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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001400 ID=TCONS_00001400|Name=TCONS_00001400|organism=Clytia hemisphaerica|type=transcript|length=2561bpRun BLAST on NCBI transcript from alignment at sc0000010:1069472..1100889+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001400 ID=TCONS_00001400|Name=TCONS_00001400|organism=Clytia hemisphaerica|type=transcript|length=31418bp|location=Sequence derived from alignment at sc0000010:1069472..1100889+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001400 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 1.045e-49 Identity = 150/407 (36.86%), Postives = 182/407 (44.72%), Query Frame = 2
Query: 674 LDGDWSQWGPWDVCRRPCFHGDQFRRRTCTNPAPQKGGRGCPESSGHHRMCNPNSCKDLDLHSSCKREQGECLDESGRGRIQTMGKKLNHGKEKDCLEKCMDQLYYGSGCTFIKSTGYCYTHTKRVAGGNGDDGAFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAXXXXXXXXXXXXXXXXXXXXXXXNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPRHGGRECGDSNTHTLNCNLKSCPIVVHGKWSEWGSWGKCSASCGSGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 1894
+ G +SQW W C C G Q R R C P P GG+ C S R C C +D S EC GRG N + + C + H R GN + C + + C ++G WS W WG CS SCG G QTR R CNNP P GG C ++ +Q + C R CP HGKW+ W SW CS SCGGG + RTR C++P P++GG C S CN CP THG WS W WG CS +C GQ R RTC NP P +GGR CG ++ CN CP V G W W SW +CSASCG G+KTR R C +P P GGR C + + +CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP-VDGSWSEWSLWEECTRSCGRG---------NQTRTRTCNNPSVQ-------------------HGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAE-----------------------------TQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP-THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP--VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG--DTTQVTRCNVQACP 4869 HSP 2 Score: 180.259 bits (456), Expect = 3.848e-46 Identity = 113/267 (42.32%), Postives = 147/267 (55.06%), Query Frame = 2
Query: 1100 CKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAXXXXXXXXXXXXXXXXXXXXXXXNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPRHGGRECGDSNTHTLNCNLKSCPIVVHGKWSEWGSWGKCSASCGSGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCPNN 1900
+++G +S+W AW CSV+CG G Q R R CN P+P GG C S D + RNC+ + CP G WS W W +C+ SCG G +TRTRTC NP+ +HGG C + I+ CN++ C P HG WS W WG CS SCG G +TR R C NP P GG C + T CN ++CPI HGKW+ W SW CS SCG G + RTR C++P PQ GGR C +D+++ CN++ CP +
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGS-----------------------------DLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC-PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEG--SDVQSDFCNSDPCPTH 4757 The following BLAST results are available for this feature:
BLAST of TCONS_00001400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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