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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001393 ID=TCONS_00001393|Name=TCONS_00001393|organism=Clytia hemisphaerica|type=transcript|length=1976bp CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG GTTGGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAA ACGAGCAGCAAGTTTGATTACACTGGTGTTGGGCAAAGAAGAACAATTTG GTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTT CACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGT GTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATG CCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAA GCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAA AATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATAC AAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAG TGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCC ATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgt caataaatattttcaaacccTATTGGGACGTTTTTGATAAAAGTATATCA CAATTGTGCTTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCATTCTT TTATCTATTTACTctatttaaccctattcgtactggGGGATGGCTTCTTC TGTTTAGCGGGGAAACAAATGCTTATAGCTCCTAACATGATAGATCTTTT GGCAtgaatttctattttatttagcttcaaaataaaaaaaaattgacacg cCTTGTCAGCATATTGTCATTTCTGAATGAAAGGTGTATGTTGTAAAAAT TGACATATTTTCagtataaatttatttttcaaatcacatacacgcttttt ttataagaatatcttctataagaatatcagggtgaaaattggccaaatcg taagaataccctaaaaATACCCTCtaggttgaatttcaaaaaatttgata agaatacagtcattttgtatttggctAACAGAAAAAACTGCATTTGTTAG AGATAGAATGAAGCTTTaaggaagaaatgtaattttaacccaaatatTCA CTCAAAGTCCAAAGTTTTCAAATTGATTATTTCTCAtgcttgttaaaagt caagtctaaaaaagtaagaatactttaagaatatttcaccctcaactttg gcactttcttaagaacatttgaccctcatccaaagtatactattcttata aaaaaatgcgtGTATACTGTtcaaaccgtaatttattgaatatttaggat aaaataaacttcgaacttttttctaaagcctttgtttcGTCCTTTGAGAG AACAGAGGAAAGACTATCTTATATACTCTAATCTAACAAAAATGTCGTTT GCTGACGGAATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGCTTTTC CTTTTTCAGAGGAATGTATAtgctaaattttgactttgggtCATCTTTTT GTTGAGGATATACTCCACTTTTTGCTACTTCACATGCGTACGCGTGCGCA GAGAGTCAGACTATCGGGCTTTTATGTCGAttccagatgagatggagttt ttataacatactttaataattggcca Run BLAST on NCBI transcript from alignment at sc0000010:958156..961402+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001393 ID=TCONS_00001393|Name=TCONS_00001393|organism=Clytia hemisphaerica|type=transcript|length=3247bp|location=Sequence derived from alignment at sc0000010:958156..961402+ (Clytia hemisphaerica) CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA
ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa
tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC
TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA
GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA
AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA
TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG
GTTGGGTTTATTATGAGAAAAGTGAAGTAAGTTTATGCCACTGTGATATC
TGCTGCTAAGCTAGACTCAATTCTTTTATGCTTTGGATGCAGGCTATGCC
ACTAAAATGGAGTCCTTATACCCATAGTGAATCTTGTTTGATCGGTGATA
AAtttagacaggagacccgtcctgtatttttataatctgatgtatacagg
atgTTTACGACCTGTGAGacagatttctgcctcaaaaaatttacagtggg
aaattcaaATTTAGCGCTGTcttcacttactaaaataaaaatcaaatttc
ggaacttgtgctttctctaagaaagtgtgaccagtaaaagaataacaaaa
tttgattggttatgttttcaaccgttattaggatctgggaaattcaaact
ctcagcccataccatgctatatatttcgacatcagtatatagaataagaa
atcatagcatgggtCTCCAGGCTACGATAAATTAGCCTCAAAACTTCACC
TAATCGGTGACACAAGGGAAATCATCTTTGTTACATATACTTTTCAGTAG
AGCAAAGACAAGGTGGgagcaaaatttgtgtaggagagcagaattttatg
ataattataATGATTTTaggataattactgtgtcataaaaatctgcccTT
CTACAGAGATTTCACGCCCCCCCCCTTGTCTACGCCACTGCTTTCTTTCT
TTAGGACACTGAACCAATTGTAGCCAAAACGAGCAGCAAGTTTGATTACA
CTGGTGTTGGTAAGTCTTATTTAATTTGATGTTGAAGTGAAGCTAAAATA
CTCAAAGTGAAGCGTAAAATCTTTGATTAACTGTTTTGCTGTTTTCGTGC
GGGGGAGGGGTACCAGGTACCAGATGATTTGACCAGATATGTGTTAGCGt
tcgaaaatctttcaaataatttgaaaatctactcattctttaaaggtttt
gtttttaagtaagagtgatatcatttgtttactcatcaattttaattcac
aagcttttgcacattgaattgacacggatgtggagcaagattagtcaaaa
agaggaaaagaaaaacatttttttgcttgtatcaAAATagtataacaata
ggcagacactgtcctgatatgaaatatatgtgtctgatatgaaacgggag
caCTTATGTAAAGATAAAAGGTTTGCGCTCAACATTGGTGGGTATATATT
AGGGTATATATTAGTTTATAAACATCCTGTCGTACAAGAAGGTaaccagc
cggcacacaacgttatttcaacgtccatataacgttagaagaacgttaaa
acaacgttgtgtgccagctgggtaagaAATGTCTTTTCTCTACAGCGTTC
AGGGCAAAGAAGAACAATTTGGTACACATCATTCCATTCATTGGCAAAGA
ATTCACATTCGAATTCAACTTCACTTACTTCACTACTGACAGCTCTGTAG
AATACTCGTGCGCTTTATTGTGTACAACGTTTTCTGCTTGGACGGAAAGA
TATCCTGCTATTTGGATCATGCCAGGCGGATTAGTTCAATTTGAAGTGTC
TTATGATGTTGAGCAAACTAAGCCAACTAAAACACTTATTGCAAAAAATA
AGGTACGCGAACCAAACCAAAAATACAACATGCTGGTTTCATCAACTTAC
GATTCTACCTCTGGAAAATACAAGTTCATTTTTAAAGTGGATGGAGTCAT
AGAGACCTCTACCACAGTCAGTGACGTGCCAGAATTTCAGAATCTAAAAT
GCTATGTCGGCGACCCTGGCCATACACCATCGTATGCCGTCATCGAAGAC
TTCAAATTCAAACCGGAAGgtcaataaatattttcaaacccTATTGGGAC
GTTTTTGATAAAAGTATATCACAATTGTGCTTAAATTCTGCGTCGCTTAT
CGGGTTTGTTGGTGCATTCTTTTATCTATTTACTctatttaaccctattc
gtactggGGGATGGCTTCTTCTGTTTAGCGGGGAAACAAATGCTTATAGC
TCCTAACATGATAGATCTTTTGGCAtgaatttctattttatttagcttca
aaataaaaaaaaattgacacgcCTTGTCAGCATATTGTCATTTCTGAATG
AAAGGTGTATGTTGTAAAAATTGACATATTTTCagtataaatttattttt
caaatcacatacacgctttttttataagaatatcttctataagaatatca
gggtgaaaattggccaaatcgtaagaataccctaaaaATACCCTCtaggt
tgaatttcaaaaaatttgataagaatacagtcattttgtatttggctAAC
AGAAAAAACTGCATTTGTTAGAGATAGAATGAAGCTTTaaggaagaaatg
taattttaacccaaatatTCACTCAAAGTCCAAAGTTTTCAAATTGATTA
TTTCTCAtgcttgttaaaagtcaagtctaaaaaagtaagaatactttaag
aatatttcaccctcaactttggcactttcttaagaacatttgaccctcat
ccaaagtatactattcttataaaaaaatgcgtGTATACTGTtcaaaccgt
aatttattgaatatttaggataaaataaacttcgaacttttttctaaagc
ctttgtttcGTCCTTTGAGAGAACAGAGGAAAGACTATCTTATATACTCT
AATCTAACAAAAATGTCGTTTGCTGACGGAATATCAATAGTCGCGTCTTC
TTTAAGAAATATCTGCTTTTCCTTTTTCAGAGGAATGTATAtgctaaatt
ttgactttgggtCATCTTTTTGTTGAGGATATACTCCACTTTTTGCTACT
TCACATGCGTACGCGTGCGCAGAGAGTCAGACTATCGGGCTTTTATGTCG
Attccagatgagatggagtttttataacatactttaataattggcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001393-exon-sc0000010-1491911889:958156..958531 | TCONS_00001393-exon-sc0000010-1491911889:958156..958531 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1510915933:958156..958531 | TCONS_00001393-exon-sc0000010-1510915933:958156..958531 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1575043694:958156..958531 | TCONS_00001393-exon-sc0000010-1575043694:958156..958531 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1491911889:959210..959264 | TCONS_00001393-exon-sc0000010-1491911889:959210..959264 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1510915933:959210..959264 | TCONS_00001393-exon-sc0000010-1510915933:959210..959264 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1575043694:959210..959264 | TCONS_00001393-exon-sc0000010-1575043694:959210..959264 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1491911889:959858..961402 | TCONS_00001393-exon-sc0000010-1491911889:959858..961402 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1510915933:959858..961402 | TCONS_00001393-exon-sc0000010-1510915933:959858..961402 | Clytia hemisphaerica | exon |
TCONS_00001393-exon-sc0000010-1575043694:959858..961402 | TCONS_00001393-exon-sc0000010-1575043694:959858..961402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000010 | supercontig | sc0000010:958156..961402 + |
Blast
The following BLAST results are available for this feature:
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