TCONS_00001340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001340
Unique NameTCONS_00001340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001340 ID=TCONS_00001340|Name=TCONS_00001340|organism=Clytia hemisphaerica|type=transcript|length=2431bp
CACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCGCAACCCTCC
CCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCGCA
CATGATCGAACAACAACAGATCAACCATGACGACGAAAACGAATTACCTT
CCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTGGC
AAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAAAAACGTTAA
TCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGTCCGGGAAAA
CTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCTTG
AAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGTCATCAGTGA
TAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGTCCCAAACGA
CGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGACGACGACGAA
CATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAAGAAAAAGGA
TTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGATA
GCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGGAAGAGACAA
TCCATTAGACGAGAATCGAGACCAAGGTCATTTACAGGGGAAAGCACACA
CGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCACGAACGAATA
AAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATGTTCCATAAT
CGTTCACCTAGAGTCAGTTCTGAACCGAAATTACAAGTAACGACACCAAC
TGACGGAACAGGCAAGAATCCGgtcACGCTGAATGACTCTGTTATCAACG
AAAAACCATCAAATCAGCGCGTCAAGACGTTAGGCTCACCATTAACTGAA
AATGCTCGAGTGAACTCAAAAGAACACGTTCGATTTATGGAGGAACCAGA
AGTTTTATCGAATAACACGAAAAGTCCGATGGAGATCCAGATGAGGAAAC
ACGAACTTCAAGCCAGACTACGCGatttaaaaacgaaaaattcTACATTA
TCGTCGCTTATCAGCCAACTTGGTATGGAATGGAAAGAGgTATGCGAGGA
AAGAATATCACTTGAAATTCGTCTGCAACGAGCACAACAAGAACTGGAGT
AAACATTtggttcttttacaaaaaaaagaaaatgaaggtGGTGGAAGTAT
TATTTCATCTTCAAGAAAGGATACTTCTTGGCTCTCATTAGATGAAACTG
GTTAGGGGTAATAttgtccaaaaatcaaaattggaaCGACTTCGTCACCA
GATTCCAAATTGACTCTCTTTCATTCATGACAAAAgcaaaatacagttga
ctctcgatTATTCGAACATCTATTATtcataattcgaacttattctcTTT
TCCCGTCAGGGAGAAaccctctataattcgaatctctctgttattcgaac
aaataagattccctgTTTGAGTTTAACTTAACAAGAGTCGACTGtaatca
aaaaacgtaagaaAGTTCTGCCTCTTTtcgtaaaaaaagaaattgactat
ACAAAATCCTAAAATTCTAGCTAGAGCTtgattaaagtctgtctcaaaat
aatttgcagctgagacaaaaatggctgtaacttttgatagagtttgaagg
aagttgcgattttgtgcttgttgaaaggATATTTGTGAgtaacttgattc
gaattctatcaaaagttacagccatttttgtctcagctgcaaactATTTT
AAGACAGACTTTAACTCCGTAGTTCCAAGTGGTTTCTTTGGCAATACAAT
ATCATTTTTTGCTGCTAGGTGTTCTTCATTTACGTTTTTTAGAAGTACTT
TTCCTGTTGTTTTGGAGTAAAATAATTAAGGTAACTCGTCTAAGACTAAC
TCCCTCTCTAACTCCCTCTATCTGTCGCTCtctggatttttatttttttg
cgaaaatttaaCGTATATATAGAATACATAGGCgtttagaaaatttttaa
gttttagtacaaaatttctaatttcaatCGAGTAAAAGGCTGACATTTCT
ATGATACTGGATTTATTTTccgtttgaaaagaaatactgactcgaaaaat
atatcattttttcacgatctgtttttttaatatttttgaaatttattttt
caaattttgactttttctttttttgttagtcattttattttgatcacgtc
ctcaatttttttttcgaaatccaaattgGTAAATATCTTTGAATTTGTAA
CAATTATAAATAtctattaattattttttaagtctaatttttttgttgtt
gttttttgctGTCAATCCTCAGGAATCTATATTGATGATGTGatagaata
tttttatttagaataaaattaaaaaacccAT
Run BLAST on NCBI

transcript from alignment at sc0000010:236711..242872+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001340 ID=TCONS_00001340|Name=TCONS_00001340|organism=Clytia hemisphaerica|type=transcript|length=6162bp|location=Sequence derived from alignment at sc0000010:236711..242872+ (Clytia hemisphaerica)
CACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCGCAACCCTCC
CCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCGCA
CATGATCGAACAACAACAGATCAACCATGACGACGAAAACGAATTACCTT
CCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTGGC
AAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAAAAACGTTAA
TCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGTCCGGGAAAA
CTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCTTG
AAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGTCATCAGTGA
TAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGTCCCAAACGA
CGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGACGACGACGAA
CATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAAGAAAAAGGA
TTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGATA
GCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGGAAGAGACAA
TCCATTAGACGAGAATCGAGACCAAGGTATGACTCGTTTTCCCAAAGTTG
AAACAACTGAATTATAGTGAGATTATTCTCACTGATTCTGATTTCGAtac
attttgttattttttatatttattttaagGAAAACGTCTTCTTTGTATTA
TTCCAATTGCAAAATCAATCGTTGAAGAACAAGAGTTATTCGGTAGGTAA
ACTTTCTCGTAATACTTTTTCCTTATTAGGTCATTTACAGGGGAAAGCAC
ACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCACGAACGA
ATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATGTTCCAT
AATCGTTCACCTAGAGTCAGTTCTGGTGAGTGCTAATTGCATTTTCGCGG
TTCATTtctctgttgttttttttacgAGGAAAGTaagagaaaaattgaaa
cacTTATCAACCTTTAAAGCATTAGAACACTGGGTTCGAGTCTACTAAGA
TTAATACAGTTACATTCTCAAAGACAACGAATTCTGACctaatttttctt
gtaaatttcTTTACCAGTCCCTTCGAAAACAACCGTGCTTTTATGGGTTG
ATTGACGTCAAACATTTGAAATGctaagaaaagtgaaaaagaattgatat
ttttttagtcACTCGAGCATTAGATATCTGCGAGATAATTGTGCCTGAGT
GGTTGTAATCTTTTAGTATTATGACATACATCAATAATAAGTAACTGACT
TTCAAATCGTTTAACGCACGTTGAATTTTCTCTTTTAGAACCGAAATTAC
AAGTAACGACACCAACTGACGGAACAGGCAAGAATCCGGTAAGCCCTTTG
AATTCTACATTCAATACTACATACACATTATGCTTAATTTTTGCATTATA
ACTTCACGTAATTTAACGCAGTAACTTcactctattcatgatatttatga
cgtaatgttttcgacggaaacaccccggtttttgccagtagtggcaaatt
ggAGCTAtagaaaaattgctcaaaatttgcCACAACTGGCAAAAATGGAG
gtttttccgtagaaaacattacgtcatgaatatcaagaattctCACTATA
TAATATGCATGTGATTAACATCAATTTTCAGCCACAAAAACCACCACGCT
CAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCCACT
GCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTCACG
ATCACTTGATGTAAGACAATTGCACAGATTTTGAATTATTGTTGATTCTA
TTGTGGTCTTGGGACCTTTACCTTTTGTATGTTTGATACTTTGATATCTA
AAGTTTTGCGTCGATTGGTATGCTGCAGCCTACAGGCATTCAAAGCCAAA
CTCAGGCCATAGGAGcctctgaaagtcaaactttctTTGAAATTCTAAAG
GCTTAAAGTTTTTAATTTCTGAAAAGGGCTCGGCATTAATAGTGTTAAGT
TTTGTCACTTCTTGTTAAACTAATTTTCATTATGCACGTCTCAACTCACC
TCCATCCTGTTCAAAAAATAACGTATTTCTCAAtaaaaaattagccaaaa
ttacGCAACCACGCCTTAAATTTTTGCCTCATCATAGATTTCGCAACAAA
ATTCCCCCATTTAATCACGCTGTCGCCAAAACCCTTCTTTCAAGTTGATG
TTAGCATTTACGTTGTTTTATCCTTCATCTTCTTTATTTTGATCATCTTT
AATCGAAACTAAGTTTTTTGTAGGAAAAATATGGTTAAATATGGTAATGa
ggcaattttttgtcttcaatcacgatcacgaaaatcagcaaaaaatttgg
ataatcataatccctttgaaaaagtccaaatcgcggctcaaaaatctttc
taatcacgatcacgttttgacctcttatcacgccatcacgaaaaccgcct
CGGTAATGATATGCACGAAATATACAGTGGCCCTTCCCGAGGAGGATGAT
TTTTCTTCTGCCtattatattttccaatctgttattcttttttttctttt
tttcaggtcACGCTGAATGACTCTGGTAAGTTTTGGTTCTTCCCTCAACC
TGTATCCAAGCaagaaaatcttgaaatctAACCAAGATGATTTGAAAGAT
GACTTTAATATAGAGAGATAATATACAGTTGAACTCAGGTAATTCGAATT
CTCAAGGTACCgagaatttttttcgaattacacgAGTTTTGAACTAGGTG
AGTTTTCGTATTTTTGACCTAAGTCAATGAAAAAAGTCTTTCCCAGGTTT
ACTTTTATAAGAAATGGAAGGCAAAAGCAGTGGACGAGCTCCAATCGgat
gtaaaaatgaaaacattcgaTTGGCAAACAATCATTTGAACGTCAAAAAT
GTTCGATAGAAAACGTTCGATTGACAAAATGTCGAGTTAATGTCGAGTTT
GTCAGCTTTAAAAACTcaagaaattcgaaaatttgaatTACATGATTAAA
ATGTCTTGATGGGACCGGAAAATCTGTTCGATTTGCatgatttttcgaat
tacatgggttcgaattataggagtTTTCTTGTAAGGTTTCCAAGGTAAAT
TCTCAGGGGACCACAGAATCTGTTCGACTTAAGTGagttttcgaattata
gaagttcgaattacaggAGTTCAACTGTAGTCTGTAAAACCAATTGGTAC
GAGTTGCTAGCCTTTATTAGTCTCTTTTATAGTTTTATAAACACCATTCT
TAATCTTTTCTAGTTATCAACGAAAAACCATCAAATCAGCGCGTCAAGAC
GTTAGGCTCACCATTAACTGAAAATGCTCGAGTGAACTCAAAAGAACACG
TTCGATTTATGGAGGAACCAGAAGTTTTATCGAATAACACGAAAAGGTTT
GTTTGAAATTACTATGTATTcatattttagtgtttttttacGAAAAACAT
CCCATCTATTGCTAGTAGTGGCAACTTAAAGCTTgagaaaaattgtttaa
aatttgctACTACTTGCAAAACCAGGGTACTTCCGTAGAAAAAAACATCA
CTTCGTGAATGTCATGAATACTAAGTTCTTGAAACATCTGAAATCTCATC
ATCAAATATTTCGATTTCAACAAAATTGACCGACGGCTGTGAACTGTAGG
GGTTTGGTTTGGTTGGACAGCCGTTGGGTATATATGGGTGCCATACATGT
ACGAGGGTCAATTTTCTAGCCTATGGCTCTTTGATACACCGCCACCAGTC
AATCCTATTCACCCACCTCCGCCCCCAAGATGTCAGAAACGAAAGGATGT
TAAAATCTGCTggttaaaaatatttgtttctgaAATAAATTAGGAATACC
CACCATAGatattttaaactatttttgGTTGATTAGCCTCTAAGTTCCAT
TCGCTTTAAGCCTGTACTTATCTGTGATTTGCttgcaacttttcaaaaaa
gacttCAATTCTAACACAtttataccgttgaaaagataattcagagcact
ataatttttaaaaataattcaaaagttctcaaaaataaagatgaaaaatg
aagaagaaaaaaaagattttttatccttttgtgcttgctataaacttcat
ttttggtacaGAGGTACTTTGAAGCCTGCTGTACCNttgctataaacttc
atttttggtacaGAGGTACTTTGGAGCCTGCTGTACCAAAAAATAAAGTT
GCTATCACCAAATACAAACCTCTTATAATCTCTTCATCACATTCATTTCC
AGTCCGATGGAGATCCAGATGAGGAAACACGAACTTCAAGCCAGACTACG
CGatttaaaaacgaaaaattcTACATTATCGTCGCTTATCAGCCAACTTG
GTATGGAATGGAAAGAGGTATATATGATTGCTAACTTGGTGTAGCTCTTC
AAAAACATAATTGAGAATTTCAAGAAGCTGatcaatctttttttataagt
ataCAAAAATCTGAAACAGGCTTGGAGATGCTTAAGTCGAGGGCTTGACA
ATGCTAAATAATGCTTTGATGGTGCTTGCTTGTTTCCGAAAATAAATTCC
Tcaatctgagcctagatatgctttataaatacaatttttttttaaagcat
gTACTATCAATTTTGAGCTTCAAACAATAACAAcctttttattatttctt
ttcgttggaaagataatccaGGATGTTCAACCTTACTAAACCAccccttt
tcttttctttatttctttaggTATGCGAGGAAAGAATATCACTTGAAATT
CGTCTGCAACGAGCACAACAAGAACTGGAGTAAACATTtggttcttttac
aaaaaaaagaaaatgaaggtGGTGGAAGTATTATTTCATCTTCAAGAAAG
GATACTTCTTGGCTCTCATTAGATGAAACTGGTTAGGGGTAATAttgtcc
aaaaatcaaaattggaaCGACTTCGTCACCAGATTCCAAATTGACTCTCT
TTCATTCATGACAAAAgcaaaatacagttgactctcgatTATTCGAACAT
CTATTATtcataattcgaacttattctcTTTTCCCGTCAGGGAGAAaccc
tctataattcgaatctctctgttattcgaacaaataagattccctgTTTG
AGTTTAACTTAACAAGAGTCGACTGtaatcaaaaaacgtaagaaAGTTCT
GCCTCTTTtcgtaaaaaaagaaattgactatACAAAATCCTAAAATTCTA
GCTAGAGCTtgattaaagtctgtctcaaaataatttgcagctgagacaaa
aatggctgtaacttttgatagagtttgaaggaagttgcgattttgtgctt
gttgaaaggATATTTGTGAgtaacttgattcgaattctatcaaaagttac
agccatttttgtctcagctgcaaactATTTTAAGACAGACTTTAACTCCG
TAGTTCCAAGTGGTTTCTTTGGCAATACAATATCATTTTTTGCTGCTAGG
TGTTCTTCATTTACGTTTTTTAGAAGTACTTTTCCTGTTGTTTTGGAGTA
AAATAATTAAGGTAACTCGTCTAAGACTAACTCCCTCTCTAACTCCCTCT
ATCTGTCGCTCtctggatttttatttttttgcgaaaatttaaCGTATATA
TAGAATACATAGGCgtttagaaaatttttaagttttagtacaaaatttct
aatttcaatCGAGTAAAAGGCTGACATTTCTATGATACTGGATTTATTTT
ccgtttgaaaagaaatactgactcgaaaaatatatcattttttcacgatc
tgtttttttaatatttttgaaatttatttttcaaattttgactttttctt
tttttgttagtcattttattttgatcacgtcctcaatttttttttcgaaa
tccaaattgGTAAATATCTTTGAATTTGTAACAATTATAAATAtctatta
attattttttaagtctaatttttttgttgttgttttttgctGTCAATCCT
CAGGAATCTATATTGATGATGTGatagaatatttttatttagaataaaat
taaaaaacccAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000722XLOC_000722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001340-exon-sc0000010-1491911889:236711..237386TCONS_00001340-exon-sc0000010-1491911889:236711..237386Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:236711..237386TCONS_00001340-exon-sc0000010-1510915933:236711..237386Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:236711..237386TCONS_00001340-exon-sc0000010-1575043694:236711..237386Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:237590..237735TCONS_00001340-exon-sc0000010-1491911889:237590..237735Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:237590..237735TCONS_00001340-exon-sc0000010-1510915933:237590..237735Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:237590..237735TCONS_00001340-exon-sc0000010-1575043694:237590..237735Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:238149..238198TCONS_00001340-exon-sc0000010-1491911889:238149..238198Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:238149..238198TCONS_00001340-exon-sc0000010-1510915933:238149..238198Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:238149..238198TCONS_00001340-exon-sc0000010-1575043694:238149..238198Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:239417..239435TCONS_00001340-exon-sc0000010-1491911889:239417..239435Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:239417..239435TCONS_00001340-exon-sc0000010-1510915933:239417..239435Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:239417..239435TCONS_00001340-exon-sc0000010-1575043694:239417..239435Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:240124..240256TCONS_00001340-exon-sc0000010-1491911889:240124..240256Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:240124..240256TCONS_00001340-exon-sc0000010-1510915933:240124..240256Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:240124..240256TCONS_00001340-exon-sc0000010-1575043694:240124..240256Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:241113..241227TCONS_00001340-exon-sc0000010-1491911889:241113..241227Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:241113..241227TCONS_00001340-exon-sc0000010-1510915933:241113..241227Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:241113..241227TCONS_00001340-exon-sc0000010-1575043694:241113..241227Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:241581..242872TCONS_00001340-exon-sc0000010-1491911889:241581..242872Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:241581..242872TCONS_00001340-exon-sc0000010-1510915933:241581..242872Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:241581..242872TCONS_00001340-exon-sc0000010-1575043694:241581..242872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:236711..242872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.59328	7.41585	4.49039	4.18213	18.6838	12.6739	14.8121	15.6319	6.80261	9.15567	7.20756	4.78908	8.30056	8.53736	5.88292	5.18325	8.84686	10.2467	11.4055	8.46967	11.2542	12.2549	8.87808	9.47164	8.98259	10.3589	8.87538	8.97675	12.1993	10.9452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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