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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001401 ID=TCONS_00001401|Name=TCONS_00001401|organism=Clytia hemisphaerica|type=transcript|length=3609bpRun BLAST on NCBI transcript from alignment at sc0000010:1069472..1103646+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001401 ID=TCONS_00001401|Name=TCONS_00001401|organism=Clytia hemisphaerica|type=transcript|length=34175bp|location=Sequence derived from alignment at sc0000010:1069472..1103646+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001401 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 1.186e-37 Identity = 134/379 (35.36%), Postives = 164/379 (43.27%), Query Frame = 2
Query: 674 LDGDWSQWGPWDVCRRPCFHGDQFRRRTCTNPAPQKGGRGCPESSGHHRMCNPNSCKDLDLHSSCKREQGECLDESGRGRIQTMGKKLNHGKEKDCLEKCMDQLYYGSGCTFIKSTGYCYTHTKRVAGGNGDDGAFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQT---RNC-------------------------KTR--XNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAXXXXXXXXXXXXXXXXXXXXXXXNPAPRHGGRECGDSNTHTLNCNLKSCPIVVHGKWSEWGSWGKCSASCGSGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 1720
+ G +SQW W C C G Q R R C P P GG+ C S R C C +D S EC GRG N + + C + H R GN + C + + C ++G WS W WG CS SCG G QTR R CNNP P GG C ++ Q RNC +TR +P+P GG C SD Q+ C + CPTHG WS W WG CS +C GG+ R RTC NP P +GGR CG ++ CN CP V G W W SW +CSASCG G+KTR R C +P P GGR C + + +CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP-VDGSWSEWSLWEECTRSCGRG---------NQTRTRTCNNPSVQ-------------------HGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSD--VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP--VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG--DTTQVTRCNVQACP 4869 HSP 2 Score: 129.413 bits (324), Expect = 8.626e-30 Identity = 96/242 (39.67%), Postives = 121/242 (50.00%), Query Frame = 2
Query: 1100 CKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSD---------------------------------NDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAXXXXXXXXXXXXXXXXXXXXXXXNPAPRHGGRECGDSNTHTLNCNLKSCPIVVHGKWSEWGSWGKCSASCGSGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCPNN 1726
+++G +S+W AW CSV+CG G Q R R CN P+P GG C SD N ++TR C NP GG C N + C R CP HG WSAW WG CS SCG G +TR R C NP P GG C + T CN ++CPI HGKW+ W SW CS SCG G + RTR C++P PQ GGR C +D+++ CN++ CP +
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCN---NPSVQHGGRPC--EGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEG--SDVQSDFCNSDPCPTH 4757 The following BLAST results are available for this feature:
BLAST of TCONS_00001401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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