|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001405 ID=TCONS_00001405|Name=TCONS_00001405|organism=Clytia hemisphaerica|type=transcript|length=3763bpRun BLAST on NCBI protein sequence of TCONS_00001405-protein >TCONS_00001405-protein ID=TCONS_00001405-protein|Name=TCONS_00001405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1072bp MADEGKEELTKNEAETPQDPAVEAPTVENDNTEQKGDGDDTSNSSYIVAVRun BLAST on NCBI transcript from alignment at sc0000010:1110798..1128334+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001405 ID=TCONS_00001405|Name=TCONS_00001405|organism=Clytia hemisphaerica|type=transcript|length=17537bp|location=Sequence derived from alignment at sc0000010:1110798..1128334+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:1110798..1128334+ >TCONS_00001405 ID=TCONS_00001405|Name=TCONS_00001405|organism=Clytia hemisphaerica|type=CDS|length=54723bp|location=Sequence derived from alignment at sc0000010:1110798..1128334+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001405 vs. Swiss-Prot (Human)
Match: AT1A1 (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens GN=ATP1A1 PE=1 SV=1) HSP 1 Score: 1539.24 bits (3984), Expect = 0.000e+0 Identity = 744/987 (75.38%), Postives = 857/987 (86.83%), Query Frame = 3
Query: 342 ELELTCHSENLDDLIAQYETNLTTGLTKEIAARNLERDGPNALSPPKQTPEWIKFCKQLFGGFSMLLWVGAILCFFAYGIRTVREDDPSQDELYLGIVLAVVVIITGCFSYYQEAKSSKIMESFKKMIPQEATVLRDGAKIQINAEECTIGDIVFVKFGDRIPADIRVIESMGFKVDNSSLTGESEPQSRNSECTSENPLETKNLAFFSTNAVEGTATGMVVNIGDNTVMGRIANLASGLGAGKTPIALELEHFIHIITGVAVFLGVTFLIISLAMDYHWLEAIIFLIGIIVANVPEGXXXXXXXXXXXXXKKMAAKNCLVKHLEAVETLGSTSVICSDKTGTLTQNRMTVAHMWFDKMIIEADTTEDQSGLSHDKGSSTWKALAKIGGLCNRAEFKEGQEDLPILRKECNGDASETAILKFVELSVGNVMDMRSKNGKVVEIPFNSTNKYQVSIHKQEDEKDPRYLLVMKGAPERILDRCSTILLQGEEKPLDDEMKDAFNDAYLQLGGLGERVLGFCHYYLPAENFPEGFEFQTDDPCNFPLDNLCFVGLMSMIDPPRAAVPDAVSKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAQRLNIPVEEVNPRDAHAAVVHGTQLKDLSAEDIDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLMFILLSIPLPLGTVTILCIDLGTDLIPAISLAYEKAETDIMKRKPRDPIRDKLVNERLISLAYGQIGMIQAIAGFFTYFVIMAENGFLPSFLMGIRSQWDDKNNNSVIDSYGSEWTYSQRKDLELTCHTAFFTTIVVVQWADVIISKTRRLSVFTQGMTNWMLNFGLVFETLLAAFLQYTPGLSTGLRLRPLNASWWFCGVPFSLLIWIYDEIRRYLLRKYPGGWVEQETYY 3302
E+ + H +LD+L +Y T+L+ GLT AA L RDGPNAL+PP TPEWIKFC+QLFGGFSMLLW+GAILCF AY I+ E++P D LYLG+VL+ VVIITGCFSYYQEAKSSKIMESFK M+PQ+A V+R+G K+ INAEE +GD+V VK GDRIPAD+R+I + G KVDNSSLTGESEPQ+R+ + T+ENPLET+N+AFFSTN VEGTA G+VV GD TVMGRIA LASGL G+TPIA E+EHFIHIITGVAVFLGV+F I+SL ++Y WLEA+IFLIGIIVANVPEGLLATVTVCLTLTAK+MA KNCLVK+LEAVETLGSTS ICSDKTGTLTQNRMTVAHMWFD I EADTTE+QSG+S DK S+TW AL++I GLCNRA F+ QE+LPIL++ GDASE+A+LK +EL G+V +MR + K+VEIPFNSTNKYQ+SIHK + +P++LLVMKGAPERILDRCS+ILL G+E+PLD+E+KDAF +AYL+LGGLGERVLGFCH +LP E FPEGF+F TDD NFP+DNLCFVGL+SMIDPPRAAVPDAV KCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIA RLNIPV +VNPRDA A VVHG+ LKD+++E +DDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI+PFL+FI+ +IPLPLGTVTILCIDLGTD++PAISLAYE+AE+DIMKR+PR+P DKLVNERLIS+AYGQIGMIQA+ GFFTYFVI+AENGFLP L+G+R WDD+ N V DSYG +WTY QRK +E TCHTAFF +IVVVQWAD++I KTRR SVF QGM N +L FGL ET LAAFL Y PG+ LR+ PL +WWFC P+SLLI++YDE+R+ ++R+ PGGWVE+ETYY
Sbjct: 38 EVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSMLLWIGAILCFLAYSIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYAKIVEIPFNSTNKYQLSIHKNPNTSEPQHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDD-VNFPIDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPIHLLGLRVDWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTAFFVSIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY 1023 The following BLAST results are available for this feature:
BLAST of TCONS_00001405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.