TCONS_00001375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001375
Unique NameTCONS_00001375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001375 ID=TCONS_00001375|Name=TCONS_00001375|organism=Clytia hemisphaerica|type=transcript|length=1410bp
GTAATTTATATTTAGGACTTTGAGAAATTTATCAACAACGTTTTGTTTGT
ACAAAGGCCTTATGGTCAACCTGAATGTTTATTTTAAGtcaatatcaaaa
cattttgcaCCAGTGTATCTttgtacaataaaaacatctaaGGTTCCTTG
TTACGAAACGTTGTTTTGCTATATCATCAGCCATAGAACGAACTCTAACA
AAATATGGAAAAAGACCTGAAAACCAAAGGATTTTGTATCGTCAAAGACA
TCTTCACACATGAAGAAATTAATATTTTGAAGTCCAAATATGATATTTGT
GAACAAGAGGTCCATCGTATTTGCCAAGAGAACCCGTCAGAGCCATACGA
TTTCGTTCAGCTGTTTGATAAAGAAACCATCGTTAAAATGAAATCATATT
GTGATAGCTCCATCATTGAAACAGCTAAAGGAAGATATGATGTCCGGATA
CAGACAGTGAAAGATCAATTCAAAGCATTGCCAGAGAAACCAGAGATAGC
CGATTTGATCAAAACATGTTTACAGAGAAGATATGTATGCGACATTGGAA
TTTTGCTAACAAATTCACATTCCAATAATGGCCCTTGGCATCGTGATACC
TATAATTTGAATGGTCCTTCAAACGAAGATGGGTCGTATGACGATTCGCT
GGTCACTCAGTTGAATCCGTTCTATTACACATGCCTCATCCCCTTAGATG
ATATCACCAGTgaaaacggacagacagaatTCATGGAAGGTTCGCATCGT
TTAACATATGAACGAGCGAAAGACGTGAATCGAGTGAAAAATGAATTGAA
AGCAGGATCAGTTGTTTTGTTTGATGGACGCATGTTTCATCGAGCATGCG
CACATCCTTCTAATAAACCACGCCGTTTGATTTATCTTGTTTTTCATAGA
GATTGGTATGTCGATGTATAATTACAGAATTTGAAAATTGCTGATCAAAT
AGAGTTAAAGGACATCTTTTAACACACCATCTACCATTTGCATACACATC
ATCACTTTAAACAACTTTCTTCAACTCCAACACCGCGCGagcataaattt
gaaaattttattttgttaattctACTTTTTCAGCATAAATGCCttgtacc
ttaaaggaagaaattttggcggaaagaaaatttggcggatttgacttaag
ttcccgccaaaatttattttttccgccatccgccaaattaaattcccgcc
aaattaaacattttgaaaatatgatctcttaaggtgtttttgcttatttt
ttcgctgttttgacgccatcttaaggttaaatctTTGGtgttttagctat
tttttcgctgttttgacgccatcttaaggttaaatttttaagcaaccgcc
aaatttagttttttcgtccatccgccaaattaaattcccgccaaaatttc
ttcctttaag
Run BLAST on NCBI

transcript from alignment at sc0000010:710717..712126+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001375 ID=TCONS_00001375|Name=TCONS_00001375|organism=Clytia hemisphaerica|type=transcript|length=1410bp|location=Sequence derived from alignment at sc0000010:710717..712126+ (Clytia hemisphaerica)
GTAATTTATATTTAGGACTTTGAGAAATTTATCAACAACGTTTTGTTTGT ACAAAGGCCTTATGGTCAACCTGAATGTTTATTTTAAGtcaatatcaaaa cattttgcaCCAGTGTATCTttgtacaataaaaacatctaaGGTTCCTTG TTACGAAACGTTGTTTTGCTATATCATCAGCCATAGAACGAACTCTAACA AAATATGGAAAAAGACCTGAAAACCAAAGGATTTTGTATCGTCAAAGACA TCTTCACACATGAAGAAATTAATATTTTGAAGTCCAAATATGATATTTGT GAACAAGAGGTCCATCGTATTTGCCAAGAGAACCCGTCAGAGCCATACGA TTTCGTTCAGCTGTTTGATAAAGAAACCATCGTTAAAATGAAATCATATT GTGATAGCTCCATCATTGAAACAGCTAAAGGAAGATATGATGTCCGGATA CAGACAGTGAAAGATCAATTCAAAGCATTGCCAGAGAAACCAGAGATAGC CGATTTGATCAAAACATGTTTACAGAGAAGATATGTATGCGACATTGGAA TTTTGCTAACAAATTCACATTCCAATAATGGCCCTTGGCATCGTGATACC TATAATTTGAATGGTCCTTCAAACGAAGATGGGTCGTATGACGATTCGCT GGTCACTCAGTTGAATCCGTTCTATTACACATGCCTCATCCCCTTAGATG ATATCACCAGTgaaaacggacagacagaatTCATGGAAGGTTCGCATCGT TTAACATATGAACGAGCGAAAGACGTGAATCGAGTGAAAAATGAATTGAA AGCAGGATCAGTTGTTTTGTTTGATGGACGCATGTTTCATCGAGCATGCG CACATCCTTCTAATAAACCACGCCGTTTGATTTATCTTGTTTTTCATAGA GATTGGTATGTCGATGTATAATTACAGAATTTGAAAATTGCTGATCAAAT AGAGTTAAAGGACATCTTTTAACACACCATCTACCATTTGCATACACATC ATCACTTTAAACAACTTTCTTCAACTCCAACACCGCGCGagcataaattt gaaaattttattttgttaattctACTTTTTCAGCATAAATGCCttgtacc ttaaaggaagaaattttggcggaaagaaaatttggcggatttgacttaag ttcccgccaaaatttattttttccgccatccgccaaattaaattcccgcc aaattaaacattttgaaaatatgatctcttaaggtgtttttgcttatttt ttcgctgttttgacgccatcttaaggttaaatctTTGGtgttttagctat tttttcgctgttttgacgccatcttaaggttaaatttttaagcaaccgcc aaatttagttttttcgtccatccgccaaattaaattcccgccaaaatttc ttcctttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000733XLOC_000733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001375-exon-sc0000010-1491911889:710717..712126TCONS_00001375-exon-sc0000010-1491911889:710717..712126Clytia hemisphaericaexon
TCONS_00001375-exon-sc0000010-1510915933:710717..712126TCONS_00001375-exon-sc0000010-1510915933:710717..712126Clytia hemisphaericaexon
TCONS_00001375-exon-sc0000010-1575043694:710717..712126TCONS_00001375-exon-sc0000010-1575043694:710717..712126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:710717..712126 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314247 0.468888 0.451446 0.423689 1.01584 0.588365 0.563436 0.97359 0.223827 0.245903 0.225277 0.193374 51.3244 49.6248 40.7737 43.9429 5.15392 5.30911 63.6945 48.3106 5.25355 4.97723 0 0.271636 0.389432 0.521023 0.44753 0.463765 0.573742 0.557007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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