TCONS_00001363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001363
Unique NameTCONS_00001363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001363 ID=TCONS_00001363|Name=TCONS_00001363|organism=Clytia hemisphaerica|type=transcript|length=1640bp
CgaatcttcaaaactactttactTGTAAACCGCGAGGGAGACAATTTAAA
ACGTGCATCATTCAACGAAAACGGCAACTAAGTTTTCAAGAGAAACTGTT
GTTAGAAGCTGAGCTGTTTAAACCAAGGTGAGCTATGCCTCGAAGAAGGA
CTGCTGTCTTTCCCGTAAACGGTCAAGGGACTCTAGTCTATACCGTTCGT
AAGAAGAGTCAATTCACCATCTACATAACACCTGACAAACAAAAGGTACC
AAAAAGCTTAGATTTCGATAGTGAATTCTCAGAGTTTGAAGAGGAGCAAA
GTTTTGATACGGAGAACTACATCTCGTTGACTGTTGGTGAGAATTTTGCA
CGTTTCAAACTGAAGATGCATAAAGATGGTGAAGAGAGAGTGTTGAAAGA
AGAATATGGGAAGAATATTGGAATTGAACCCAAAGAACTGGTCAGTTATT
GGTTCAGTTATGACCGCGATGCACTGACCTTGAAATACGGCAAAGGGCAC
GTTATGACTCAAACAACACTATTAGAGTTCCCTTTCTTGGAAGGCAAATC
GAAAGGCGAAGAAGAGCACATTCGAAAGAAGTACAATATTTTCTTCAATG
CAGaAGAGAAAAAATACGTGGTTGCCGAATCGGAGAAAATGGTGGAGGAC
GTGACAGGAGGACTGGTCAAAATCGAACAGACGTTACAATTCTATCCCAA
CCCTCTCGTGACTAATTTCTCACCTATCGTTAAAGATAGCTCGAAAGTCA
CTTTGTTCGATCTTGATCGAGATCAATTCATGTTTTCAAGTAGCCTACCA
CCTGCCTGTAAAGAACTCTACGATAATATCAAAGGTCTTCAACTGGAGTT
TCCAGAAGATCCTATTACGAAACTTTCAGACGCCATACGGTACAGCATCA
ACACACCTGGAATGACTTTAtatgaaaagttgaaagaaaaggaagaacAG
TTTGCTTACCTACGTGTAACACTTGGGCCTGACCGCCGTACCGCACCTGG
TATTCCCTATGTTCTAGAGATCTGGCCTTCAGGAAAAGGAAGCCCTATCC
ATAATCATGGAGGAGCATGTGCAATAATTAAAGTGCTATTTGGTAGAATC
ACTTGCAACATCTACAACAAGATCACACAGCCACCGGAACAAACAGAAAT
GCAACCTTTGACCAGATTTGATCTCAATGAAGAGCAAATGACCTGGATAG
GCCCCAACTGGTATCAAACGCATCGCTTACACAACAACACTGATGATTTC
TGCGCAACCATACAATGCTATCGATATGACTTCAATGATGCAATTCACTG
GCCCAATTTCGATTATGTGGGTTTTGTAGAAGACAAAGAAAAATACGAGT
TGGAAGAATTCTATCCAGATAGCGATTTCACGTTCGTTAATTTGAGACGA
ACTGTTCTTGACGAGtttcaaaaattcttagaaGGATGAGTTATGATTTT
AACTTTCCTGCAAAGATTGCAGTGCTTTcaagtaaataaatattttgtta
gCGTTTTTTTTTCACAGTAAACAGTAAACCATGTTACATTTTAAAACGTT
ATACTGTTGAACCCCCATGTAATTTGTATTTAATAAATTGAAAGACCTAT
GTGTGAATCGAAAAAAAACTTGATAATTTCacaattaaaa
Run BLAST on NCBI

transcript from alignment at sc0000010:600456..604106+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001363 ID=TCONS_00001363|Name=TCONS_00001363|organism=Clytia hemisphaerica|type=transcript|length=3651bp|location=Sequence derived from alignment at sc0000010:600456..604106+ (Clytia hemisphaerica)
CgaatcttcaaaactactttactTGTAAACCGCGAGGGAGACAATTTAAA
ACGTGCATCATTCAACGAAAACGGCAACTAAGTTTTCAAGAGAAACTGTT
GTTAGAAGCTGAGCTGTTTAAACCAAGGTGAGCTATGCCTCGAAGAAGGA
CTGCTGTCTTTCCCGTAAACGGTCAAGGGACTCTAGTCTATACCGTTCGT
AAGAAGAGTCAATTCACCATCTACATAACACCTGACAAACAAAAGGTACC
AAAAAGCTTAGATTTCGATAGTGAATTCTCAGAGTTTGAAGAGGAGCAAA
GTTTTGATACGGAGAACTACATCTCGTTGACTGTTGGTGAGAATTTTGCA
CGTTTCAAACTGAAGATGCATAAAGATGGTGAAGAGAGAGTGTTGAAAGA
AGAATATGGGAAGAATATTGGAATTGAACCCAAAGAACTGGTAAGCTGTA
CTAATCACATCGTCTTATCTTTCGTCTAGACTTTCTCAGTCTGGTTACGT
TACGTAGTTGTACTTCTATTGTTTTTACAGCTATATATCCTGTCCTATAC
GTAGCGTTCTTAAAGCTCGTGATTTTTCTTTAACGTTGGAATTTGTTTTT
GGTTTTAGGTCAGTTATTGGTTCAGTTATGACCGCGATGCACTGACCTTG
AAATACGGCAAAGGGCACGTTATGACTCAAACAACACTATTAGAGTTCCC
TTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAGCACATTCGAAAGAAGT
ACAATATTTTCTTCAATGCAGGTTAGACTTTGAAGTCGCTAATATTCTCA
ATcgacttttgttttttttccctTGGTTATCAACTTCAACTAAGTTTGGG
TATaaatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctg
tctgtctgtctgtctgtctgtcttaCAATATTGTCACCGGATTTGTCGTT
TTATTGGATTTCTCTCATATAATGTGTATGTCGGATGGAAATGGTTATTT
AGGTGTGTGACATTGGGTTGATGGATGTTTACTAATTGGCAGTTTTTACA
CTAGGCTTGGATAGTGTTagttttttcttttggaaaggtgGGTTTTGGCT
TTTATCAACAGTTCTGTATTGTTTTCTTCGTGTCTCTCTGTCTGTCTGTC
CGTCCGAAGATTTATGGGTTGACCAATTTTCTTACCATTTGAGGCTAGGT
TCGAATTattaattttatatttatttttctagaAGAGAAAAAATACGTGG
TTGCCGAATCGGAGAAAATGGTGGAGGACGTGACAGGAGGACTGGTCAAA
ATCGAACAGACGTTACAATTCTATCCCAACCCTCTCGTGACTAATTTCTC
ACCTATCGTTAAAGATAGCTCGAAAGTCACTTTGTTCGATCTTGATCGAG
ATCAATTCATGTTTTCAAGTAGCCTACCACCTGCCTGTAAAGAACTCTAC
GATAATATCAAAGGTACGTCTAGTTAATTTCATAACAGATCATCTATTCT
GCTCCTAAAGGGATTTGGCAAATGTGCCGATCTAACTTGGTTGTCTGTCA
AAACAATTAAAACTACGTTGCTTTTTGGTTTTAATGATTATAAGATTGAC
ATATGATTTTGGTGTGATTGCTTTGCTTTAGCCAATAACTGCGCACAAAA
TCTCATTCCGCAAACATGAGCAAATTATTTTATGGAACCATGCCCTTTAG
AGTGAATACTTGCCATGCCATGCGTTGAGTAGTAGAATCTGCTCAGAGAC
TAATGTCTAGTTGACCTCTAATTTCTAACGTATTTTGATGGTCTAAAATA
GACGTTACTGCTTAGAAAAATAGCCTTGACGTTTTAAATATAGGCAAGTT
ATTCATCAGTAGTCATTATCATCTGCNGTTGATCTCtaatttctaatatt
tttttggtTCATGGTCTAGAATAGACGTTACTACTTAAAAAATCATTATC
GTCTACAGGTCTTCAACTGGAGTTTCCAGAAGATCCTATTACGAAACTTT
CAGACGCCATACGGTACAGCATCAACACACCTGGAATGACTTTAtatgaa
aagttgaaagaaaaggaagaacAGTTTGCTTACCTACGTGTAACACTTGG
GCCTGACCGCCGTACCGCACCTGGTATTCCCTATGTTCTAGAGATCTGGC
CTTCAGGTAAGGAGATTTGATTATGTCCGGCATTGACTAGTTTACTGTag
tattaccttaagggaattaattttcgcgggacttattttcACGACTAACT
TCGACTgtaaattttcgcgaggatttaatttcgcgaattgacgaattttt
tcagattttcagatttttccttAGTTTGATTACGAGATTTTGTGTGTTTA
GTAGAGTCTTATATCTTCATAactgaataaaaatttattcgaattacaga
gacatTCGAGAGTCATTTAAGAGAGTTTCCATTAGATCAAAAAACTTAGA
ATTTTTAgcgtaaaaaaattaattttcgagaggatcaaattttgcgaatt
tagCGAGAGAtgagagtttgaaaattttcgcgagagattatatttcgcga
aaaagttgaaattcgcgaaaattcgcgaaatataatccccgcgaaaattt
attcccttaaggtaccatgtttgtaatttttgatagaAAGATCGGGGACC
GCCATAGAGCTTGGTGTATGTGGTTTATACTATGATTTTCATTACATGGT
ATAATTATTTTGATGTATCCCTCTAACAACCCTAACTCCACAATGGGATT
TGGTTTAGGCCTACCAGGGTCCAATGTCTGTCTTTGTGAGCACGTTAAAT
GTACTATGTACCAGTGTATCTCTCGCAGTACCTCTAcggcaataaatttt
gaaattagccgtagatatcgggtctgtaTTTAGACTAATGTTAACGCAAT
TACACCAGACATTACAAGTCAATTCTGCCATGCACTTTTTCAAATTATAC
GCTCAtatgttttcttcttttatattaCTAATTGCGAAATTAGCATGATC
AGGGAATTGTCCAGGGTTGATGAATCTATATTTTCTTTCTCAGGAAAAGG
AAGCCCTATCCATAATCATGGAGGAGCATGTGCAATAATTAAAGTGCTAT
TTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCACCGGAA
CAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGAGCAAAT
GACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACAACAACA
CTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTCAATGAT
GCAATTCACTGGCCCAATTTCGATTATGTGGGTTTTGTAGAAGACAAAGA
AAAATACGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGTTCGTTA
ATTTGAGACGAACTGTTCTTGACGAGtttcaaaaattcttagaaGGATGA
GTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGCTTTcaagtaaataa
atattttgttagCGTTTTTTTTTCACAGTAAACAGTAAACCATGTTACAT
TTTAAAACGTTATACTGTTGAACCCCCATGTAATTTGTATTTAATAAATT
GAAAGACCTATGTGTGAATCGAAAAAAAACTTGATAATTTCacaattaaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000729XLOC_000729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001363-exon-sc0000010-1491911889:600456..600895TCONS_00001363-exon-sc0000010-1491911889:600456..600895Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1510915933:600456..600895TCONS_00001363-exon-sc0000010-1510915933:600456..600895Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1575043694:600456..600895TCONS_00001363-exon-sc0000010-1575043694:600456..600895Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1491911889:601064..601226TCONS_00001363-exon-sc0000010-1491911889:601064..601226Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1510915933:601064..601226TCONS_00001363-exon-sc0000010-1510915933:601064..601226Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1575043694:601064..601226TCONS_00001363-exon-sc0000010-1575043694:601064..601226Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1491911889:601688..601918TCONS_00001363-exon-sc0000010-1491911889:601688..601918Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1510915933:601688..601918TCONS_00001363-exon-sc0000010-1510915933:601688..601918Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1575043694:601688..601918TCONS_00001363-exon-sc0000010-1575043694:601688..601918Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1491911889:602414..602611TCONS_00001363-exon-sc0000010-1491911889:602414..602611Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1510915933:602414..602611TCONS_00001363-exon-sc0000010-1510915933:602414..602611Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1575043694:602414..602611TCONS_00001363-exon-sc0000010-1575043694:602414..602611Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1491911889:603499..604106TCONS_00001363-exon-sc0000010-1491911889:603499..604106Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1510915933:603499..604106TCONS_00001363-exon-sc0000010-1510915933:603499..604106Clytia hemisphaericaexon
TCONS_00001363-exon-sc0000010-1575043694:603499..604106TCONS_00001363-exon-sc0000010-1575043694:603499..604106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:600456..604106 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200675	0.332575	0.240835	0.350167	0.214861	0	0.313502	1.02432	10.1039	28.8426	2.56491	2.5181	5.11558	3.23592	14.3419	1.42295	29.1754	24.8956	41.7397	64.4017	2.01969	1.85643	10.0774	19.0457	56.1734	232.771	51.3204	91.5077	121.536	64.3962
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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