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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=transcript|length=760bp tggatctccaggctaaatAAAAGTTTACAAACTTGTGGATCACCCAATGT TGAACAAGTGTAACATTTTACAGCATCCGCTTAAACGTGGCGAGATCTAC ATGAAATATGGACAAAAttcaagaatatttcaaaatactttTCTGGCTGA CATTTATCACAGATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACT CACACGTATTGCAacaattcaagaaaaacaacGACGTGCGATGGGCCACA GTATTCCTGCTTGTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGA ACGGTGCATtaggaaatgaaattttgacaagCGTCACCAAATCGTGCGGT GTGGAAACACAGTCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAA CATGCTTCTATGCCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCG ATTTGAAGGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGAC CCTTATGGTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACAC TGTTATTCTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTT GAATTAACTGGAATGGTTTTGACCTTGACTATTCCTCGAAATAATGTCCG TTGATCAATATTCGTTTATTATCCAGAGGCAACCGAGAGATTAGTTTTGG AGACATTActaattttattgctttttaattgttattAAACTTTTGCTCGA TAATTTTGTA Run BLAST on NCBI protein sequence of TCONS_00001406-protein >TCONS_00001406-protein ID=TCONS_00001406-protein|Name=TCONS_00001406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MDKIQEYFKILFWLTFITDSLSIECYECSGTHTYCNNSRKTTTCDGPQYS CLLSSSTTRVQVIKNGALGNEILTSVTKSCGVETQSSYCKDKQDMDPNML LCQTNWCYKDFCNFDLKDIKKGAKIQTNQVDPYGWHKTSGAAPIKKYTVI LVWSLLVVLLLIYF Run BLAST on NCBI transcript from alignment at sc0000010:1132911..1139473+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=transcript|length=6563bp|location=Sequence derived from alignment at sc0000010:1132911..1139473+ (Clytia hemisphaerica) tggatctccaggctaaatAAAAGGTAATTTTCTACTCATATCACTACTTT
TGATGcgataggccttttcataaactaCGTCACGAACAACGCTTACATCA
TctctaaaatattgctatggtgaTTGATTCCCAGAGGACATGTTAATAAA
GGCCCGATTTTGGGCCAGTAAAGTTCTTACCCGGCAGGTATTAGGAATAa
cgtttttgacatttttacaatGTGAATCACAAACATCCAGTGTTGGATTT
GAACACTTCTTCACAAATCGAGGCCGTTGGCCTCCATTATGGCTTTCTTT
GTATGAAATTGTCAAGCATCTTGATCCAGAGACACATTCCCTCTGATTAT
CTTCCATTTCTTGCCATAGTTTACAAACTTGTGGATCACCCAATGTTGAA
CAAGTGTAACATTTTACAGCATCCGCTTAAACGTAAGAAGGTATTATATT
ATTACCGATAGATAGATTGAGTAAGCGACACTGCTTCTACTTATAACGTT
TTGACTTTAAAGATGCTGGTTGTCGATTCAAAGTATATAAACGCTAAAAC
TCGAAAGCTGCTGACACGAAAAAATTTTGCAGGACGCGATGCCATGTTGa
ttaattaaaaactccagcatagCAACAATAGCACAAAGGCATAATTAGTA
AACTCGTGTACTAAATATTTCTCATCATGGTTTTGATACTGGAGTCAGTA
GAATTTCTAAACATGACGTTGCAAGAATGATTTGTATGGAAACCTTTAAC
AACATTCTTGAATCATGAATGATAATCCAAGTATATTTTCCTAAACTTCA
CTTATCTTTATCTACTAAGCCACTTAGTGTTTACTTAGTTAcaaagaaaa
aagggaaattcccacgaaatcttacaaccacaaacgatttggaagtgctt
tAAATCAGGTTGAACGGGtctagagttttaactctgagttttaacgctag
acttaagaccttagggtctgaggaactaaaagtccaagaatggtccaata
gggctcagaatatagccttcccgaattgaaatattccaataaatttatca
atttgcccaaaagctttgcccgaactttaaattgctgaaaacgaggaatt
aaccaaaattcccaatatatttcgacccTGATTGTAATTTTATTAATCAG
TAAATCACCTATATTTCTAAGGCCCCTCCACAGCAGTTTGTGtggttgcg
tgaatgggcttttttttACGTGAATGcgtagaaattttgaaaaagctcCA
CGAATGCGTGATTtgaaatgcttttaaagaacagAAGGTGCgagaatttt
gaaaagaaattgcgtgaattttgaaaaaaaagatgcGTCATTGCGTGAAT
TTTTATTACTCACCTTTCTTAAGGACTccgaaaataaaaattgctgCAAC
AAACTTCCCAGTCATTCCTATTTGATTTTGCAAACGTGATGATAACTTAA
GTGactgaaactttctttttctttgactaTGTGGATGTTCTTTTCGTTAA
AAACTACTCGAcatatttttcatcttcttaaTTTCTTatatcttcaaaaa
tatttaacttatttcaattcaaaaattcttttgtaaAGGATTAGTCAATA
ATTTATTATCAAGTTTACAGGGATTCTAAAACAAATTGATGGTTGAAAAT
ATTCCCCCGTTTTCTCCTTAATATGAGTAATcagaaaacgtttttttata
gaaactggctttcagaaaatcaactgAGCTTGAAAACTCTGAGTGGAGAG
ATGGCGCATGGCACGTATTTacttagcctgggaatccaagcgttaaactt
ttttcacagtctagtttatgatatttttgctgctggtttaacgcttggtg
caggtaactcgcctgcagggacatttttccctgcaatgcaggttcgacCT
GATTGGCCAGCctttggcgtattacttagcagtactttcgcgcgcatttt
gataatttcaatgcgcgcgcataatttatggaaaaagctgactctgcaga
aaaaaggaaaacaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagactaatctacctgc
accaagctctataattttagaactttgtgaggtgaggtatttttagtttt
ttctaagattatgagcttggattcccaggctagtatTTACTCAAAAGGTC
ATAACACCGTAAGAGAACCTGCCCAGGTTTGCGAAACGCTTTGTGATATT
TTTCATCTAAACTAAGGATAAAAAtctaaatgagcttttgagcgcgCTGA
TTAGTTAACATCAACATCAACTCTCAATCATTTACACAAAGACTAGAACT
ttttcgctttcgctttcgtttttaactaTAAAGCAATTCAgttttggctg
aacaaccaacctcgtccccgtgtatcccaggctttatttacgttactgat
tgacgccagagaataattatctagcgctatcagtaagcatcaaaaagctg
ataatgcgcagggaacgaggttgctgAACAACCATAATAGAccttcataa
attacgttacgaacatcacttgcctcgttttgaaattattgccatggtga
tcaaCTCCAAGTGGATtgtattaaaactacttcctattcataaaaaaacc
atttaatgtctcaagagacataatcaccatagtAATTGTTTggatacgag
gcaagtgatgttcgtgacgtaatttatgacaAGGTCCATCAAGGTCGTAA
TATTCGAGAAAAAACGTAATTTCCCATGAAATCTTACTCACAAATGATTT
GGAAACACTCTTACTTTGATTGGAACTGAAGGGTAGAGCTTTAATTCTGA
GCTTTAATgctagacttaggaccttaggatctggggatccgaaagttaaa
aaatggtccaataaggctcagaatttagcctggaagtctatgaACCCCTC
TCAAATCGAAATATTCTATTATAATCAATAGATAAGTCCAAAAGCAACTT
TCTTGTCCGAGCTCTAAATTTCTAAAGACAAGGAAGTAACCAAAATGCTT
AATATATTTCGACACAGATTACAGGTCAGATTGTCACAATCTGAGTTCGA
TTCCCAATGTGGTATACTACGGTTCACTTGACAAGTGAACACACCTTCGC
CCTGGTCAACCCagaccatgtgaggggaattgagtaccactactctgata
caagagtgtgggtgaaATGTCAGACATTGTGGCGAGGGGTGTCACTCATG
CCCGTTCTACGCCTGTGACGAGCTATATGCTCTGTCACGTAGTTCGAGTG
TCATCACTGTATCATGGTATCTATTTCTCACGTGCACAAAGCCAGCAGTG
CTATCTTATCTTTCAAGACTTTTATCCTGACCAGTAAAACTTATTAGAAT
CGGGGTATCACTTTGGCCAACATCATGcaaagtacatgtttttttttaca
agcattgcacttataagcatatctaggctcaNTATGcaaagtacatgttt
tttttacaagcattgcacttataagcatatttaggctcagatatggggaa
aaattaagcatatggcaggcattacttgagcctacgaaaaatattctttc
cctgattttggctttttttggctggaattttacggattttcagcatttcc
ttaaatttatgctttagatttaaacatcccctcaagcatttttcatcCTT
ATTAAGCTTTCAAACTAaacatctctgagcctgtttttggatttttgtat
gcttataaaaaaaacatgtatatctCTGAAAAGGACCGTGATGGTTTTCT
AAGCAGGGGCTAGATTCTGCATAAAAAGAGAATATTtataaattgagttt
ttaatTTCATTAGGTGCAtccttttctttccttttgtACATTTAAAAGCA
TAGCCATTCAAAAGGCCTGTTGCTTGACTTTCAAAAGcaatagaaaatat
ttatttactcTATGTATACTATACATGCAATTGCGACTGTAGTGcggtgg
tagagcatccggctccGGAGTGCAAGGTCTAGGCTTCAATCTTCGGCCAA
AGACTTCGTACTCGATCCCTCTTTGCTTGGTTCTCAGTAATAAAGTGaat
gatcaagggtaagtggagcaattcaGGGAGAAAAAGTTGCggcctcccct
accttcgggtaaatAGGTATCGAAAGGGACTCGAGGGTTGCCTCCGAAAG
CGGTCGTAGACCTTGCAGTTCttatattcaacatttttagccttaaatCT
AAATCTATAGTtcataaaattagaaaaagttttttgttaatTCAAACAAT
GGATTCCTCCAGAAAATTGGGTTAGATGATTAAATGCCAAGAGGTGTTAA
AATATCTTAATGACCGTAGTGTGTAGTGTCCATTTGATGATATGCAACGC
AAGGGATCGATTTGATGTATGTTTAAGGGTAAACCAGGGGTggtcattga
aaaatataaactaACATGTCTCTTTTTGGAATGATCAAGGGAATACTCTA
AAGTATTTTTGTCAGATTGTAATGAGCTAATTTCAATAAAGCAGaatctc
ttttttttaatggtaGTTCGGTGACTGTTCAGCTATGTAAGGGGAGTAAG
CAGAAAATCGACATCTaagaaaaaaacctttttcatcTCGTAAAACGTTT
TCTGATTACTCATATTAAGGAGAAAACGGGGGAATATTTACAACCATCAA
TTTGTTTTAGAATCCCTGTAAACTTGATAATAAATTATTGACTAATCCTT
TACAAAAGAATTTTTGTATTGAAAtaagttaaatatttttgaagatatAA
GAAAttaagaagatgaaaaatatgTCGAGTAGTTTTAGCTTTTAACGAAA
AGAACATCAACTGGTTCTGCCCACAATACAGTTCAATTTTTTTAGGTGGC
GAGATCTACATGAAATATGGACAAAAttcaagaatatttcaaaatacttt
TCTGGCTGACATTTATCACAGGTCTGTATTTTACACATATCCGCTCACTC
GTGTGGGTGAATCTGAAATGAATAACATCTAACGAAACTGAATCTTAAAC
TAAATAAAAACCATAAAAGCTTCGGGTTTTGACTTTAAGGCATTTGCCGC
AATCCTGTTATTGACTGAGAATCAGCTAATGAAACAAAACCTTTCTGTCG
CAAATTATTTCAGCGCTGTCCCTGTCCCAGTGAAAATGTTGCTATCTTTA
CAACGATGGAGCTTTAAACATAACTTTGTTCTTAGATTCTCTATCGATCG
AATGTTATGAGTGTTCTGGAACTCACACGTATTGCAacaattcaagaaaa
acaacGACGTGCGATGGGCCACAGTATTCCTGCTTGTTGAGTTCGAGCAC
TACCCGTGTTCAAGTTATAAAGAACGGTGCATtaggaaatgaaattttga
caagCGTCACCAAATCGTGCGGTGTGGAAACACAGTCCTCATACTGCAAA
GATAAGCAAGATATGGACCCCAACATGCTTCTATGCCAGGTAGGTTTGTA
TTCTACATTATTCAACTGATACTTTCAAATATTCCTCTAGAGTCAAATAT
CGTACCATTTTTGCTAGTGCCCAGTTTTTTTTAATAGTTCCAAAATAAGC
GCTCATACGCttctgtctcagtgacccggtgaagTTTTTCAAGGTCACTA
AAGGGTTCGGAAAATTCCTAGGCCTAATCTGATAACTGATCACCCACTCT
ACGCCCCAAAATCTCAGAATCTCAGATTTTGTTAGAAGGGATTAACTTTG
AATTTTGTTTCAATATAGTCTAAAGCTTAGACAAGAAAAGGCtgttactt
ttgatagaattcaaattctctctgctgcaaattattttgaaacaGACTTA
CGTTAACAAAGGTAGATTTTAAACTAAGACGGGTGAATAAAGTTAATATA
CCATTTTAATTATTTCTAGACGAATTGGTGTTACAAAGATTTTTGCAATT
TCGATTTGAAGGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTT
GACCCTTATGGTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTA
CACTGTTATTCTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACT
TTTGAATTAACTGGAATGGTTTTGACCTTGACTATTCCTCGAAATAATGT
CCGTTGATCAATATTCGTTTATTATCCAGAGGCAACCGAGAGATTAGTTT
TGGAGACATTActaattttattgctttttaattgttattAAACTTTTGCT
CGATAATTTTGTA Coding sequence (CDS) from alignment at sc0000010:1132911..1139473+ >TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0000010:1132911..1139473+ (Clytia hemisphaerica) ATGGACAAAAttcaagaatatttcaaaatactttTCTGGCTGACATTTAT CACAGATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGT ATTGCAacaattcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCC TGCTTGTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGC ATtaggaaatgaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAA CACAGTCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTT CTATGCCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAA GGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATG GTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATT CTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTTGAATGGA CAAAAttcaagaatatttcaaaatactttTCTGGCTGACATTTATCACAG ATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGTATTGC AacaattcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCCTGCTT GTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGCATtag gaaatgaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAACACAG TCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTTCTATG CCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGACA TAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGG CATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATTCTGGT TTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTTGAATGGACAAAA ttcaagaatatttcaaaatactttTCTGGCTGACATTTATCACAGATTCT CTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGTATTGCAacaa ttcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCCTGCTTGTTGA GTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGCATtaggaaat gaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAACACAGTCCTC ATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTTCTATGCCAGA CGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGACATAAAA AAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGGCATAA AACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATTCTGGTTTGGT CATTGTTGGTGGTTTTGCTATTAATTTACTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001406-exon-sc0000010-1491911889:1132911..1132933 | TCONS_00001406-exon-sc0000010-1491911889:1132911..1132933 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1510915933:1132911..1132933 | TCONS_00001406-exon-sc0000010-1510915933:1132911..1132933 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1575043694:1132911..1132933 | TCONS_00001406-exon-sc0000010-1575043694:1132911..1132933 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1491911889:1133280..1133342 | TCONS_00001406-exon-sc0000010-1491911889:1133280..1133342 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1510915933:1133280..1133342 | TCONS_00001406-exon-sc0000010-1510915933:1133280..1133342 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1575043694:1133280..1133342 | TCONS_00001406-exon-sc0000010-1575043694:1133280..1133342 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1491911889:1138106..1138181 | TCONS_00001406-exon-sc0000010-1491911889:1138106..1138181 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1510915933:1138106..1138181 | TCONS_00001406-exon-sc0000010-1510915933:1138106..1138181 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1575043694:1138106..1138181 | TCONS_00001406-exon-sc0000010-1575043694:1138106..1138181 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1491911889:1138446..1138699 | TCONS_00001406-exon-sc0000010-1491911889:1138446..1138699 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1510915933:1138446..1138699 | TCONS_00001406-exon-sc0000010-1510915933:1138446..1138699 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1575043694:1138446..1138699 | TCONS_00001406-exon-sc0000010-1575043694:1138446..1138699 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1491911889:1139130..1139473 | TCONS_00001406-exon-sc0000010-1491911889:1139130..1139473 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1510915933:1139130..1139473 | TCONS_00001406-exon-sc0000010-1510915933:1139130..1139473 | Clytia hemisphaerica | exon |
TCONS_00001406-exon-sc0000010-1575043694:1139130..1139473 | TCONS_00001406-exon-sc0000010-1575043694:1139130..1139473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000010 | supercontig | sc0000010:1132911..1139473 + |
Blast
The following BLAST results are available for this feature:
|