TCONS_00001406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001406
Unique NameTCONS_00001406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=transcript|length=760bp
tggatctccaggctaaatAAAAGTTTACAAACTTGTGGATCACCCAATGT
TGAACAAGTGTAACATTTTACAGCATCCGCTTAAACGTGGCGAGATCTAC
ATGAAATATGGACAAAAttcaagaatatttcaaaatactttTCTGGCTGA
CATTTATCACAGATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACT
CACACGTATTGCAacaattcaagaaaaacaacGACGTGCGATGGGCCACA
GTATTCCTGCTTGTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGA
ACGGTGCATtaggaaatgaaattttgacaagCGTCACCAAATCGTGCGGT
GTGGAAACACAGTCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAA
CATGCTTCTATGCCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCG
ATTTGAAGGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGAC
CCTTATGGTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACAC
TGTTATTCTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTT
GAATTAACTGGAATGGTTTTGACCTTGACTATTCCTCGAAATAATGTCCG
TTGATCAATATTCGTTTATTATCCAGAGGCAACCGAGAGATTAGTTTTGG
AGACATTActaattttattgctttttaattgttattAAACTTTTGCTCGA
TAATTTTGTA
Run BLAST on NCBI

protein sequence of TCONS_00001406-protein

>TCONS_00001406-protein ID=TCONS_00001406-protein|Name=TCONS_00001406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MDKIQEYFKILFWLTFITDSLSIECYECSGTHTYCNNSRKTTTCDGPQYS
CLLSSSTTRVQVIKNGALGNEILTSVTKSCGVETQSSYCKDKQDMDPNML
LCQTNWCYKDFCNFDLKDIKKGAKIQTNQVDPYGWHKTSGAAPIKKYTVI
LVWSLLVVLLLIYF
Run BLAST on NCBI

transcript from alignment at sc0000010:1132911..1139473+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=transcript|length=6563bp|location=Sequence derived from alignment at sc0000010:1132911..1139473+ (Clytia hemisphaerica)
tggatctccaggctaaatAAAAGGTAATTTTCTACTCATATCACTACTTT
TGATGcgataggccttttcataaactaCGTCACGAACAACGCTTACATCA
TctctaaaatattgctatggtgaTTGATTCCCAGAGGACATGTTAATAAA
GGCCCGATTTTGGGCCAGTAAAGTTCTTACCCGGCAGGTATTAGGAATAa
cgtttttgacatttttacaatGTGAATCACAAACATCCAGTGTTGGATTT
GAACACTTCTTCACAAATCGAGGCCGTTGGCCTCCATTATGGCTTTCTTT
GTATGAAATTGTCAAGCATCTTGATCCAGAGACACATTCCCTCTGATTAT
CTTCCATTTCTTGCCATAGTTTACAAACTTGTGGATCACCCAATGTTGAA
CAAGTGTAACATTTTACAGCATCCGCTTAAACGTAAGAAGGTATTATATT
ATTACCGATAGATAGATTGAGTAAGCGACACTGCTTCTACTTATAACGTT
TTGACTTTAAAGATGCTGGTTGTCGATTCAAAGTATATAAACGCTAAAAC
TCGAAAGCTGCTGACACGAAAAAATTTTGCAGGACGCGATGCCATGTTGa
ttaattaaaaactccagcatagCAACAATAGCACAAAGGCATAATTAGTA
AACTCGTGTACTAAATATTTCTCATCATGGTTTTGATACTGGAGTCAGTA
GAATTTCTAAACATGACGTTGCAAGAATGATTTGTATGGAAACCTTTAAC
AACATTCTTGAATCATGAATGATAATCCAAGTATATTTTCCTAAACTTCA
CTTATCTTTATCTACTAAGCCACTTAGTGTTTACTTAGTTAcaaagaaaa
aagggaaattcccacgaaatcttacaaccacaaacgatttggaagtgctt
tAAATCAGGTTGAACGGGtctagagttttaactctgagttttaacgctag
acttaagaccttagggtctgaggaactaaaagtccaagaatggtccaata
gggctcagaatatagccttcccgaattgaaatattccaataaatttatca
atttgcccaaaagctttgcccgaactttaaattgctgaaaacgaggaatt
aaccaaaattcccaatatatttcgacccTGATTGTAATTTTATTAATCAG
TAAATCACCTATATTTCTAAGGCCCCTCCACAGCAGTTTGTGtggttgcg
tgaatgggcttttttttACGTGAATGcgtagaaattttgaaaaagctcCA
CGAATGCGTGATTtgaaatgcttttaaagaacagAAGGTGCgagaatttt
gaaaagaaattgcgtgaattttgaaaaaaaagatgcGTCATTGCGTGAAT
TTTTATTACTCACCTTTCTTAAGGACTccgaaaataaaaattgctgCAAC
AAACTTCCCAGTCATTCCTATTTGATTTTGCAAACGTGATGATAACTTAA
GTGactgaaactttctttttctttgactaTGTGGATGTTCTTTTCGTTAA
AAACTACTCGAcatatttttcatcttcttaaTTTCTTatatcttcaaaaa
tatttaacttatttcaattcaaaaattcttttgtaaAGGATTAGTCAATA
ATTTATTATCAAGTTTACAGGGATTCTAAAACAAATTGATGGTTGAAAAT
ATTCCCCCGTTTTCTCCTTAATATGAGTAATcagaaaacgtttttttata
gaaactggctttcagaaaatcaactgAGCTTGAAAACTCTGAGTGGAGAG
ATGGCGCATGGCACGTATTTacttagcctgggaatccaagcgttaaactt
ttttcacagtctagtttatgatatttttgctgctggtttaacgcttggtg
caggtaactcgcctgcagggacatttttccctgcaatgcaggttcgacCT
GATTGGCCAGCctttggcgtattacttagcagtactttcgcgcgcatttt
gataatttcaatgcgcgcgcataatttatggaaaaagctgactctgcaga
aaaaaggaaaacaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagactaatctacctgc
accaagctctataattttagaactttgtgaggtgaggtatttttagtttt
ttctaagattatgagcttggattcccaggctagtatTTACTCAAAAGGTC
ATAACACCGTAAGAGAACCTGCCCAGGTTTGCGAAACGCTTTGTGATATT
TTTCATCTAAACTAAGGATAAAAAtctaaatgagcttttgagcgcgCTGA
TTAGTTAACATCAACATCAACTCTCAATCATTTACACAAAGACTAGAACT
ttttcgctttcgctttcgtttttaactaTAAAGCAATTCAgttttggctg
aacaaccaacctcgtccccgtgtatcccaggctttatttacgttactgat
tgacgccagagaataattatctagcgctatcagtaagcatcaaaaagctg
ataatgcgcagggaacgaggttgctgAACAACCATAATAGAccttcataa
attacgttacgaacatcacttgcctcgttttgaaattattgccatggtga
tcaaCTCCAAGTGGATtgtattaaaactacttcctattcataaaaaaacc
atttaatgtctcaagagacataatcaccatagtAATTGTTTggatacgag
gcaagtgatgttcgtgacgtaatttatgacaAGGTCCATCAAGGTCGTAA
TATTCGAGAAAAAACGTAATTTCCCATGAAATCTTACTCACAAATGATTT
GGAAACACTCTTACTTTGATTGGAACTGAAGGGTAGAGCTTTAATTCTGA
GCTTTAATgctagacttaggaccttaggatctggggatccgaaagttaaa
aaatggtccaataaggctcagaatttagcctggaagtctatgaACCCCTC
TCAAATCGAAATATTCTATTATAATCAATAGATAAGTCCAAAAGCAACTT
TCTTGTCCGAGCTCTAAATTTCTAAAGACAAGGAAGTAACCAAAATGCTT
AATATATTTCGACACAGATTACAGGTCAGATTGTCACAATCTGAGTTCGA
TTCCCAATGTGGTATACTACGGTTCACTTGACAAGTGAACACACCTTCGC
CCTGGTCAACCCagaccatgtgaggggaattgagtaccactactctgata
caagagtgtgggtgaaATGTCAGACATTGTGGCGAGGGGTGTCACTCATG
CCCGTTCTACGCCTGTGACGAGCTATATGCTCTGTCACGTAGTTCGAGTG
TCATCACTGTATCATGGTATCTATTTCTCACGTGCACAAAGCCAGCAGTG
CTATCTTATCTTTCAAGACTTTTATCCTGACCAGTAAAACTTATTAGAAT
CGGGGTATCACTTTGGCCAACATCATGcaaagtacatgtttttttttaca
agcattgcacttataagcatatctaggctcaNTATGcaaagtacatgttt
tttttacaagcattgcacttataagcatatttaggctcagatatggggaa
aaattaagcatatggcaggcattacttgagcctacgaaaaatattctttc
cctgattttggctttttttggctggaattttacggattttcagcatttcc
ttaaatttatgctttagatttaaacatcccctcaagcatttttcatcCTT
ATTAAGCTTTCAAACTAaacatctctgagcctgtttttggatttttgtat
gcttataaaaaaaacatgtatatctCTGAAAAGGACCGTGATGGTTTTCT
AAGCAGGGGCTAGATTCTGCATAAAAAGAGAATATTtataaattgagttt
ttaatTTCATTAGGTGCAtccttttctttccttttgtACATTTAAAAGCA
TAGCCATTCAAAAGGCCTGTTGCTTGACTTTCAAAAGcaatagaaaatat
ttatttactcTATGTATACTATACATGCAATTGCGACTGTAGTGcggtgg
tagagcatccggctccGGAGTGCAAGGTCTAGGCTTCAATCTTCGGCCAA
AGACTTCGTACTCGATCCCTCTTTGCTTGGTTCTCAGTAATAAAGTGaat
gatcaagggtaagtggagcaattcaGGGAGAAAAAGTTGCggcctcccct
accttcgggtaaatAGGTATCGAAAGGGACTCGAGGGTTGCCTCCGAAAG
CGGTCGTAGACCTTGCAGTTCttatattcaacatttttagccttaaatCT
AAATCTATAGTtcataaaattagaaaaagttttttgttaatTCAAACAAT
GGATTCCTCCAGAAAATTGGGTTAGATGATTAAATGCCAAGAGGTGTTAA
AATATCTTAATGACCGTAGTGTGTAGTGTCCATTTGATGATATGCAACGC
AAGGGATCGATTTGATGTATGTTTAAGGGTAAACCAGGGGTggtcattga
aaaatataaactaACATGTCTCTTTTTGGAATGATCAAGGGAATACTCTA
AAGTATTTTTGTCAGATTGTAATGAGCTAATTTCAATAAAGCAGaatctc
ttttttttaatggtaGTTCGGTGACTGTTCAGCTATGTAAGGGGAGTAAG
CAGAAAATCGACATCTaagaaaaaaacctttttcatcTCGTAAAACGTTT
TCTGATTACTCATATTAAGGAGAAAACGGGGGAATATTTACAACCATCAA
TTTGTTTTAGAATCCCTGTAAACTTGATAATAAATTATTGACTAATCCTT
TACAAAAGAATTTTTGTATTGAAAtaagttaaatatttttgaagatatAA
GAAAttaagaagatgaaaaatatgTCGAGTAGTTTTAGCTTTTAACGAAA
AGAACATCAACTGGTTCTGCCCACAATACAGTTCAATTTTTTTAGGTGGC
GAGATCTACATGAAATATGGACAAAAttcaagaatatttcaaaatacttt
TCTGGCTGACATTTATCACAGGTCTGTATTTTACACATATCCGCTCACTC
GTGTGGGTGAATCTGAAATGAATAACATCTAACGAAACTGAATCTTAAAC
TAAATAAAAACCATAAAAGCTTCGGGTTTTGACTTTAAGGCATTTGCCGC
AATCCTGTTATTGACTGAGAATCAGCTAATGAAACAAAACCTTTCTGTCG
CAAATTATTTCAGCGCTGTCCCTGTCCCAGTGAAAATGTTGCTATCTTTA
CAACGATGGAGCTTTAAACATAACTTTGTTCTTAGATTCTCTATCGATCG
AATGTTATGAGTGTTCTGGAACTCACACGTATTGCAacaattcaagaaaa
acaacGACGTGCGATGGGCCACAGTATTCCTGCTTGTTGAGTTCGAGCAC
TACCCGTGTTCAAGTTATAAAGAACGGTGCATtaggaaatgaaattttga
caagCGTCACCAAATCGTGCGGTGTGGAAACACAGTCCTCATACTGCAAA
GATAAGCAAGATATGGACCCCAACATGCTTCTATGCCAGGTAGGTTTGTA
TTCTACATTATTCAACTGATACTTTCAAATATTCCTCTAGAGTCAAATAT
CGTACCATTTTTGCTAGTGCCCAGTTTTTTTTAATAGTTCCAAAATAAGC
GCTCATACGCttctgtctcagtgacccggtgaagTTTTTCAAGGTCACTA
AAGGGTTCGGAAAATTCCTAGGCCTAATCTGATAACTGATCACCCACTCT
ACGCCCCAAAATCTCAGAATCTCAGATTTTGTTAGAAGGGATTAACTTTG
AATTTTGTTTCAATATAGTCTAAAGCTTAGACAAGAAAAGGCtgttactt
ttgatagaattcaaattctctctgctgcaaattattttgaaacaGACTTA
CGTTAACAAAGGTAGATTTTAAACTAAGACGGGTGAATAAAGTTAATATA
CCATTTTAATTATTTCTAGACGAATTGGTGTTACAAAGATTTTTGCAATT
TCGATTTGAAGGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTT
GACCCTTATGGTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTA
CACTGTTATTCTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACT
TTTGAATTAACTGGAATGGTTTTGACCTTGACTATTCCTCGAAATAATGT
CCGTTGATCAATATTCGTTTATTATCCAGAGGCAACCGAGAGATTAGTTT
TGGAGACATTActaattttattgctttttaattgttattAAACTTTTGCT
CGATAATTTTGTA

Coding sequence (CDS) from alignment at sc0000010:1132911..1139473+

>TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0000010:1132911..1139473+ (Clytia hemisphaerica)
ATGGACAAAAttcaagaatatttcaaaatactttTCTGGCTGACATTTAT
CACAGATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGT
ATTGCAacaattcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCC
TGCTTGTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGC
ATtaggaaatgaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAA
CACAGTCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTT
CTATGCCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAA
GGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATG
GTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATT
CTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTTGAATGGA
CAAAAttcaagaatatttcaaaatactttTCTGGCTGACATTTATCACAG
ATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGTATTGC
AacaattcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCCTGCTT
GTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGCATtag
gaaatgaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAACACAG
TCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTTCTATG
CCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGACA
TAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGG
CATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATTCTGGT
TTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTTGAATGGACAAAA
ttcaagaatatttcaaaatactttTCTGGCTGACATTTATCACAGATTCT
CTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGTATTGCAacaa
ttcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCCTGCTTGTTGA
GTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGCATtaggaaat
gaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAACACAGTCCTC
ATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTTCTATGCCAGA
CGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGACATAAAA
AAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGGCATAA
AACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATTCTGGTTTGGT
CATTGTTGGTGGTTTTGCTATTAATTTACTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000744XLOC_000744Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001406-proteinTCONS_00001406-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001406-exon-sc0000010-1491911889:1132911..1132933TCONS_00001406-exon-sc0000010-1491911889:1132911..1132933Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1132911..1132933TCONS_00001406-exon-sc0000010-1510915933:1132911..1132933Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1132911..1132933TCONS_00001406-exon-sc0000010-1575043694:1132911..1132933Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1133280..1133342TCONS_00001406-exon-sc0000010-1491911889:1133280..1133342Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1133280..1133342TCONS_00001406-exon-sc0000010-1510915933:1133280..1133342Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1133280..1133342TCONS_00001406-exon-sc0000010-1575043694:1133280..1133342Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1138106..1138181TCONS_00001406-exon-sc0000010-1491911889:1138106..1138181Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1138106..1138181TCONS_00001406-exon-sc0000010-1510915933:1138106..1138181Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1138106..1138181TCONS_00001406-exon-sc0000010-1575043694:1138106..1138181Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1138446..1138699TCONS_00001406-exon-sc0000010-1491911889:1138446..1138699Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1138446..1138699TCONS_00001406-exon-sc0000010-1510915933:1138446..1138699Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1138446..1138699TCONS_00001406-exon-sc0000010-1575043694:1138446..1138699Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1139130..1139473TCONS_00001406-exon-sc0000010-1491911889:1139130..1139473Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1139130..1139473TCONS_00001406-exon-sc0000010-1510915933:1139130..1139473Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1139130..1139473TCONS_00001406-exon-sc0000010-1575043694:1139130..1139473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1132911..1139473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0774984	0	0	0	0	0.813625	1.5565	0.0365616	0	1.3534	1.91405	2.32716	2.93657	4.98031	3.34272	1.62417	1.94905	2.69609	2.40619	0.675416	0.47112	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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