCGCTGAAAATCGTTTGTATCATGTCA
TCAGTTCGTGATGGACGAATGGCAGAACGCATGAGAATTCTTATTCAAAA
ACAATTCGATGAAATCTTGACACCCAAAGGACATTCTATTCATTTCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000746XLOC_000746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001409-exon-sc0000010-1575043694:39456..40332TCONS_00001409-exon-sc0000010-1575043694:39456..40332Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1575043694:38845..39040TCONS_00001409-exon-sc0000010-1575043694:38845..39040Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1575043694:37956..38091TCONS_00001409-exon-sc0000010-1575043694:37956..38091Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1575043694:37213..37475TCONS_00001409-exon-sc0000010-1575043694:37213..37475Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1510915933:39456..40332TCONS_00001409-exon-sc0000010-1510915933:39456..40332Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1510915933:38845..39040TCONS_00001409-exon-sc0000010-1510915933:38845..39040Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1510915933:37956..38091TCONS_00001409-exon-sc0000010-1510915933:37956..38091Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1510915933:37213..37475TCONS_00001409-exon-sc0000010-1510915933:37213..37475Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1491911889:39456..40332TCONS_00001409-exon-sc0000010-1491911889:39456..40332Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1491911889:38845..39040TCONS_00001409-exon-sc0000010-1491911889:38845..39040Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1491911889:37956..38091TCONS_00001409-exon-sc0000010-1491911889:37956..38091Clytia hemisphaericaexon
TCONS_00001409-exon-sc0000010-1491911889:37213..37475TCONS_00001409-exon-sc0000010-1491911889:37213..37475Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001409-proteinTCONS_00001409-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:37213..40332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1511.32 1539.75 1517.13 1513.21 5.48152 4.46246 0.666462 1.01111 0.354043 1.32133 0 0 0 0 0 0 0 0.0216136 0 0.0312467 1.44667 1.21082 473.501 390.292 0.0301591 0.14801 23.3937 26.5734 211.148 228.046
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029039Flavoprotein-like_dom
IPR005025FMN_Rdtase-like
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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