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TCONS_00001393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001393
Unique NameTCONS_00001393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001393 ID=TCONS_00001393|Name=TCONS_00001393|organism=Clytia hemisphaerica|type=transcript|length=1976bp
CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA
ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa
tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC
TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA
GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA
AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA
TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG
GTTGGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAA
ACGAGCAGCAAGTTTGATTACACTGGTGTTGGGCAAAGAAGAACAATTTG
GTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTT
CACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGT
GTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATG
CCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAA
GCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAA
AATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATAC
AAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAG
TGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCC
ATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgt
caataaatattttcaaacccTATTGGGACGTTTTTGATAAAAGTATATCA
CAATTGTGCTTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCATTCTT
TTATCTATTTACTctatttaaccctattcgtactggGGGATGGCTTCTTC
TGTTTAGCGGGGAAACAAATGCTTATAGCTCCTAACATGATAGATCTTTT
GGCAtgaatttctattttatttagcttcaaaataaaaaaaaattgacacg
cCTTGTCAGCATATTGTCATTTCTGAATGAAAGGTGTATGTTGTAAAAAT
TGACATATTTTCagtataaatttatttttcaaatcacatacacgcttttt
ttataagaatatcttctataagaatatcagggtgaaaattggccaaatcg
taagaataccctaaaaATACCCTCtaggttgaatttcaaaaaatttgata
agaatacagtcattttgtatttggctAACAGAAAAAACTGCATTTGTTAG
AGATAGAATGAAGCTTTaaggaagaaatgtaattttaacccaaatatTCA
CTCAAAGTCCAAAGTTTTCAAATTGATTATTTCTCAtgcttgttaaaagt
caagtctaaaaaagtaagaatactttaagaatatttcaccctcaactttg
gcactttcttaagaacatttgaccctcatccaaagtatactattcttata
aaaaaatgcgtGTATACTGTtcaaaccgtaatttattgaatatttaggat
aaaataaacttcgaacttttttctaaagcctttgtttcGTCCTTTGAGAG
AACAGAGGAAAGACTATCTTATATACTCTAATCTAACAAAAATGTCGTTT
GCTGACGGAATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGCTTTTC
CTTTTTCAGAGGAATGTATAtgctaaattttgactttgggtCATCTTTTT
GTTGAGGATATACTCCACTTTTTGCTACTTCACATGCGTACGCGTGCGCA
GAGAGTCAGACTATCGGGCTTTTATGTCGAttccagatgagatggagttt
ttataacatactttaataattggcca
Run BLAST on NCBI

transcript from alignment at sc0000010:958156..961402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001393 ID=TCONS_00001393|Name=TCONS_00001393|organism=Clytia hemisphaerica|type=transcript|length=3247bp|location=Sequence derived from alignment at sc0000010:958156..961402+ (Clytia hemisphaerica)
CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG GTTGGGTTTATTATGAGAAAAGTGAAGTAAGTTTATGCCACTGTGATATC TGCTGCTAAGCTAGACTCAATTCTTTTATGCTTTGGATGCAGGCTATGCC ACTAAAATGGAGTCCTTATACCCATAGTGAATCTTGTTTGATCGGTGATA AAtttagacaggagacccgtcctgtatttttataatctgatgtatacagg atgTTTACGACCTGTGAGacagatttctgcctcaaaaaatttacagtggg aaattcaaATTTAGCGCTGTcttcacttactaaaataaaaatcaaatttc ggaacttgtgctttctctaagaaagtgtgaccagtaaaagaataacaaaa tttgattggttatgttttcaaccgttattaggatctgggaaattcaaact ctcagcccataccatgctatatatttcgacatcagtatatagaataagaa atcatagcatgggtCTCCAGGCTACGATAAATTAGCCTCAAAACTTCACC TAATCGGTGACACAAGGGAAATCATCTTTGTTACATATACTTTTCAGTAG AGCAAAGACAAGGTGGgagcaaaatttgtgtaggagagcagaattttatg ataattataATGATTTTaggataattactgtgtcataaaaatctgcccTT CTACAGAGATTTCACGCCCCCCCCCTTGTCTACGCCACTGCTTTCTTTCT TTAGGACACTGAACCAATTGTAGCCAAAACGAGCAGCAAGTTTGATTACA CTGGTGTTGGTAAGTCTTATTTAATTTGATGTTGAAGTGAAGCTAAAATA CTCAAAGTGAAGCGTAAAATCTTTGATTAACTGTTTTGCTGTTTTCGTGC GGGGGAGGGGTACCAGGTACCAGATGATTTGACCAGATATGTGTTAGCGt tcgaaaatctttcaaataatttgaaaatctactcattctttaaaggtttt gtttttaagtaagagtgatatcatttgtttactcatcaattttaattcac aagcttttgcacattgaattgacacggatgtggagcaagattagtcaaaa agaggaaaagaaaaacatttttttgcttgtatcaAAATagtataacaata ggcagacactgtcctgatatgaaatatatgtgtctgatatgaaacgggag caCTTATGTAAAGATAAAAGGTTTGCGCTCAACATTGGTGGGTATATATT AGGGTATATATTAGTTTATAAACATCCTGTCGTACAAGAAGGTaaccagc cggcacacaacgttatttcaacgtccatataacgttagaagaacgttaaa acaacgttgtgtgccagctgggtaagaAATGTCTTTTCTCTACAGCGTTC AGGGCAAAGAAGAACAATTTGGTACACATCATTCCATTCATTGGCAAAGA ATTCACATTCGAATTCAACTTCACTTACTTCACTACTGACAGCTCTGTAG AATACTCGTGCGCTTTATTGTGTACAACGTTTTCTGCTTGGACGGAAAGA TATCCTGCTATTTGGATCATGCCAGGCGGATTAGTTCAATTTGAAGTGTC TTATGATGTTGAGCAAACTAAGCCAACTAAAACACTTATTGCAAAAAATA AGGTACGCGAACCAAACCAAAAATACAACATGCTGGTTTCATCAACTTAC GATTCTACCTCTGGAAAATACAAGTTCATTTTTAAAGTGGATGGAGTCAT AGAGACCTCTACCACAGTCAGTGACGTGCCAGAATTTCAGAATCTAAAAT GCTATGTCGGCGACCCTGGCCATACACCATCGTATGCCGTCATCGAAGAC TTCAAATTCAAACCGGAAGgtcaataaatattttcaaacccTATTGGGAC GTTTTTGATAAAAGTATATCACAATTGTGCTTAAATTCTGCGTCGCTTAT CGGGTTTGTTGGTGCATTCTTTTATCTATTTACTctatttaaccctattc gtactggGGGATGGCTTCTTCTGTTTAGCGGGGAAACAAATGCTTATAGC TCCTAACATGATAGATCTTTTGGCAtgaatttctattttatttagcttca aaataaaaaaaaattgacacgcCTTGTCAGCATATTGTCATTTCTGAATG AAAGGTGTATGTTGTAAAAATTGACATATTTTCagtataaatttattttt caaatcacatacacgctttttttataagaatatcttctataagaatatca gggtgaaaattggccaaatcgtaagaataccctaaaaATACCCTCtaggt tgaatttcaaaaaatttgataagaatacagtcattttgtatttggctAAC AGAAAAAACTGCATTTGTTAGAGATAGAATGAAGCTTTaaggaagaaatg taattttaacccaaatatTCACTCAAAGTCCAAAGTTTTCAAATTGATTA TTTCTCAtgcttgttaaaagtcaagtctaaaaaagtaagaatactttaag aatatttcaccctcaactttggcactttcttaagaacatttgaccctcat ccaaagtatactattcttataaaaaaatgcgtGTATACTGTtcaaaccgt aatttattgaatatttaggataaaataaacttcgaacttttttctaaagc ctttgtttcGTCCTTTGAGAGAACAGAGGAAAGACTATCTTATATACTCT AATCTAACAAAAATGTCGTTTGCTGACGGAATATCAATAGTCGCGTCTTC TTTAAGAAATATCTGCTTTTCCTTTTTCAGAGGAATGTATAtgctaaatt ttgactttgggtCATCTTTTTGTTGAGGATATACTCCACTTTTTGCTACT TCACATGCGTACGCGTGCGCAGAGAGTCAGACTATCGGGCTTTTATGTCG Attccagatgagatggagtttttataacatactttaataattggcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000738XLOC_000738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001393-exon-sc0000010-1491911889:958156..958531TCONS_00001393-exon-sc0000010-1491911889:958156..958531Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1510915933:958156..958531TCONS_00001393-exon-sc0000010-1510915933:958156..958531Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1575043694:958156..958531TCONS_00001393-exon-sc0000010-1575043694:958156..958531Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1491911889:959210..959264TCONS_00001393-exon-sc0000010-1491911889:959210..959264Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1510915933:959210..959264TCONS_00001393-exon-sc0000010-1510915933:959210..959264Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1575043694:959210..959264TCONS_00001393-exon-sc0000010-1575043694:959210..959264Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1491911889:959858..961402TCONS_00001393-exon-sc0000010-1491911889:959858..961402Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1510915933:959858..961402TCONS_00001393-exon-sc0000010-1510915933:959858..961402Clytia hemisphaericaexon
TCONS_00001393-exon-sc0000010-1575043694:959858..961402TCONS_00001393-exon-sc0000010-1575043694:959858..961402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:958156..961402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.135484 0 0.175437 0 0 0.56899 0 0 0 0 0.361342 0 0.399937 0.493502 0 0.371794 2.223 2.08004 0.428747 0.107397 0 0 0.938558 0.408071 1.19525e-06 0.0880124 0.0918987 0.124209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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