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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001377 ID=TCONS_00001377|Name=TCONS_00001377|organism=Clytia hemisphaerica|type=transcript|length=899bp
AATTATTACAAGTCGCTCCACCGACCCAGGGTATTGCGAGGAACATGCAA
GatTGAGATAAACGGATTAATCGATGTGTCCTTTAATATCGGAAAATGTC
CTCATTATGGTCGCAACGCTAACGGTAATACTGGATGGATTTCCTCAACC
CGGATCTACATTGAAGAAATGAATGAACCACAACCAAAACAAGTCTGGGA
AAATGACGCTGCTTTGATTTGAATTCTTAGTTCAAAGGCggctttctgtt
tttttttcgtagcaccgtattacttcgaacaAACGCCCCGGGCAAGCAGA
GTCATTGTTTGGGTACCAAAAACCGAGCATGTATATGCTTATTCTTGACT
GATATACCGCNGTAGCAATTAGAgtcattgtttaggtaccaaaaaccgAG
CATGTATATGCTTATTCTTGACTGATATACCGCTCTACCGGTatggtata
gagcactttcttgaatcgcaagtcagatttgcaaatatatgcttataaac
aatatgcttataaaaaaacatgtttggTAAGTCCGAGTtgtttttggaca
attttaatGTTAGATTTTCTgtggaatttgaatttttagtatattttcaa
CACTAGGTATtccagtcaactctctctaattcggtAGTAATAATATTTGG
TAGTAAACACTGATTTTTGATGTTAAAACTTATTTCCATCCTCTCCTCCA
AGCTTCATCCCAAGCTTCAATGGTTGAGTCTGCAGCCATGTTTCCCCTTT
AGCCATTGAAATTAGGGGGGTTTGGGGAAAGGAAAGTGAGTACATGCAGT
GTTTTTTTAGGCtggtgccaatatattattgcACTGATTGTAGTAACAAT
GTGTTCttgatttgataaatttttgttttcattttcctgAAAGAAAATT Run BLAST on NCBI transcript from alignment at sc0000010:723436..725286+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001377 ID=TCONS_00001377|Name=TCONS_00001377|organism=Clytia hemisphaerica|type=transcript|length=1851bp|location=Sequence derived from alignment at sc0000010:723436..725286+ (Clytia hemisphaerica)
AATTATTACAAGTCGCTCCACCGACCCAGGGTATTGCGAGGAACATGCAA
GGTATTTGTTAACATACTGTATTTAAAGATTTGGccaaaatctgccaaat
ttaatCTTTCCCATCATCCGCCCAATTAAATCCCCTCTGAGAACATTTTT
AATATCGgccaaaattttttcctttaagATATGTCTTTCGTTGGAGCTCG
AGGtttaaatcaaaccaaataaTTGGGTTAGCATTTgcagaaatttaatt
aattCTAGTTTACTGCCCAGGCCTTTTAATtaacgagtttatgtatctac
acttttgaggacggcagagtgactgaagcgatttggagaaacccgcagtt
ctgacctgcAAAATCAAGGACgataaaagtgctgatttaccatcGTCCtt
agctggtcaggatctagtcaaattagaacttcgccgtctccgtcgcagaa
aaacacaccagcgagtttatgtatttgcacttttgaggacggtaaagtga
ctgaagcgatttggaataacccgcagttctgacccgcaaaatcgaggacg
gtaaaagtgcggatttaccgtcgtcttcagctggtcaggatctattcaaa
ttagaaccttaccgtctccgtcgctgaaaaacacacatacatNGGATTTA
atgtcgtcctcagctggtcatgatctagccaaattagaaccttaccgtct
ccgtcgctgaaaaacacacatacataaactcggtaccAAGACATTGCCCC
ATTGGctagtctgattcgcagacctatacttcctataagaaacttttttc
gctagaggatgagcagaagcctacccATTGACTGACTttcaaaatctgat
ttttttccGGTTGGACAATTATCTTACTCTCCTCAGGGATGTTTTTTTCC
GTGGATTATTGTCCTAGAATCACCCTGCAACCACCCCTCCCCCAACAGAT
GGGACGAAAATTAATATAACATGGATTTCGACGgctctttctcttttttt
cagatTGAGATAAACGGATTAATCGATGTGTCCTTTAATATCGGAAAATG
TCCTCATTATGGTCGCAACGCTAACGGTAATACTGGATGGATTTCCTCAA
CCCGGATCTACATTGAAGAAATGAATGAACCACAACCAAAACAAGTCTGG
GAAAATGACGCTGCTTTGATTTGAATTCTTAGTTCAAAGGCggctttctg
tttttttttcgtagcaccgtattacttcgaacaAACGCCCCGGGCAAGCA
GAGTCATTGTTTGGGTACCAAAAACCGAGCATGTATATGCTTATTCTTGA
CTGATATACCGCNGTAGCAATTAGAgtcattgtttaggtaccaaaaaccg
AGCATGTATATGCTTATTCTTGACTGATATACCGCTCTACCGGTatggta
tagagcactttcttgaatcgcaagtcagatttgcaaatatatgcttataa
acaatatgcttataaaaaaacatgtttggTAAGTCCGAGTtgtttttgga
caattttaatGTTAGATTTTCTgtggaatttgaatttttagtatattttc
aaCACTAGGTATtccagtcaactctctctaattcggtAGTAATAATATTT
GGTAGTAAACACTGATTTTTGATGTTAAAACTTATTTCCATCCTCTCCTC
CAAGCTTCATCCCAAGCTTCAATGGTTGAGTCTGCAGCCATGTTTCCCCT
TTAGCCATTGAAATTAGGGGGGTTTGGGGAAAGGAAAGTGAGTACATGCA
GTGTTTTTTTAGGCtggtgccaatatattattgcACTGATTGTAGTAACA
ATGTGTTCttgatttgataaatttttgttttcattttcctgAAAGAAAAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001377-exon-sc0000010-1491911889:723436..723486 | TCONS_00001377-exon-sc0000010-1491911889:723436..723486 | Clytia hemisphaerica | exon |
| TCONS_00001377-exon-sc0000010-1510915933:723436..723486 | TCONS_00001377-exon-sc0000010-1510915933:723436..723486 | Clytia hemisphaerica | exon |
| TCONS_00001377-exon-sc0000010-1575043694:723436..723486 | TCONS_00001377-exon-sc0000010-1575043694:723436..723486 | Clytia hemisphaerica | exon |
| TCONS_00001377-exon-sc0000010-1491911889:724439..725286 | TCONS_00001377-exon-sc0000010-1491911889:724439..725286 | Clytia hemisphaerica | exon |
| TCONS_00001377-exon-sc0000010-1510915933:724439..725286 | TCONS_00001377-exon-sc0000010-1510915933:724439..725286 | Clytia hemisphaerica | exon |
| TCONS_00001377-exon-sc0000010-1575043694:724439..725286 | TCONS_00001377-exon-sc0000010-1575043694:724439..725286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:723436..725286 + |
Blast
The following BLAST results are available for this feature:
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