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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001393 ID=TCONS_00001393|Name=TCONS_00001393|organism=Clytia hemisphaerica|type=transcript|length=1976bp
CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA
ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa
tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC
TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA
GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA
AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA
TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG
GTTGGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAA
ACGAGCAGCAAGTTTGATTACACTGGTGTTGGGCAAAGAAGAACAATTTG
GTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTT
CACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGT
GTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATG
CCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAA
GCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAA
AATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATAC
AAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAG
TGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCC
ATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgt
caataaatattttcaaacccTATTGGGACGTTTTTGATAAAAGTATATCA
CAATTGTGCTTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCATTCTT
TTATCTATTTACTctatttaaccctattcgtactggGGGATGGCTTCTTC
TGTTTAGCGGGGAAACAAATGCTTATAGCTCCTAACATGATAGATCTTTT
GGCAtgaatttctattttatttagcttcaaaataaaaaaaaattgacacg
cCTTGTCAGCATATTGTCATTTCTGAATGAAAGGTGTATGTTGTAAAAAT
TGACATATTTTCagtataaatttatttttcaaatcacatacacgcttttt
ttataagaatatcttctataagaatatcagggtgaaaattggccaaatcg
taagaataccctaaaaATACCCTCtaggttgaatttcaaaaaatttgata
agaatacagtcattttgtatttggctAACAGAAAAAACTGCATTTGTTAG
AGATAGAATGAAGCTTTaaggaagaaatgtaattttaacccaaatatTCA
CTCAAAGTCCAAAGTTTTCAAATTGATTATTTCTCAtgcttgttaaaagt
caagtctaaaaaagtaagaatactttaagaatatttcaccctcaactttg
gcactttcttaagaacatttgaccctcatccaaagtatactattcttata
aaaaaatgcgtGTATACTGTtcaaaccgtaatttattgaatatttaggat
aaaataaacttcgaacttttttctaaagcctttgtttcGTCCTTTGAGAG
AACAGAGGAAAGACTATCTTATATACTCTAATCTAACAAAAATGTCGTTT
GCTGACGGAATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGCTTTTC
CTTTTTCAGAGGAATGTATAtgctaaattttgactttgggtCATCTTTTT
GTTGAGGATATACTCCACTTTTTGCTACTTCACATGCGTACGCGTGCGCA
GAGAGTCAGACTATCGGGCTTTTATGTCGAttccagatgagatggagttt
ttataacatactttaataattggcca Run BLAST on NCBI transcript from alignment at sc0000010:958156..961402+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001393 ID=TCONS_00001393|Name=TCONS_00001393|organism=Clytia hemisphaerica|type=transcript|length=3247bp|location=Sequence derived from alignment at sc0000010:958156..961402+ (Clytia hemisphaerica)
CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA
ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa
tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC
TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA
GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA
AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA
TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG
GTTGGGTTTATTATGAGAAAAGTGAAGTAAGTTTATGCCACTGTGATATC
TGCTGCTAAGCTAGACTCAATTCTTTTATGCTTTGGATGCAGGCTATGCC
ACTAAAATGGAGTCCTTATACCCATAGTGAATCTTGTTTGATCGGTGATA
AAtttagacaggagacccgtcctgtatttttataatctgatgtatacagg
atgTTTACGACCTGTGAGacagatttctgcctcaaaaaatttacagtggg
aaattcaaATTTAGCGCTGTcttcacttactaaaataaaaatcaaatttc
ggaacttgtgctttctctaagaaagtgtgaccagtaaaagaataacaaaa
tttgattggttatgttttcaaccgttattaggatctgggaaattcaaact
ctcagcccataccatgctatatatttcgacatcagtatatagaataagaa
atcatagcatgggtCTCCAGGCTACGATAAATTAGCCTCAAAACTTCACC
TAATCGGTGACACAAGGGAAATCATCTTTGTTACATATACTTTTCAGTAG
AGCAAAGACAAGGTGGgagcaaaatttgtgtaggagagcagaattttatg
ataattataATGATTTTaggataattactgtgtcataaaaatctgcccTT
CTACAGAGATTTCACGCCCCCCCCCTTGTCTACGCCACTGCTTTCTTTCT
TTAGGACACTGAACCAATTGTAGCCAAAACGAGCAGCAAGTTTGATTACA
CTGGTGTTGGTAAGTCTTATTTAATTTGATGTTGAAGTGAAGCTAAAATA
CTCAAAGTGAAGCGTAAAATCTTTGATTAACTGTTTTGCTGTTTTCGTGC
GGGGGAGGGGTACCAGGTACCAGATGATTTGACCAGATATGTGTTAGCGt
tcgaaaatctttcaaataatttgaaaatctactcattctttaaaggtttt
gtttttaagtaagagtgatatcatttgtttactcatcaattttaattcac
aagcttttgcacattgaattgacacggatgtggagcaagattagtcaaaa
agaggaaaagaaaaacatttttttgcttgtatcaAAATagtataacaata
ggcagacactgtcctgatatgaaatatatgtgtctgatatgaaacgggag
caCTTATGTAAAGATAAAAGGTTTGCGCTCAACATTGGTGGGTATATATT
AGGGTATATATTAGTTTATAAACATCCTGTCGTACAAGAAGGTaaccagc
cggcacacaacgttatttcaacgtccatataacgttagaagaacgttaaa
acaacgttgtgtgccagctgggtaagaAATGTCTTTTCTCTACAGCGTTC
AGGGCAAAGAAGAACAATTTGGTACACATCATTCCATTCATTGGCAAAGA
ATTCACATTCGAATTCAACTTCACTTACTTCACTACTGACAGCTCTGTAG
AATACTCGTGCGCTTTATTGTGTACAACGTTTTCTGCTTGGACGGAAAGA
TATCCTGCTATTTGGATCATGCCAGGCGGATTAGTTCAATTTGAAGTGTC
TTATGATGTTGAGCAAACTAAGCCAACTAAAACACTTATTGCAAAAAATA
AGGTACGCGAACCAAACCAAAAATACAACATGCTGGTTTCATCAACTTAC
GATTCTACCTCTGGAAAATACAAGTTCATTTTTAAAGTGGATGGAGTCAT
AGAGACCTCTACCACAGTCAGTGACGTGCCAGAATTTCAGAATCTAAAAT
GCTATGTCGGCGACCCTGGCCATACACCATCGTATGCCGTCATCGAAGAC
TTCAAATTCAAACCGGAAGgtcaataaatattttcaaacccTATTGGGAC
GTTTTTGATAAAAGTATATCACAATTGTGCTTAAATTCTGCGTCGCTTAT
CGGGTTTGTTGGTGCATTCTTTTATCTATTTACTctatttaaccctattc
gtactggGGGATGGCTTCTTCTGTTTAGCGGGGAAACAAATGCTTATAGC
TCCTAACATGATAGATCTTTTGGCAtgaatttctattttatttagcttca
aaataaaaaaaaattgacacgcCTTGTCAGCATATTGTCATTTCTGAATG
AAAGGTGTATGTTGTAAAAATTGACATATTTTCagtataaatttattttt
caaatcacatacacgctttttttataagaatatcttctataagaatatca
gggtgaaaattggccaaatcgtaagaataccctaaaaATACCCTCtaggt
tgaatttcaaaaaatttgataagaatacagtcattttgtatttggctAAC
AGAAAAAACTGCATTTGTTAGAGATAGAATGAAGCTTTaaggaagaaatg
taattttaacccaaatatTCACTCAAAGTCCAAAGTTTTCAAATTGATTA
TTTCTCAtgcttgttaaaagtcaagtctaaaaaagtaagaatactttaag
aatatttcaccctcaactttggcactttcttaagaacatttgaccctcat
ccaaagtatactattcttataaaaaaatgcgtGTATACTGTtcaaaccgt
aatttattgaatatttaggataaaataaacttcgaacttttttctaaagc
ctttgtttcGTCCTTTGAGAGAACAGAGGAAAGACTATCTTATATACTCT
AATCTAACAAAAATGTCGTTTGCTGACGGAATATCAATAGTCGCGTCTTC
TTTAAGAAATATCTGCTTTTCCTTTTTCAGAGGAATGTATAtgctaaatt
ttgactttgggtCATCTTTTTGTTGAGGATATACTCCACTTTTTGCTACT
TCACATGCGTACGCGTGCGCAGAGAGTCAGACTATCGGGCTTTTATGTCG
Attccagatgagatggagtttttataacatactttaataattggcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001393-exon-sc0000010-1491911889:958156..958531 | TCONS_00001393-exon-sc0000010-1491911889:958156..958531 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1510915933:958156..958531 | TCONS_00001393-exon-sc0000010-1510915933:958156..958531 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1575043694:958156..958531 | TCONS_00001393-exon-sc0000010-1575043694:958156..958531 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1491911889:959210..959264 | TCONS_00001393-exon-sc0000010-1491911889:959210..959264 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1510915933:959210..959264 | TCONS_00001393-exon-sc0000010-1510915933:959210..959264 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1575043694:959210..959264 | TCONS_00001393-exon-sc0000010-1575043694:959210..959264 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1491911889:959858..961402 | TCONS_00001393-exon-sc0000010-1491911889:959858..961402 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1510915933:959858..961402 | TCONS_00001393-exon-sc0000010-1510915933:959858..961402 | Clytia hemisphaerica | exon |
| TCONS_00001393-exon-sc0000010-1575043694:959858..961402 | TCONS_00001393-exon-sc0000010-1575043694:959858..961402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:958156..961402 + |
Blast
The following BLAST results are available for this feature:
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