TCONS_00001360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001360
Unique NameTCONS_00001360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001360 ID=TCONS_00001360|Name=TCONS_00001360|organism=Clytia hemisphaerica|type=transcript|length=1192bp
TTATTGGTTTAGTTACGACCGCGATGCACTGACCTTGAAATACGGCAAAG
GGCACGTTATGACTCAAACAACACTGTTAGAATTCCCTTTCTTGGAAGGC
AAATCGAAAGGCGAAGAAGAACACATCCGAAAGAAGTACAATATTTTCTT
CAACGCAGAGAGAAAATACGTGGTTACCGAATCAGAGAAAATAATGGAGG
ACGTGACAGGAGGACTGGTCAAAATCGAACAGACGTTACAATTCTATTCC
AACCCTCTCGTGACTAATTTCTCACCTATCGTTAAAGATAGTTCGAAAGT
CACTTTGCTTGATCTTGATCGAGATCAATTCATGTTTTCCAGTAGTCTAC
CACCTGCCTGTAAAGAACTCTACGATAATATCAAAGGTCTTCAACTGGAG
TTTCCAGAAGATCCTATTACGAAACTTTCAGACGCCATACGGTACAGCAT
CAACACACCTGGAATGACTTTAtatgaaaagttgaaagaaaaggaagaac
AGTTTGCTTACCTACGTGTAACACTTGGGCCTGACCGCCGTACCGCACCT
GGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGGAAAAGGAAGCCCTAT
CCATAATCATGGAGGAGCATGTGCAATAATTAAAGTGCTATTTGGTAGAA
TCACTTGCAACATCTACAACAAGATCACACAGCCACCGGAACAAACAGAA
ATGCAACCTTTGACCAGATTTGATCTCAATGAAGAGCAAATGACCTGGAT
AGGCCCCAACTGGTATCAAACGCATCGCTTACACAACAACACTGATGATT
TCTGCGCAACCATACAATGCTATCGATATGACTTCAATGATGCAATTCAC
TGGCCCAATTTCGATTATGTGGGTTTTGTAGAAGACAAAGAAAAATACGA
GTTGGAAGAATTCTATCCAGATAGCGATTTCACGTTCGTTAATTTGAGAC
GAACTGTTCTTGACGAGtttcaaaaattcttagaaGGATGAGTTATGATT
TTAACTTTCCTGCAAAGATTGCAGTGCTTTcaagtaaataaatattttgt
tagCGTTTTTTTTTCACAGTAAACAGTAAACCATGTTACATTTTAAAACG
TTATACTGTTGAACCCCCATGTAATTTGTATTTAATAAATTGAAAGACCT
ATGTGTGAATCGAAAAAAAACTTGATAATTTCacaattaaaa
Run BLAST on NCBI

transcript from alignment at sc0000010:597029..604106+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001360 ID=TCONS_00001360|Name=TCONS_00001360|organism=Clytia hemisphaerica|type=transcript|length=7078bp|location=Sequence derived from alignment at sc0000010:597029..604106+ (Clytia hemisphaerica)
TTATTGGTTTAGTTACGACCGCGATGCACTGACCTTGAAATACGGCAAAG
GGCACGTTATGACTCAAACAACACTGTTAGAATTCCCTTTCTTGGAAGGC
AAATCGAAAGGCGAAGAAGAACACATCCGAAAGAAGTACAATATTTTCTT
CAACGCAGGTTAGATTTCGAACTCACCAATAATATTATCAATCAACTTTT
GTCTACTTtgttaaaaagtttattttaagTCTGTCCGTCTGTCTACCTGT
ATGTCTGTATGCCCGAGAAAacctttgactttttttttacaaatcgACAC
TGAGTTCGAAttattgattttgtattttaatttttcttgaaGAGAGAAAA
TACGTGGTTACCGAATCAGAGAAAATAATGGAGGACGTGACAGGAGGACT
GGTCAAAATCGAACAGACGTTACAATTCTATTCCAACCCTCTCGTGACTA
ATTTCTCACCTATCGTTAAAGATAGTTCGAAAGTCACTTTGCTTGATCTT
GATCGAGATCAATTCATGTTTTCCAGTAGTCTACCACCTGCCTGTAAAGA
ACTCTACGATAATATTAAAGGTATATCTAGTTGACTTCCAATGTCTAATT
TTTTGTGGTCTTTAGTTTCCTAATAAATAATACCATACCAGAACCCATAG
TATAATTAATGTATATCGTGCTGCTCATGCTCTGTCTTTATCAAACTGCA
ATCACCGCATGTCAAATCTTGTTGTCGAATATGTCGTTTGCTCTTCTCTC
GTTTTAAAGGCCagagtaagtaagtaagtctaaGACCGCAGTCAGAAGTC
TGAAGGCTTCTTTCGACAGCTATTACCCAAAGGTAAAAAGGGTGGGCGCC
AATTTTTACTCCCTGGACTGCTGCACTtatccttgatccttctcttaatt
gctgagcatcaaacaaagaagcatcaagtaccattttgggaatctttggt
attaCCCGCTTGGGGTGGAACCCACAACCtagcgaaccgtagccggaagc
tctaccactgcactacggtcgctgaaGGCCATAGgtataaatactttttg
gaaattaGAAATCATTGTCTTCTGCAGGTCTCCAACTGGAGTTTCCAGAA
GATCCTATTACGAAACTTTCAGACGCCATACGGTACAGCATCAACACACC
TGGAATGACTTTAtacgaaaagttgaaagaaaaggaagaacAGTTTGCTT
ACCTACGTGTAACACTCGGTCCTGACCGCCGNAGCCGGaagctctaccac
tgcactacggtcgctgaaGGCCATAGgtataaatactttttggaaatttg
aaatcatTATCGTCTACCGCGCCTGGTATTCCCTATGTTCTAGAGATCTG
GCCTTCAGGTAAGGAGATGGTTCAGTGCAGCTCGCTTTGGCAAGTTAACC
GTAGTGGTAGTAACATGTTTTCAATATTTAAGAGGGAGATCATGAATCGC
ATTACTCGTTGATGTGTCTTGATGTATACCGGATGGTCCAAAGAAAGTTT
ccataaattcaaaatttatgattttcatCACAAAGTGTTAGAACAACTAT
CCACCGCACAAACAGATAGGGTTGATTCTACCAGCGTCGATGAAtatcaa
tttctgaaaattttccgATAGAGTGACTTCAGACATCGGTGGTCTCTCGC
CCCTGGGAAACTATAACTATACTATAAAAGTAACTTAATTCNACTTTTTC
AGATTATACGCTCAtatgttttcttcttttatattaCTAACTGCGAAATA
AATTAGCATGGTCAGGGGATTGTCCAGGGTTGATGAATCTATATTTGCTT
TCTTTCTCAGGAAAAGGAAGCCCTATCCATAATCATGGAGGAGCATGCGC
TATCATTAAAGTGCTATTTGGTAGAATCACTTGCAACATCTACAACAAGA
TCACACAGCCACCAGAACAAACAGAAATGCAACCTTTGACCAGATTTGAT
CTCAATGAAGAGCAAATGACCTGGATAGGCCCCAACTGGTATCAAACGCA
TCGCTTACACAATAACACTGATGATTTCTGCGCAACCATACAATGCTATC
GATATGACTTCAATGATGCAATTCGCTGCCCAAATTTCCATTATGTGGGT
TTTGTAGAAGGCAAAGAAAAATATGAGTTGGAAGAATTCTATCCAGATAG
CGATTTCACGTTCGTTAATTTGAGACGAACTGTTCTTGACGAGTATCAAA
AATTCTTGGAAGGCTGAGTagtgattttgattttattttttttctgtaaa
agtgttgtttttaatcaaattttatttaGCCCTCTTAGCCGAGGGTAATC
TAAAAGATATTTTAGAGCTTCTACagtttaaccctatttttatcagtgGG
GGTGTTTTCCATCAGCCTGGCATTTATTTGCTAATAGCTTTGTATTTGTC
TGATACTTTCGTACACAAGTCGTTTCTTTTGTCAGTAATGAGTTGTGGTA
GCGAACCCCAAATGAACTTTCTGGTGCGAACCCTGAAACAAGATTTTGAC
AAGATAGTCTACCTGCAGGCTTTTATTGGCACGGCCAGTAAAAGAGTCGC
GGTATTTCAGCACGGTAAAATAAAAAGACGCAATTGTTAAAGAGTTAACG
ACTTAAAAGTATCAAAGAGTTGGACAATAAAAGGCTAtttcatatttaaa
aaaaaatcaaatttgtttaaTACCGATTTAGTTGTATGAAAAGAGATTCT
CGAAAAACATTATCAGTGATTCGACAAAACATACTTTCACCGAAGTTTCT
TTTAAGATAATCCTATAGAGTCTGTGTAAAACATGATAAGGCAAGTGGGT
AAAACGATATGAACCTTTTGTCGGGAGATGATGATTCGTATGACAATCTC
GTAATTAGGAACTTATAGTATTTTTATAGACTTAAAAAAGCTTTGTTAGT
TCTATGTTGTTTTAATGATCTTTGATGTTTAGTAAattcaaacaaacaaa
cgaAAATACTAGTAAGGAAATAATTCTCGTTCCAACACaatcttacacgt
ttttttataagaacaaactatataagaacataaggcttcgatgaccaaaa
tgttaagaataagttaagaacattttaaggcttcgcggactcaaAAACAG
CCAATtacttaggaaaatggacaaaaatacataaaaattgggggaaaata
agaacatgttaaggacattttgaaactcaaaaagttaagaacatctgaag
gcttcaaaaaatttggatgttcttataaaaaaacgtgtatctgtttgaaa
gaaaattagtttaCTGGTAATAGACAAGCTCCTCTTCTTTCCTAGAAAGG
TGTTTTACATTCTGcgaaaaaaaaaacctaaaaGTTTTTGCTGACTCAAA
CAGTGATTTGAATCTGTGACTATCTTGTGACTATCAGCCTCTTTCCAATC
CTTTATATAAAGCCGCCATAATGTGTACgaatcttcaaaactactttact
TGTAAACCGCGAGGGAGACAATTTAAAACGTGCATCATTCAACGAAAACG
GCAACTAAGTTTTCAAGAGAAACTGTTGTTAGAAGCTGAGCTGTTTAAAC
CAAGGTGAGCTATGCCTCGAAGAAGGACTGCTGTCTTTCCCGTAAACGGT
CAAGGGACTCTAGTCTATACCGTTCGTAAGAAGAGTCAATTCACCATCTA
CATAACACCTGACAAACAAAAGGTACCAAAAAGCTTAGATTTCGATAGTG
AATTCTCAGAGTTTGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATC
TCGTTGACTGTTGGTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAA
AGATGGTGAAGAGAGAGTGTTGAAAGAAGAATATGGGAAGAATATTGGAA
TTGAACCCAAAGAACTGGTAAGCTGTACTAATCACATCGTCTTATCTTTC
GTCTAGACTTTCTCAGTCTGGTTACGTTACGTAGTTGTACTTCTATTGTT
TTTACAGCTATATATCCTGTCCTATACGTAGCGTTCTTAAAGCTCGTGAT
TTTTCTTTAACGTTGGAATTTGTTTTTGGTTTTAGGTCAGTTATTGGTTC
AGTTATGACCGCGATGCACTGACCTTGAAATACGGCAAAGGGCACGTTAT
GACTCAAACAACACTATTAGAGTTCCCTTTCTTGGAAGGCAAATCGAAAG
GCGAAGAAGAGCACATTCGAAAGAAGTACAATATTTTCTTCAATGCAGGT
TAGACTTTGAAGTCGCTAATATTCTCAATcgacttttgttttttttccct
TGGTTATCAACTTCAACTAAGTTTGGGTATaaatctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtct
taCAATATTGTCACCGGATTTGTCGTTTTATTGGATTTCTCTCATATAAT
GTGTATGTCGGATGGAAATGGTTATTTAGGTGTGTGACATTGGGTTGATG
GATGTTTACTAATTGGCAGTTTTTACACTAGGCTTGGATAGTGTTagttt
tttcttttggaaaggtgGGTTTTGGCTTTTATCAACAGTTCTGTATTGTT
TTCTTCGTGTCTCTCTGTCTGTCTGTCCGTCCGAAGATTTATGGGTTGAC
CAATTTTCTTACCATTTGAGGCTAGGTTCGAATTattaattttatattta
tttttctagaAGAGAAAAAATACGTGGTTGCCGAATCGGAGAAAATGGTG
GAGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACGTTACAATTCTA
TCCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAAAGATAGCTCGA
AAGTCACTTTGTTCGATCTTGATCGAGATCAATTCATGTTTTCAAGTAGC
CTACCACCTGCCTGTAAAGAACTCTACGATAATATCAAAGGTACGTCTAG
TTAATTTCATAACAGATCATCTATTCTGCTCCTAAAGGGATTTGGCAAAT
GTGCCGATCTAACTTGGTTGTCTGTCAAAACAATTAAAACTACGTTGCTT
TTTGGTTTTAATGATTATAAGATTGACATATGATTTTGGTGTGATTGCTT
TGCTTTAGCCAATAACTGCGCACAAAATCTCATTCCGCAAACATGAGCAA
ATTATTTTATGGAACCATGCCCTTTAGAGTGAATACTTGCCATGCCATGC
GTTGAGTAGTAGAATCTGCTCAGAGACTAATGTCTAGTTGACCTCTAATT
TCTAACGTATTTTGATGGTCTAAAATAGACGTTACTGCTTAGAAAAATAG
CCTTGACGTTTTAAATATAGGCAAGTTATTCATCAGTAGTCATTATCATC
TGCNGTTGATCTCtaatttctaatatttttttggtTCATGGTCTAGAATA
GACGTTACTACTTAAAAAATCATTATCGTCTACAGGTCTTCAACTGGAGT
TTCCAGAAGATCCTATTACGAAACTTTCAGACGCCATACGGTACAGCATC
AACACACCTGGAATGACTTTAtatgaaaagttgaaagaaaaggaagaacA
GTTTGCTTACCTACGTGTAACACTTGGGCCTGACCGCCGTACCGCACCTG
GTATTCCCTATGTTCTAGAGATCTGGCCTTCAGGTAAGGAGATTTGATTA
TGTCCGGCATTGACTAGTTTACTGTagtattaccttaagggaattaattt
tcgcgggacttattttcACGACTAACTTCGACTgtaaattttcgcgagga
tttaatttcgcgaattgacgaattttttcagattttcagatttttccttA
GTTTGATTACGAGATTTTGTGTGTTTAGTAGAGTCTTATATCTTCATAac
tgaataaaaatttattcgaattacagagacatTCGAGAGTCATTTAAGAG
AGTTTCCATTAGATCAAAAAACTTAGAATTTTTAgcgtaaaaaaattaat
tttcgagaggatcaaattttgcgaatttagCGAGAGAtgagagtttgaaa
attttcgcgagagattatatttcgcgaaaaagttgaaattcgcgaaaatt
cgcgaaatataatccccgcgaaaatttattcccttaaggtaccatgtttg
taatttttgatagaAAGATCGGGGACCGCCATAGAGCTTGGTGTATGTGG
TTTATACTATGATTTTCATTACATGGTATAATTATTTTGATGTATCCCTC
TAACAACCCTAACTCCACAATGGGATTTGGTTTAGGCCTACCAGGGTCCA
ATGTCTGTCTTTGTGAGCACGTTAAATGTACTATGTACCAGTGTATCTCT
CGCAGTACCTCTAcggcaataaattttgaaattagccgtagatatcgggt
ctgtaTTTAGACTAATGTTAACGCAATTACACCAGACATTACAAGTCAAT
TCTGCCATGCACTTTTTCAAATTATACGCTCAtatgttttcttcttttat
attaCTAATTGCGAAATTAGCATGATCAGGGAATTGTCCAGGGTTGATGA
ATCTATATTTTCTTTCTCAGGAAAAGGAAGCCCTATCCATAATCATGGAG
GAGCATGTGCAATAATTAAAGTGCTATTTGGTAGAATCACTTGCAACATC
TACAACAAGATCACACAGCCACCGGAACAAACAGAAATGCAACCTTTGAC
CAGATTTGATCTCAATGAAGAGCAAATGACCTGGATAGGCCCCAACTGGT
ATCAAACGCATCGCTTACACAACAACACTGATGATTTCTGCGCAACCATA
CAATGCTATCGATATGACTTCAATGATGCAATTCACTGGCCCAATTTCGA
TTATGTGGGTTTTGTAGAAGACAAAGAAAAATACGAGTTGGAAGAATTCT
ATCCAGATAGCGATTTCACGTTCGTTAATTTGAGACGAACTGTTCTTGAC
GAGtttcaaaaattcttagaaGGATGAGTTATGATTTTAACTTTCCTGCA
AAGATTGCAGTGCTTTcaagtaaataaatattttgttagCGTTTTTTTTT
CACAGTAAACAGTAAACCATGTTACATTTTAAAACGTTATACTGTTGAAC
CCCCATGTAATTTGTATTTAATAAATTGAAAGACCTATGTGTGAATCGAA
AAAAAACTTGATAATTTCacaattaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000729XLOC_000729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001360-exon-sc0000010-1491911889:597029..597186TCONS_00001360-exon-sc0000010-1491911889:597029..597186Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1510915933:597029..597186TCONS_00001360-exon-sc0000010-1510915933:597029..597186Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1575043694:597029..597186TCONS_00001360-exon-sc0000010-1575043694:597029..597186Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1491911889:597371..597569TCONS_00001360-exon-sc0000010-1491911889:597371..597569Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1510915933:597371..597569TCONS_00001360-exon-sc0000010-1510915933:597371..597569Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1575043694:597371..597569TCONS_00001360-exon-sc0000010-1575043694:597371..597569Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1491911889:601890..601918TCONS_00001360-exon-sc0000010-1491911889:601890..601918Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1510915933:601890..601918TCONS_00001360-exon-sc0000010-1510915933:601890..601918Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1575043694:601890..601918TCONS_00001360-exon-sc0000010-1575043694:601890..601918Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1491911889:602414..602611TCONS_00001360-exon-sc0000010-1491911889:602414..602611Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1510915933:602414..602611TCONS_00001360-exon-sc0000010-1510915933:602414..602611Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1575043694:602414..602611TCONS_00001360-exon-sc0000010-1575043694:602414..602611Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1491911889:603499..604106TCONS_00001360-exon-sc0000010-1491911889:603499..604106Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1510915933:603499..604106TCONS_00001360-exon-sc0000010-1510915933:603499..604106Clytia hemisphaericaexon
TCONS_00001360-exon-sc0000010-1575043694:603499..604106TCONS_00001360-exon-sc0000010-1575043694:603499..604106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:597029..604106 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160874	0	0.564168	0	0	0.367525	0.38933	0.360541	6.83958	11.3942	1.48641	1.91003	2.09424	1.2244	9.63785	0.99052	20.4132	18.8829	47.989	48.6334	2.84361	0.664501	4.96556	4.31117	57.3078	104.561	13.3232	27.3194	3.79398	1.67637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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