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TCONS_00001406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001406
Unique NameTCONS_00001406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=transcript|length=760bp
tggatctccaggctaaatAAAAGTTTACAAACTTGTGGATCACCCAATGT
TGAACAAGTGTAACATTTTACAGCATCCGCTTAAACGTGGCGAGATCTAC
ATGAAATATGGACAAAAttcaagaatatttcaaaatactttTCTGGCTGA
CATTTATCACAGATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACT
CACACGTATTGCAacaattcaagaaaaacaacGACGTGCGATGGGCCACA
GTATTCCTGCTTGTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGA
ACGGTGCATtaggaaatgaaattttgacaagCGTCACCAAATCGTGCGGT
GTGGAAACACAGTCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAA
CATGCTTCTATGCCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCG
ATTTGAAGGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGAC
CCTTATGGTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACAC
TGTTATTCTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTT
GAATTAACTGGAATGGTTTTGACCTTGACTATTCCTCGAAATAATGTCCG
TTGATCAATATTCGTTTATTATCCAGAGGCAACCGAGAGATTAGTTTTGG
AGACATTActaattttattgctttttaattgttattAAACTTTTGCTCGA
TAATTTTGTA
Run BLAST on NCBI

protein sequence of TCONS_00001406-protein

>TCONS_00001406-protein ID=TCONS_00001406-protein|Name=TCONS_00001406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MDKIQEYFKILFWLTFITDSLSIECYECSGTHTYCNNSRKTTTCDGPQYS
CLLSSSTTRVQVIKNGALGNEILTSVTKSCGVETQSSYCKDKQDMDPNML
LCQTNWCYKDFCNFDLKDIKKGAKIQTNQVDPYGWHKTSGAAPIKKYTVI
LVWSLLVVLLLIYF
Run BLAST on NCBI

transcript from alignment at sc0000010:1132911..1139473+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=transcript|length=6563bp|location=Sequence derived from alignment at sc0000010:1132911..1139473+ (Clytia hemisphaerica)
tggatctccaggctaaatAAAAGGTAATTTTCTACTCATATCACTACTTT TGATGcgataggccttttcataaactaCGTCACGAACAACGCTTACATCA TctctaaaatattgctatggtgaTTGATTCCCAGAGGACATGTTAATAAA GGCCCGATTTTGGGCCAGTAAAGTTCTTACCCGGCAGGTATTAGGAATAa cgtttttgacatttttacaatGTGAATCACAAACATCCAGTGTTGGATTT GAACACTTCTTCACAAATCGAGGCCGTTGGCCTCCATTATGGCTTTCTTT GTATGAAATTGTCAAGCATCTTGATCCAGAGACACATTCCCTCTGATTAT CTTCCATTTCTTGCCATAGTTTACAAACTTGTGGATCACCCAATGTTGAA CAAGTGTAACATTTTACAGCATCCGCTTAAACGTAAGAAGGTATTATATT ATTACCGATAGATAGATTGAGTAAGCGACACTGCTTCTACTTATAACGTT TTGACTTTAAAGATGCTGGTTGTCGATTCAAAGTATATAAACGCTAAAAC TCGAAAGCTGCTGACACGAAAAAATTTTGCAGGACGCGATGCCATGTTGa ttaattaaaaactccagcatagCAACAATAGCACAAAGGCATAATTAGTA AACTCGTGTACTAAATATTTCTCATCATGGTTTTGATACTGGAGTCAGTA GAATTTCTAAACATGACGTTGCAAGAATGATTTGTATGGAAACCTTTAAC AACATTCTTGAATCATGAATGATAATCCAAGTATATTTTCCTAAACTTCA CTTATCTTTATCTACTAAGCCACTTAGTGTTTACTTAGTTAcaaagaaaa aagggaaattcccacgaaatcttacaaccacaaacgatttggaagtgctt tAAATCAGGTTGAACGGGtctagagttttaactctgagttttaacgctag acttaagaccttagggtctgaggaactaaaagtccaagaatggtccaata gggctcagaatatagccttcccgaattgaaatattccaataaatttatca atttgcccaaaagctttgcccgaactttaaattgctgaaaacgaggaatt aaccaaaattcccaatatatttcgacccTGATTGTAATTTTATTAATCAG TAAATCACCTATATTTCTAAGGCCCCTCCACAGCAGTTTGTGtggttgcg tgaatgggcttttttttACGTGAATGcgtagaaattttgaaaaagctcCA CGAATGCGTGATTtgaaatgcttttaaagaacagAAGGTGCgagaatttt gaaaagaaattgcgtgaattttgaaaaaaaagatgcGTCATTGCGTGAAT TTTTATTACTCACCTTTCTTAAGGACTccgaaaataaaaattgctgCAAC AAACTTCCCAGTCATTCCTATTTGATTTTGCAAACGTGATGATAACTTAA GTGactgaaactttctttttctttgactaTGTGGATGTTCTTTTCGTTAA AAACTACTCGAcatatttttcatcttcttaaTTTCTTatatcttcaaaaa tatttaacttatttcaattcaaaaattcttttgtaaAGGATTAGTCAATA ATTTATTATCAAGTTTACAGGGATTCTAAAACAAATTGATGGTTGAAAAT ATTCCCCCGTTTTCTCCTTAATATGAGTAATcagaaaacgtttttttata gaaactggctttcagaaaatcaactgAGCTTGAAAACTCTGAGTGGAGAG ATGGCGCATGGCACGTATTTacttagcctgggaatccaagcgttaaactt ttttcacagtctagtttatgatatttttgctgctggtttaacgcttggtg caggtaactcgcctgcagggacatttttccctgcaatgcaggttcgacCT GATTGGCCAGCctttggcgtattacttagcagtactttcgcgcgcatttt gataatttcaatgcgcgcgcataatttatggaaaaagctgactctgcaga aaaaaggaaaacaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagactaatctacctgc accaagctctataattttagaactttgtgaggtgaggtatttttagtttt ttctaagattatgagcttggattcccaggctagtatTTACTCAAAAGGTC ATAACACCGTAAGAGAACCTGCCCAGGTTTGCGAAACGCTTTGTGATATT TTTCATCTAAACTAAGGATAAAAAtctaaatgagcttttgagcgcgCTGA TTAGTTAACATCAACATCAACTCTCAATCATTTACACAAAGACTAGAACT ttttcgctttcgctttcgtttttaactaTAAAGCAATTCAgttttggctg aacaaccaacctcgtccccgtgtatcccaggctttatttacgttactgat tgacgccagagaataattatctagcgctatcagtaagcatcaaaaagctg ataatgcgcagggaacgaggttgctgAACAACCATAATAGAccttcataa attacgttacgaacatcacttgcctcgttttgaaattattgccatggtga tcaaCTCCAAGTGGATtgtattaaaactacttcctattcataaaaaaacc atttaatgtctcaagagacataatcaccatagtAATTGTTTggatacgag gcaagtgatgttcgtgacgtaatttatgacaAGGTCCATCAAGGTCGTAA TATTCGAGAAAAAACGTAATTTCCCATGAAATCTTACTCACAAATGATTT GGAAACACTCTTACTTTGATTGGAACTGAAGGGTAGAGCTTTAATTCTGA GCTTTAATgctagacttaggaccttaggatctggggatccgaaagttaaa aaatggtccaataaggctcagaatttagcctggaagtctatgaACCCCTC TCAAATCGAAATATTCTATTATAATCAATAGATAAGTCCAAAAGCAACTT TCTTGTCCGAGCTCTAAATTTCTAAAGACAAGGAAGTAACCAAAATGCTT AATATATTTCGACACAGATTACAGGTCAGATTGTCACAATCTGAGTTCGA TTCCCAATGTGGTATACTACGGTTCACTTGACAAGTGAACACACCTTCGC CCTGGTCAACCCagaccatgtgaggggaattgagtaccactactctgata caagagtgtgggtgaaATGTCAGACATTGTGGCGAGGGGTGTCACTCATG CCCGTTCTACGCCTGTGACGAGCTATATGCTCTGTCACGTAGTTCGAGTG TCATCACTGTATCATGGTATCTATTTCTCACGTGCACAAAGCCAGCAGTG CTATCTTATCTTTCAAGACTTTTATCCTGACCAGTAAAACTTATTAGAAT CGGGGTATCACTTTGGCCAACATCATGcaaagtacatgtttttttttaca agcattgcacttataagcatatctaggctcaNTATGcaaagtacatgttt tttttacaagcattgcacttataagcatatttaggctcagatatggggaa aaattaagcatatggcaggcattacttgagcctacgaaaaatattctttc cctgattttggctttttttggctggaattttacggattttcagcatttcc ttaaatttatgctttagatttaaacatcccctcaagcatttttcatcCTT ATTAAGCTTTCAAACTAaacatctctgagcctgtttttggatttttgtat gcttataaaaaaaacatgtatatctCTGAAAAGGACCGTGATGGTTTTCT AAGCAGGGGCTAGATTCTGCATAAAAAGAGAATATTtataaattgagttt ttaatTTCATTAGGTGCAtccttttctttccttttgtACATTTAAAAGCA TAGCCATTCAAAAGGCCTGTTGCTTGACTTTCAAAAGcaatagaaaatat ttatttactcTATGTATACTATACATGCAATTGCGACTGTAGTGcggtgg tagagcatccggctccGGAGTGCAAGGTCTAGGCTTCAATCTTCGGCCAA AGACTTCGTACTCGATCCCTCTTTGCTTGGTTCTCAGTAATAAAGTGaat gatcaagggtaagtggagcaattcaGGGAGAAAAAGTTGCggcctcccct accttcgggtaaatAGGTATCGAAAGGGACTCGAGGGTTGCCTCCGAAAG CGGTCGTAGACCTTGCAGTTCttatattcaacatttttagccttaaatCT AAATCTATAGTtcataaaattagaaaaagttttttgttaatTCAAACAAT GGATTCCTCCAGAAAATTGGGTTAGATGATTAAATGCCAAGAGGTGTTAA AATATCTTAATGACCGTAGTGTGTAGTGTCCATTTGATGATATGCAACGC AAGGGATCGATTTGATGTATGTTTAAGGGTAAACCAGGGGTggtcattga aaaatataaactaACATGTCTCTTTTTGGAATGATCAAGGGAATACTCTA AAGTATTTTTGTCAGATTGTAATGAGCTAATTTCAATAAAGCAGaatctc ttttttttaatggtaGTTCGGTGACTGTTCAGCTATGTAAGGGGAGTAAG CAGAAAATCGACATCTaagaaaaaaacctttttcatcTCGTAAAACGTTT TCTGATTACTCATATTAAGGAGAAAACGGGGGAATATTTACAACCATCAA TTTGTTTTAGAATCCCTGTAAACTTGATAATAAATTATTGACTAATCCTT TACAAAAGAATTTTTGTATTGAAAtaagttaaatatttttgaagatatAA GAAAttaagaagatgaaaaatatgTCGAGTAGTTTTAGCTTTTAACGAAA AGAACATCAACTGGTTCTGCCCACAATACAGTTCAATTTTTTTAGGTGGC GAGATCTACATGAAATATGGACAAAAttcaagaatatttcaaaatacttt TCTGGCTGACATTTATCACAGGTCTGTATTTTACACATATCCGCTCACTC GTGTGGGTGAATCTGAAATGAATAACATCTAACGAAACTGAATCTTAAAC TAAATAAAAACCATAAAAGCTTCGGGTTTTGACTTTAAGGCATTTGCCGC AATCCTGTTATTGACTGAGAATCAGCTAATGAAACAAAACCTTTCTGTCG CAAATTATTTCAGCGCTGTCCCTGTCCCAGTGAAAATGTTGCTATCTTTA CAACGATGGAGCTTTAAACATAACTTTGTTCTTAGATTCTCTATCGATCG AATGTTATGAGTGTTCTGGAACTCACACGTATTGCAacaattcaagaaaa acaacGACGTGCGATGGGCCACAGTATTCCTGCTTGTTGAGTTCGAGCAC TACCCGTGTTCAAGTTATAAAGAACGGTGCATtaggaaatgaaattttga caagCGTCACCAAATCGTGCGGTGTGGAAACACAGTCCTCATACTGCAAA GATAAGCAAGATATGGACCCCAACATGCTTCTATGCCAGGTAGGTTTGTA TTCTACATTATTCAACTGATACTTTCAAATATTCCTCTAGAGTCAAATAT CGTACCATTTTTGCTAGTGCCCAGTTTTTTTTAATAGTTCCAAAATAAGC GCTCATACGCttctgtctcagtgacccggtgaagTTTTTCAAGGTCACTA AAGGGTTCGGAAAATTCCTAGGCCTAATCTGATAACTGATCACCCACTCT ACGCCCCAAAATCTCAGAATCTCAGATTTTGTTAGAAGGGATTAACTTTG AATTTTGTTTCAATATAGTCTAAAGCTTAGACAAGAAAAGGCtgttactt ttgatagaattcaaattctctctgctgcaaattattttgaaacaGACTTA CGTTAACAAAGGTAGATTTTAAACTAAGACGGGTGAATAAAGTTAATATA CCATTTTAATTATTTCTAGACGAATTGGTGTTACAAAGATTTTTGCAATT TCGATTTGAAGGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTT GACCCTTATGGTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTA CACTGTTATTCTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACT TTTGAATTAACTGGAATGGTTTTGACCTTGACTATTCCTCGAAATAATGT CCGTTGATCAATATTCGTTTATTATCCAGAGGCAACCGAGAGATTAGTTT TGGAGACATTActaattttattgctttttaattgttattAAACTTTTGCT CGATAATTTTGTA

Coding sequence (CDS) from alignment at sc0000010:1132911..1139473+

>TCONS_00001406 ID=TCONS_00001406|Name=TCONS_00001406|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0000010:1132911..1139473+ (Clytia hemisphaerica)
ATGGACAAAAttcaagaatatttcaaaatactttTCTGGCTGACATTTAT
CACAGATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGT
ATTGCAacaattcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCC
TGCTTGTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGC
ATtaggaaatgaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAA
CACAGTCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTT
CTATGCCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAA
GGACATAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATG
GTTGGCATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATT
CTGGTTTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTTGAATGGA
CAAAAttcaagaatatttcaaaatactttTCTGGCTGACATTTATCACAG
ATTCTCTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGTATTGC
AacaattcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCCTGCTT
GTTGAGTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGCATtag
gaaatgaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAACACAG
TCCTCATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTTCTATG
CCAGACGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGACA
TAAAAAAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGG
CATAAAACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATTCTGGT
TTGGTCATTGTTGGTGGTTTTGCTATTAATTTACTTTTGAATGGACAAAA
ttcaagaatatttcaaaatactttTCTGGCTGACATTTATCACAGATTCT
CTATCGATCGAATGTTATGAGTGTTCTGGAACTCACACGTATTGCAacaa
ttcaagaaaaacaacGACGTGCGATGGGCCACAGTATTCCTGCTTGTTGA
GTTCGAGCACTACCCGTGTTCAAGTTATAAAGAACGGTGCATtaggaaat
gaaattttgacaagCGTCACCAAATCGTGCGGTGTGGAAACACAGTCCTC
ATACTGCAAAGATAAGCAAGATATGGACCCCAACATGCTTCTATGCCAGA
CGAATTGGTGTTACAAAGATTTTTGCAATTTCGATTTGAAGGACATAAAA
AAGGGTGCTAAAATACAGACCAATCAAGTTGACCCTTATGGTTGGCATAA
AACTTCAGGAGCAGCACCAATTAAAAAGTACACTGTTATTCTGGTTTGGT
CATTGTTGGTGGTTTTGCTATTAATTTACTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000744XLOC_000744Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001406-proteinTCONS_00001406-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001406-exon-sc0000010-1491911889:1132911..1132933TCONS_00001406-exon-sc0000010-1491911889:1132911..1132933Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1132911..1132933TCONS_00001406-exon-sc0000010-1510915933:1132911..1132933Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1132911..1132933TCONS_00001406-exon-sc0000010-1575043694:1132911..1132933Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1133280..1133342TCONS_00001406-exon-sc0000010-1491911889:1133280..1133342Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1133280..1133342TCONS_00001406-exon-sc0000010-1510915933:1133280..1133342Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1133280..1133342TCONS_00001406-exon-sc0000010-1575043694:1133280..1133342Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1138106..1138181TCONS_00001406-exon-sc0000010-1491911889:1138106..1138181Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1138106..1138181TCONS_00001406-exon-sc0000010-1510915933:1138106..1138181Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1138106..1138181TCONS_00001406-exon-sc0000010-1575043694:1138106..1138181Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1138446..1138699TCONS_00001406-exon-sc0000010-1491911889:1138446..1138699Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1138446..1138699TCONS_00001406-exon-sc0000010-1510915933:1138446..1138699Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1138446..1138699TCONS_00001406-exon-sc0000010-1575043694:1138446..1138699Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1491911889:1139130..1139473TCONS_00001406-exon-sc0000010-1491911889:1139130..1139473Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1510915933:1139130..1139473TCONS_00001406-exon-sc0000010-1510915933:1139130..1139473Clytia hemisphaericaexon
TCONS_00001406-exon-sc0000010-1575043694:1139130..1139473TCONS_00001406-exon-sc0000010-1575043694:1139130..1139473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1132911..1139473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0.0774984 0 0 0 0 0.813625 1.5565 0.0365616 0 1.3534 1.91405 2.32716 2.93657 4.98031 3.34272 1.62417 1.94905 2.69609 2.40619 0.675416 0.47112 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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