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TCONS_00001340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001340
Unique NameTCONS_00001340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001340 ID=TCONS_00001340|Name=TCONS_00001340|organism=Clytia hemisphaerica|type=transcript|length=2431bp
CACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCGCAACCCTCC
CCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCGCA
CATGATCGAACAACAACAGATCAACCATGACGACGAAAACGAATTACCTT
CCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTGGC
AAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAAAAACGTTAA
TCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGTCCGGGAAAA
CTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCTTG
AAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGTCATCAGTGA
TAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGTCCCAAACGA
CGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGACGACGACGAA
CATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAAGAAAAAGGA
TTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGATA
GCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGGAAGAGACAA
TCCATTAGACGAGAATCGAGACCAAGGTCATTTACAGGGGAAAGCACACA
CGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCACGAACGAATA
AAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATGTTCCATAAT
CGTTCACCTAGAGTCAGTTCTGAACCGAAATTACAAGTAACGACACCAAC
TGACGGAACAGGCAAGAATCCGgtcACGCTGAATGACTCTGTTATCAACG
AAAAACCATCAAATCAGCGCGTCAAGACGTTAGGCTCACCATTAACTGAA
AATGCTCGAGTGAACTCAAAAGAACACGTTCGATTTATGGAGGAACCAGA
AGTTTTATCGAATAACACGAAAAGTCCGATGGAGATCCAGATGAGGAAAC
ACGAACTTCAAGCCAGACTACGCGatttaaaaacgaaaaattcTACATTA
TCGTCGCTTATCAGCCAACTTGGTATGGAATGGAAAGAGgTATGCGAGGA
AAGAATATCACTTGAAATTCGTCTGCAACGAGCACAACAAGAACTGGAGT
AAACATTtggttcttttacaaaaaaaagaaaatgaaggtGGTGGAAGTAT
TATTTCATCTTCAAGAAAGGATACTTCTTGGCTCTCATTAGATGAAACTG
GTTAGGGGTAATAttgtccaaaaatcaaaattggaaCGACTTCGTCACCA
GATTCCAAATTGACTCTCTTTCATTCATGACAAAAgcaaaatacagttga
ctctcgatTATTCGAACATCTATTATtcataattcgaacttattctcTTT
TCCCGTCAGGGAGAAaccctctataattcgaatctctctgttattcgaac
aaataagattccctgTTTGAGTTTAACTTAACAAGAGTCGACTGtaatca
aaaaacgtaagaaAGTTCTGCCTCTTTtcgtaaaaaaagaaattgactat
ACAAAATCCTAAAATTCTAGCTAGAGCTtgattaaagtctgtctcaaaat
aatttgcagctgagacaaaaatggctgtaacttttgatagagtttgaagg
aagttgcgattttgtgcttgttgaaaggATATTTGTGAgtaacttgattc
gaattctatcaaaagttacagccatttttgtctcagctgcaaactATTTT
AAGACAGACTTTAACTCCGTAGTTCCAAGTGGTTTCTTTGGCAATACAAT
ATCATTTTTTGCTGCTAGGTGTTCTTCATTTACGTTTTTTAGAAGTACTT
TTCCTGTTGTTTTGGAGTAAAATAATTAAGGTAACTCGTCTAAGACTAAC
TCCCTCTCTAACTCCCTCTATCTGTCGCTCtctggatttttatttttttg
cgaaaatttaaCGTATATATAGAATACATAGGCgtttagaaaatttttaa
gttttagtacaaaatttctaatttcaatCGAGTAAAAGGCTGACATTTCT
ATGATACTGGATTTATTTTccgtttgaaaagaaatactgactcgaaaaat
atatcattttttcacgatctgtttttttaatatttttgaaatttattttt
caaattttgactttttctttttttgttagtcattttattttgatcacgtc
ctcaatttttttttcgaaatccaaattgGTAAATATCTTTGAATTTGTAA
CAATTATAAATAtctattaattattttttaagtctaatttttttgttgtt
gttttttgctGTCAATCCTCAGGAATCTATATTGATGATGTGatagaata
tttttatttagaataaaattaaaaaacccAT
Run BLAST on NCBI

transcript from alignment at sc0000010:236711..242872+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001340 ID=TCONS_00001340|Name=TCONS_00001340|organism=Clytia hemisphaerica|type=transcript|length=6162bp|location=Sequence derived from alignment at sc0000010:236711..242872+ (Clytia hemisphaerica)
CACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCGCAACCCTCC CCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCGCA CATGATCGAACAACAACAGATCAACCATGACGACGAAAACGAATTACCTT CCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTGGC AAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAAAAACGTTAA TCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGTCCGGGAAAA CTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCTTG AAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGTCATCAGTGA TAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGTCCCAAACGA CGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGACGACGACGAA CATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAAGAAAAAGGA TTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGATA GCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGGAAGAGACAA TCCATTAGACGAGAATCGAGACCAAGGTATGACTCGTTTTCCCAAAGTTG AAACAACTGAATTATAGTGAGATTATTCTCACTGATTCTGATTTCGAtac attttgttattttttatatttattttaagGAAAACGTCTTCTTTGTATTA TTCCAATTGCAAAATCAATCGTTGAAGAACAAGAGTTATTCGGTAGGTAA ACTTTCTCGTAATACTTTTTCCTTATTAGGTCATTTACAGGGGAAAGCAC ACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCACGAACGA ATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATGTTCCAT AATCGTTCACCTAGAGTCAGTTCTGGTGAGTGCTAATTGCATTTTCGCGG TTCATTtctctgttgttttttttacgAGGAAAGTaagagaaaaattgaaa cacTTATCAACCTTTAAAGCATTAGAACACTGGGTTCGAGTCTACTAAGA TTAATACAGTTACATTCTCAAAGACAACGAATTCTGACctaatttttctt gtaaatttcTTTACCAGTCCCTTCGAAAACAACCGTGCTTTTATGGGTTG ATTGACGTCAAACATTTGAAATGctaagaaaagtgaaaaagaattgatat ttttttagtcACTCGAGCATTAGATATCTGCGAGATAATTGTGCCTGAGT GGTTGTAATCTTTTAGTATTATGACATACATCAATAATAAGTAACTGACT TTCAAATCGTTTAACGCACGTTGAATTTTCTCTTTTAGAACCGAAATTAC AAGTAACGACACCAACTGACGGAACAGGCAAGAATCCGGTAAGCCCTTTG AATTCTACATTCAATACTACATACACATTATGCTTAATTTTTGCATTATA ACTTCACGTAATTTAACGCAGTAACTTcactctattcatgatatttatga cgtaatgttttcgacggaaacaccccggtttttgccagtagtggcaaatt ggAGCTAtagaaaaattgctcaaaatttgcCACAACTGGCAAAAATGGAG gtttttccgtagaaaacattacgtcatgaatatcaagaattctCACTATA TAATATGCATGTGATTAACATCAATTTTCAGCCACAAAAACCACCACGCT CAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCCACT GCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTCACG ATCACTTGATGTAAGACAATTGCACAGATTTTGAATTATTGTTGATTCTA TTGTGGTCTTGGGACCTTTACCTTTTGTATGTTTGATACTTTGATATCTA AAGTTTTGCGTCGATTGGTATGCTGCAGCCTACAGGCATTCAAAGCCAAA CTCAGGCCATAGGAGcctctgaaagtcaaactttctTTGAAATTCTAAAG GCTTAAAGTTTTTAATTTCTGAAAAGGGCTCGGCATTAATAGTGTTAAGT TTTGTCACTTCTTGTTAAACTAATTTTCATTATGCACGTCTCAACTCACC TCCATCCTGTTCAAAAAATAACGTATTTCTCAAtaaaaaattagccaaaa ttacGCAACCACGCCTTAAATTTTTGCCTCATCATAGATTTCGCAACAAA ATTCCCCCATTTAATCACGCTGTCGCCAAAACCCTTCTTTCAAGTTGATG TTAGCATTTACGTTGTTTTATCCTTCATCTTCTTTATTTTGATCATCTTT AATCGAAACTAAGTTTTTTGTAGGAAAAATATGGTTAAATATGGTAATGa ggcaattttttgtcttcaatcacgatcacgaaaatcagcaaaaaatttgg ataatcataatccctttgaaaaagtccaaatcgcggctcaaaaatctttc taatcacgatcacgttttgacctcttatcacgccatcacgaaaaccgcct CGGTAATGATATGCACGAAATATACAGTGGCCCTTCCCGAGGAGGATGAT TTTTCTTCTGCCtattatattttccaatctgttattcttttttttctttt tttcaggtcACGCTGAATGACTCTGGTAAGTTTTGGTTCTTCCCTCAACC TGTATCCAAGCaagaaaatcttgaaatctAACCAAGATGATTTGAAAGAT GACTTTAATATAGAGAGATAATATACAGTTGAACTCAGGTAATTCGAATT CTCAAGGTACCgagaatttttttcgaattacacgAGTTTTGAACTAGGTG AGTTTTCGTATTTTTGACCTAAGTCAATGAAAAAAGTCTTTCCCAGGTTT ACTTTTATAAGAAATGGAAGGCAAAAGCAGTGGACGAGCTCCAATCGgat gtaaaaatgaaaacattcgaTTGGCAAACAATCATTTGAACGTCAAAAAT GTTCGATAGAAAACGTTCGATTGACAAAATGTCGAGTTAATGTCGAGTTT GTCAGCTTTAAAAACTcaagaaattcgaaaatttgaatTACATGATTAAA ATGTCTTGATGGGACCGGAAAATCTGTTCGATTTGCatgatttttcgaat tacatgggttcgaattataggagtTTTCTTGTAAGGTTTCCAAGGTAAAT TCTCAGGGGACCACAGAATCTGTTCGACTTAAGTGagttttcgaattata gaagttcgaattacaggAGTTCAACTGTAGTCTGTAAAACCAATTGGTAC GAGTTGCTAGCCTTTATTAGTCTCTTTTATAGTTTTATAAACACCATTCT TAATCTTTTCTAGTTATCAACGAAAAACCATCAAATCAGCGCGTCAAGAC GTTAGGCTCACCATTAACTGAAAATGCTCGAGTGAACTCAAAAGAACACG TTCGATTTATGGAGGAACCAGAAGTTTTATCGAATAACACGAAAAGGTTT GTTTGAAATTACTATGTATTcatattttagtgtttttttacGAAAAACAT CCCATCTATTGCTAGTAGTGGCAACTTAAAGCTTgagaaaaattgtttaa aatttgctACTACTTGCAAAACCAGGGTACTTCCGTAGAAAAAAACATCA CTTCGTGAATGTCATGAATACTAAGTTCTTGAAACATCTGAAATCTCATC ATCAAATATTTCGATTTCAACAAAATTGACCGACGGCTGTGAACTGTAGG GGTTTGGTTTGGTTGGACAGCCGTTGGGTATATATGGGTGCCATACATGT ACGAGGGTCAATTTTCTAGCCTATGGCTCTTTGATACACCGCCACCAGTC AATCCTATTCACCCACCTCCGCCCCCAAGATGTCAGAAACGAAAGGATGT TAAAATCTGCTggttaaaaatatttgtttctgaAATAAATTAGGAATACC CACCATAGatattttaaactatttttgGTTGATTAGCCTCTAAGTTCCAT TCGCTTTAAGCCTGTACTTATCTGTGATTTGCttgcaacttttcaaaaaa gacttCAATTCTAACACAtttataccgttgaaaagataattcagagcact ataatttttaaaaataattcaaaagttctcaaaaataaagatgaaaaatg aagaagaaaaaaaagattttttatccttttgtgcttgctataaacttcat ttttggtacaGAGGTACTTTGAAGCCTGCTGTACCNttgctataaacttc atttttggtacaGAGGTACTTTGGAGCCTGCTGTACCAAAAAATAAAGTT GCTATCACCAAATACAAACCTCTTATAATCTCTTCATCACATTCATTTCC AGTCCGATGGAGATCCAGATGAGGAAACACGAACTTCAAGCCAGACTACG CGatttaaaaacgaaaaattcTACATTATCGTCGCTTATCAGCCAACTTG GTATGGAATGGAAAGAGGTATATATGATTGCTAACTTGGTGTAGCTCTTC AAAAACATAATTGAGAATTTCAAGAAGCTGatcaatctttttttataagt ataCAAAAATCTGAAACAGGCTTGGAGATGCTTAAGTCGAGGGCTTGACA ATGCTAAATAATGCTTTGATGGTGCTTGCTTGTTTCCGAAAATAAATTCC Tcaatctgagcctagatatgctttataaatacaatttttttttaaagcat gTACTATCAATTTTGAGCTTCAAACAATAACAAcctttttattatttctt ttcgttggaaagataatccaGGATGTTCAACCTTACTAAACCAccccttt tcttttctttatttctttaggTATGCGAGGAAAGAATATCACTTGAAATT CGTCTGCAACGAGCACAACAAGAACTGGAGTAAACATTtggttcttttac aaaaaaaagaaaatgaaggtGGTGGAAGTATTATTTCATCTTCAAGAAAG GATACTTCTTGGCTCTCATTAGATGAAACTGGTTAGGGGTAATAttgtcc aaaaatcaaaattggaaCGACTTCGTCACCAGATTCCAAATTGACTCTCT TTCATTCATGACAAAAgcaaaatacagttgactctcgatTATTCGAACAT CTATTATtcataattcgaacttattctcTTTTCCCGTCAGGGAGAAaccc tctataattcgaatctctctgttattcgaacaaataagattccctgTTTG AGTTTAACTTAACAAGAGTCGACTGtaatcaaaaaacgtaagaaAGTTCT GCCTCTTTtcgtaaaaaaagaaattgactatACAAAATCCTAAAATTCTA GCTAGAGCTtgattaaagtctgtctcaaaataatttgcagctgagacaaa aatggctgtaacttttgatagagtttgaaggaagttgcgattttgtgctt gttgaaaggATATTTGTGAgtaacttgattcgaattctatcaaaagttac agccatttttgtctcagctgcaaactATTTTAAGACAGACTTTAACTCCG TAGTTCCAAGTGGTTTCTTTGGCAATACAATATCATTTTTTGCTGCTAGG TGTTCTTCATTTACGTTTTTTAGAAGTACTTTTCCTGTTGTTTTGGAGTA AAATAATTAAGGTAACTCGTCTAAGACTAACTCCCTCTCTAACTCCCTCT ATCTGTCGCTCtctggatttttatttttttgcgaaaatttaaCGTATATA TAGAATACATAGGCgtttagaaaatttttaagttttagtacaaaatttct aatttcaatCGAGTAAAAGGCTGACATTTCTATGATACTGGATTTATTTT ccgtttgaaaagaaatactgactcgaaaaatatatcattttttcacgatc tgtttttttaatatttttgaaatttatttttcaaattttgactttttctt tttttgttagtcattttattttgatcacgtcctcaatttttttttcgaaa tccaaattgGTAAATATCTTTGAATTTGTAACAATTATAAATAtctatta attattttttaagtctaatttttttgttgttgttttttgctGTCAATCCT CAGGAATCTATATTGATGATGTGatagaatatttttatttagaataaaat taaaaaacccAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000722XLOC_000722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001340-exon-sc0000010-1491911889:236711..237386TCONS_00001340-exon-sc0000010-1491911889:236711..237386Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:236711..237386TCONS_00001340-exon-sc0000010-1510915933:236711..237386Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:236711..237386TCONS_00001340-exon-sc0000010-1575043694:236711..237386Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:237590..237735TCONS_00001340-exon-sc0000010-1491911889:237590..237735Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:237590..237735TCONS_00001340-exon-sc0000010-1510915933:237590..237735Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:237590..237735TCONS_00001340-exon-sc0000010-1575043694:237590..237735Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:238149..238198TCONS_00001340-exon-sc0000010-1491911889:238149..238198Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:238149..238198TCONS_00001340-exon-sc0000010-1510915933:238149..238198Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:238149..238198TCONS_00001340-exon-sc0000010-1575043694:238149..238198Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:239417..239435TCONS_00001340-exon-sc0000010-1491911889:239417..239435Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:239417..239435TCONS_00001340-exon-sc0000010-1510915933:239417..239435Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:239417..239435TCONS_00001340-exon-sc0000010-1575043694:239417..239435Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:240124..240256TCONS_00001340-exon-sc0000010-1491911889:240124..240256Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:240124..240256TCONS_00001340-exon-sc0000010-1510915933:240124..240256Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:240124..240256TCONS_00001340-exon-sc0000010-1575043694:240124..240256Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:241113..241227TCONS_00001340-exon-sc0000010-1491911889:241113..241227Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:241113..241227TCONS_00001340-exon-sc0000010-1510915933:241113..241227Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:241113..241227TCONS_00001340-exon-sc0000010-1575043694:241113..241227Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1491911889:241581..242872TCONS_00001340-exon-sc0000010-1491911889:241581..242872Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1510915933:241581..242872TCONS_00001340-exon-sc0000010-1510915933:241581..242872Clytia hemisphaericaexon
TCONS_00001340-exon-sc0000010-1575043694:241581..242872TCONS_00001340-exon-sc0000010-1575043694:241581..242872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:236711..242872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.59328 7.41585 4.49039 4.18213 18.6838 12.6739 14.8121 15.6319 6.80261 9.15567 7.20756 4.78908 8.30056 8.53736 5.88292 5.18325 8.84686 10.2467 11.4055 8.46967 11.2542 12.2549 8.87808 9.47164 8.98259 10.3589 8.87538 8.97675 12.1993 10.9452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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