TCONS_00001408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001408
Unique NameTCONS_00001408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001408 ID=TCONS_00001408|Name=TCONS_00001408|organism=Clytia hemisphaerica|type=transcript|length=1459bp
taatcATCATGAAAATATGTCGTTTTGAGAGAGAAGATGAATGTTGAACG
TTAAAGAGCATCAGCTAAACTGACCACAATTGAAGTTGGAaaaaatactg
caggaaaaacTCTTCTTGAAATAACAATGAATAGAAttcttttcttcttg
ttttttNCACTGACCACGACTTAAACAAGCTCGAGAATGGAGTAtaacaa
aatttatttcatcCTTTTGGTGGTTTCAGCTACTATAAAAGATTCTCTAT
TAATCAAATGTTATGACTGTTCTGGAACTCACGCGTATTGTAACAACACA
AGAAAAACAAAGACTTGTGATGGACCACAGTATTCCTGTCTCCTACGATC
TGGAAGCACCAAGATTCGAGTTTTAAAGAACGGTGCTTtagattttgaag
tttttagcACTGTAACAAAAACTTGTGCCGTGGAGAGCAGTTCATATTGT
GTGACTCAAAAAGAAATCGACCCTAAAATGCTGACCTGCTGTGTGGTGTT
ACGAAGATGGATGTAATTTCAACATGAAACAAGCTAACAGAGCTGGCCAA
ACGAGTCAAGCAAATGAAATTGACCCATATGGGTGGTATAAGACCTGGAC
TTCTTCAGCGACAAATGCAACTGGCTTAAAACTTGATTTAACATTTTATC
TGTGTTTGATTTCTGGgttattgatttttcttgagtGAAATGAAAACGAC
ATGGATATCCCAGCCAAAATTTCGAGTCTAGATACCAGACGACGAATGAT
CATTTTGGAGCATCTTGTCAAAGTTGGTTCCAAAAAAATTGGCAGTCTGC
ACATTTTGATACATTTCTGCTTGAagggaaaaaaatataaagtaatacct
cgttggaaagatattcttaACCGGACTATTTTAAGtcttcaaaatctttt
aaaaatttagaaaatggaaatgaaaaatgaagatgaaaaaattaaagatt
ttttctactggCACAAGAATTTTTCCGAAACttgaactttttcattttcg
aaattttgaaagccttaaaaccaTCCACTTACGAATATCTTatcaacgag
gtattacttgtAGTTATATCTTTTCTCCTTCTGCAGAAATGTATCAAAAT
GTGTAGACTGcaaatttttttggaacagacttaaaacagaagcagccacc
gacctaaaatttgcaaatatctgctctgatttgccagctggaaaaatttc
cccgaaattaagaacagttcctcgttttccaggggagaaatttttacttc
agaacagttatatttttccagctaggaggtaagAAAACTTTCGGAACagg
tacgaaattaccaggcgattgattttacgcgagttaactattcttatcta
ccagggctgacgaaatcttataagaacagatcgctaaattccagctcgac
attgaaggacttttaagaacagaaaattaatttccagctaacagtttaaC
TTTAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0000010:1144704..1148270+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001408 ID=TCONS_00001408|Name=TCONS_00001408|organism=Clytia hemisphaerica|type=transcript|length=3567bp|location=Sequence derived from alignment at sc0000010:1144704..1148270+ (Clytia hemisphaerica)
taatcATCATGAAAATATGTCGTTTTGAGAGAGAAGATGAATGTTGAACG TTAAAGAGCATCAGCTAAACTGACCACAATTGAAGTTGGAaaaaatactg caggaaaaacTCTTCTTGAAATAACAATGAATAGAAttcttttcttcttg ttttttNCACTGACCACGACTTAAACAAGCTCGAGAATGGAGTAtaacaa aatttatttcatcCTTTTGGTGGTTTCAGCTACTATAAAAGGTTTGTGAA TACTTTCAAACGCAGTAGTTACGTTTTGAATAGGATAAGAAATTAGATTT GTTTATCCTCTAGGGAAAACGTTTTTATCCCGGAGGGGGAGGGCGAGATg atgggtatgtccgagccaaagttaCTGGTGATGGAGTTTTGGACCCTTAC AGCGACTCAATTTGCtctttaatggtttttgtacccctttttgagcgtgt gaaaaagggacccttatggctcatATTTgaggatttgaaatttttttata tttagtaTTATGGTTAATTCTGTATTCATGAAATATAGCCTCACCATTTC GGTTCCTATAGGTATCTTAACATTGTGTAAAAATTGGTTCAGTGGACTAA GAGAGCTCTTATAATTTCATATGTCAGCATAGTCTAGTCTTTTCAAAAAG AGCTGAAAATACAGTGCTTTTAGCGACCAAAGtggtgaaaattaaaattt ttcccctatcggcgcaaaccatggttgcgcctccttaatCTCTGATAACA CTTTAAATGCAACTCAAATTACTATTACGATATCGAGATATTGTATATgc aaagaaaaacttcaattttaaaattcaatatGATTCAGGCAGAATCATTC CGAAAAAGAGCCATGCTTGAAGGAAATCAGTGgtccaaaatcaattttct cctgtcggcgcaaaccatggttgcgcctccttcgTCACTAAATTATTTTC CCCTGCACGTTTGAAATCAAGCTACTTGTTGCCTTTTATATAATAATGTA GTCCTCCCCACATGAGTGCACAACATTTTGATATTGAGGCTTATAGGATC ACTCACAATATAGAAAGTTACTGTAGTTAAACCCGATTTCTATATGTGAC AAGTCACCATTCAAGTATAAGTAAGTATAACCCTCACCTTAATCAATCAA TTAGAGtgtagggaaaaaattttagcaaggggggggggggNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCACTCCCT GAGATCCTAAGAACTGGCTCTCTTATAAAAGTGAATTCctcttttttttc aacatttgaagtttttcgaattttttatttcGGGATGAAAATTTTCTAGC AGGCTTCAAACTATACACATCTACATTTTAGATTCTCTATTAATCAAATG TTATGACTGTTCTGGAACTCACGCGTATTGTAACAACACAAGAAAAACAA AGACTTGTGATGGACCACAGTATTCCTGTCTCCTACGATCTGGAAGCACC AAGATTCGAGTTTTAAAGAACGGTGCTTtagattttgaagtttttagcAC TGTAACAAAAACTTGTGCCGTGGAGAGCAGTTCATATTGTGTGACTCAAA AAGAAATCGACCCTAAAATGCTGACCTGTAAGGTATTGCAACAGCTAATT TAGACTCGCAGCCAAGCTGCTCACGTCATTGTGAATTAACACCCCTGTGT TACAGACCACTTTAAACTTTGAGCGATCAAAATTTGTCCCTAGTAGGAAA AATATCCTataatttcagcaaaaaattgaccttgccccattcgaaattca atgtaaaaaaattgcacttcaaaaccatcccaactggatttttttgattg cttggaacgatagaatttctatccccattgggctTTCGATAGAAATATTT ATTTCCGTTTCCGCTGTGTAAGAAGAATTTCATCGAGCCTGTGAGACAGG AGGTGTAAATTAACTTACGCCTTAAAATCTGAGACTGCTCAAATATCATC ACGCCTCGTTGACAAAGGGGGTGttagatttttcattttcactcaTTACA TCATGCATAGCCCTATCGATAATGGCCCGTACTAATAGTTGTTGACCCTA TGCTGCATCATACATATTGTATGATGGCACTGATTTCAAAAGCGTGAACC GAAAGAGTATCGATGTCAGGGTTTCTTTTTACACTTATGTTATAGGCTGT GTGGTGTTACGAAGATGGATGTAATTTCAACATGAAACAAGCTAACAGAG CTGGCCAAACGAGTCAAGCAAATGAAATTGACCCATATGGGTGGTATAAG ACCTGGACTTCTTCAGCGACAAATGCAACTGGCTTAAAACTTGATTTAAC ATTTTATCTGTGTTTGATTTCTGGgttattgatttttcttgagtGAAATG AAAACGACATGGATATCCCAGCCAAAATTTCGAGTCTAGATACCAGACGA CGAATGATCATTTTGGAGCATCTTGTCAAAGTTGGTTCCAAAAAAATTGG CAGTCTGCACATTTTGATACATTTCTGCTTGAagggaaaaaaatataaag taatacctcgttggaaagatattcttaACCGGACTATTTTAAGtcttcaa aatcttttaaaaatttagaaaatggaaatgaaaaatgaagatgaaaaaat taaagattttttctactggCACAAGAATTTTTCCGAAACttgaacttttt cattttcgaaattttgaaagccttaaaaccaTCCACTTACGAATATCTTa tcaacgaggtattacttgtAGTTATATCTTTTCTCCTTCTGCAGAAATGT ATCAAAATGTGTAGACTGcaaatttttttggaacagacttaaaacagaag cagccaccgacctaaaatttgcaaatatctgctctgatttgccagctgga aaaatttccccgaaattaagaacagttcctcgttttccaggggagaaatt tttacttcagaacagttatatttttccagctaggaggtaagAAAACTTTC GGAACaggtacgaaattaccaggcgattgattttacgcgagttaactatt cttatctaccagggctgacgaaatcttataagaacagatcgctaaattcc agctcgacattgaaggacttttaagaacagaaaattaatttccagctaac agtttaaCTTTAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000745XLOC_000745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001408-exon-sc0000010-1491911889:1144704..1144944TCONS_00001408-exon-sc0000010-1491911889:1144704..1144944Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1510915933:1144704..1144944TCONS_00001408-exon-sc0000010-1510915933:1144704..1144944Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1575043694:1144704..1144944TCONS_00001408-exon-sc0000010-1575043694:1144704..1144944Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1491911889:1146485..1146730TCONS_00001408-exon-sc0000010-1491911889:1146485..1146730Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1510915933:1146485..1146730TCONS_00001408-exon-sc0000010-1510915933:1146485..1146730Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1575043694:1146485..1146730TCONS_00001408-exon-sc0000010-1575043694:1146485..1146730Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1491911889:1147299..1148270TCONS_00001408-exon-sc0000010-1491911889:1147299..1148270Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1510915933:1147299..1148270TCONS_00001408-exon-sc0000010-1510915933:1147299..1148270Clytia hemisphaericaexon
TCONS_00001408-exon-sc0000010-1575043694:1147299..1148270TCONS_00001408-exon-sc0000010-1575043694:1147299..1148270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1144704..1148270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12076e-09 0 0 0 0.712872 1.42128 0 1.34183 0 0 0 0 0 0 0.299172 0.0219132 0 0 0 0 0.526601 0 0 0 0.104515 0 0.762842 0.607267 0.57435 9.49051e-08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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