TCONS_00001339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001339
Unique NameTCONS_00001339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001339 ID=TCONS_00001339|Name=TCONS_00001339|organism=Clytia hemisphaerica|type=transcript|length=1768bp
gaaaaaacggtttttaaaaaccctttttttaatCTCTATAAATATAAGAG
TGGCTTATTACTGTGATATTAGAAAAAAAGAGTGCCCTGGACTTGCGTTT
TTGTTGTGATAAGCTATAAAGAGTTAGAGTCAGAGAAAATTTGTCAATGA
AGCAGTGACTTGTATGGGCTTAGATTGAATAATTTATAGAGAATCAAGTG
TTTTTTTGGTTTGGTGCCATGGATGTTCGACAATCTCGTTCAAGACCATA
TTATTCAAGTTATCAGAGAAGCCAAACGGAGAGCATGGCGTCATCCAGCA
TGGCATCCAGTATCCCAGAAAGCACGAGTAGTGTTGACAGTAGTTCCGAC
AATGAAGAAATGAGAATCACGCAAGAACAAAGAGAATATTACACCAACCA
ATTCAAAAGTTTACAACCCAATGAAGACGATGTTATCAAAGGTCCCCAAG
CTCGTGATTTCTTCTTGAAGTCGAATCTAGCGATGGAAACTCTTTCTAAG
ATCTGgCATCTATCAGACTTGGATAAAGATGGCGCATTGAACTTGGAGGA
GTTTCAGATTGCAATGCATCTGGTTGTGTTAATTAAACATGGTTACGAGT
TACCGATGGTTTTACCTCCTTCCCTTCTTGGTCAAGAGCAAGTCCATCAA
ATGGCAAGTCAAGATGGTGTGGATATGAGCGATGAAGATGAGAAATTGAT
TTCTGATGACGAAAAACAAGAATCTGGTGATTGGTCCGCTGAATTTGATG
CTACGGATGGGGCACCAATTGATCGTGGTGAACGTATAGTGCAAACTTAC
GCGCAACCCTCCCCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACA
ACCCGTCTCGCACATGATCGAACAACAACAGATCAACCATGACGACGAAA
ACGAATTACCTTCCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCC
GCGGCGGGTGGCAAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAA
TAAAAACGTTAATCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCAC
CGTCCGGGAAAACTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCG
AAGAAAGCCTTGAAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGG
TGTCATCAGTGATAGCGAAAATAATAAACTGGTCTCGATTGATAATCACA
TGTCCCAAACGACGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTC
GACGACGACGAACATTTGACGGACGACCACGATCACGAACGTTTGAAAGT
CAAGAAAAAGGATTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGC
GTTCGATTGATAGCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAA
TGGAAGAGACAATCCATTAGACGAGAATCGAGACCAAGGTCATTTACAGG
GGAAAGCACACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGC
CACGAACGAATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAA
ATGTTCCATAATCGTTCACCTAGAGTCAGTTCTGAACCGAAATTACAAGT
AACGACACCAACTGACGGAACAGGCAAGAATCCGCCACAAAAACCACCAC
GCTCAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCC
ACTGCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTC
ACGATCACTTGATGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000010:232709..238625+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001339 ID=TCONS_00001339|Name=TCONS_00001339|organism=Clytia hemisphaerica|type=transcript|length=5917bp|location=Sequence derived from alignment at sc0000010:232709..238625+ (Clytia hemisphaerica)
gaaaaaacggtttttaaaaaccctttttttaatCTCTATAAATATAAGAG
TGGCTTATTACTGTGATATTAGAAAAAAAGAGTGCCCTGGACTTGCGTTT
TTGTTGTGATAAGCTATAAAGAGTTAGAGTCAGAGAAAATTTGTCAATGA
AGCAGTGACTTGTATGGGCTTAGATTGAATAATTTATAGAGAATCAAGTG
TTTTTTTGGTTTGGTGCCATGGATGTTCGACAATCTCGTTCAAGACCATA
TTATTCAAGTTATCAGTAAGTTATTGTAGGGTCAGCTATACACGCTCATG
CAATGTTTATATTTTGTCCCCAGAAATTGGGGTCTGTCATTCGTCAACAT
TTGATACGTTTTTTCTCCTTTTCAACTTTTAATTCTGGTGGTTCTGCTAC
TAGTAAAACAGAGTAAGTTCTTTCGTTTACAGACTACCTGCCACTGAGTT
TAAAGTGCTTTTATCGCATTCAAATTTGCTCTGAATGCTTTTCAGTCCAT
CTAAAATAAACGTATAATATTAATCAATACCGAGTTTGACCCCTATAATA
AAGccggatgagctggagtttttacaagctggGATGCGATTTTCTTTGTG
TGTATTTTACGGAACAAGCACACCCGATATGttatactttcaaaaaattc
tctaaCCCCAAGttccgaagtcccgagttgaactgtgccaacactctcca
aagtataagcctttgaaattttgaggatGGTGACGCCTATTAGAAGGCGG
TtctctgaaaaatctttttctttaagAATTCCTTTGATAAGGGGGCCTGG
AATTATTTTGGAGAaactgaaattatgacgtcacccgcaaaataactcgg
aaaaaataacttgggaaaaaataactcggaaattCCAGGCCCCTTCGATA
AGTTTCACTGCACTACGATATTCTAAGTGGCTGAGTCGGTTTTGCTCCAA
AAGGTTCTGGAAATGTAGTACAGTAGAGGAAATTTTCCGTTCAAGGAGCT
TAGGCATATTTTGTATCAGTAGCATCAATAAGTTCAACATAGTTCGTTTC
AATCGatcaaatcaaattcaaaagagGCTATTAATCTCAATATTACCTAC
TATGCTTATATCTCTAAGTAGTGGGTAGCTCAAAGGAAGAGCATTCAGCT
ACGGTGTGTTCGTGGGCTCAATTTATCGACGGGTCGCAAACTAACTATAT
CTCTTTTTCCCTCCAGGAGAAGCCAAACGGAGAGCATGGCGTCATCCAGC
ATGGCATCCAGTATCCCAGAAAGCACGAGTAGTGTTGACAGTAGTTCCGA
CAATGAAGAAATGAGAATCACGCAAGAACAAAGAGAATATTACACCAACC
AATTCAAAAGTTTACAACCCAATGAAGACGATGTTATCAAAGGTAACGAT
TATCgcaggaaaaaatctttaaatcacACTCGTGTGAAAACTGATTTCCA
AGGGTGAGATTCGGTTCGTTTTCACACTATTTGTTTACACCTTGTTGAAT
CAATTATCAAACTAAAAACTCAATCTGGAATCACAATCTGACTTAATTCT
TCTTAAATTTGAGGTGTTTTAATCTAATACTTAAATCATCATGGTGTAAA
CACTAAGGGTGCTATTTACGATTTCACACCCGTGTGAAAACGAACCGAAT
CTCACCCTGTGAAATAAGTTTTCACACGAGTGTGATTTAacgattttttc
ctgtgtattaTGATAGTTAATGTTTTTGTCCGAAAAGTTATACGCCCTTA
TTTTTCGACCTCGTCCTTCCACAGCCTCAAAGCGTTTAAATAATGATGAA
GTTTTGTTAATAATGATGATTCTAGCTCATTAAACTATAACTGATTCTGT
TTCAACTACagtgaagtttttttttaactcgctggaacctctataactcg
ataGTTTCCTTAAAACGAACAAGTTTGTCTTGGAGACTTCCAATGTATTT
GTTTCATATCAAGTTGTATAActcattgaatttttttgtctaGGTCCCCA
AGCTCGTGATTTCTTCTTGAAGTCGAATCTAGCGATGGAAACTCTTTCTA
AGATCTGGTATGTATGTTTCCCTTGTAGTAATTATCTGTCAATTATAATA
TATTACCCCCTCTATACATGTAAGGTCTTCATTCGATTGATCTTAAACAA
GCTCATTACAGCTCGCTTTGGTGCTTTCAATTAGAtttgaactttttctt
ttcGACGAGATTTGTCAATACAGTGGAAATTTGATTATTGAAACTTGCAT
ATATTTCTCTTTCTCAACAACCCTTAggaatttattttattaatcAAAGT
TTTATTCAACCTCGTCCCTGTGTAAaacaggctttatttacgttagtgat
tgacgccagagaatatcctggtgttggctgatgcgagacTATCATCTCAA
AGTGAGAACTTctcaaacaacaaaaaagtgaCGCATTCGAAAAGCAGACA
ATGCCAGGGTACTATCTGGGGTTATCAGTAATAAGCATAAATAAcagata
atacgcagggaatgAGGTTGTGTTTTATTGACAAATTGTTCACAAATAAT
CGAATAACctctttaaattaaaaatttcaggCATCTATCAGACTTGGATA
AAGATGGCGCATTGAACTTGGAGGAGTTTCAGATTGCAATGCATCTGGTT
GTGTTAATTAAACATGGTTACGAGTTACCGATGGTTTTACCTCCTTCCCT
TCTTGGTCAAGAGCAAGGTACGTTGTTAGTCTGCCGTCAAAACATGCCTG
GTTATTTTAAAATATCATAATTTGACTTTATCTTTAGATAGTTGATGATT
AGCTTAAGGTTTATTTCCATCTCAAACCATTCTAAGGTTGTTGTTTTTTA
GTGGTCGCTAACTGGATttctatataatatatattcatgatatgcaccac
tgcaatgtcttctgacattacgtcatggaaccaatagctcattggttgga
agtgacgtaaaagcagtcaatacgtcactctCAACCAATCAgttattggg
tggaacggaagacattgcaatggcgcatatcatgaatagaataTTATTTT
TATCTCAAATGTCTCCTAATTGGAACAAGTTAACAATACGTTAtaatata
taaaggtcagtggttataccttgactcgaacaaatttgtgttcgcTGCGa
agggttcgagttatggatacTCCtctgtaaaatgtttttttttaccaccg
ggaATCTAGTATTGTATCCGAATCCATATAATCCGAAAACAGGTGACTTT
TTATGTTTCTGTATGACTTTTAAAACTTGTCCTTTCATTATGTCAGTCCA
TCAAATGGCAAGTCAAGATGGTGTGGATATGAGCGATGAAGATGAGAAAT
TGATTTCTGATGACGAAAAACAAGAATCTGGTGATGTACGTAACGCTCTT
TACGTCTTGCTATTTACATATTATGGAACACGATAGAGTTTCAATAGTAT
TCCAAGATAATTAAGATAATATTATCCCGAATAGTTACTCCTTCTCGGTT
TATAATCCGCTAAAAGTGGTGAATTTTGACAACTCAGAGAAATTGAAAGG
TTTTCCTTCACTCCGCTTTTACCATGGGATTAAAAACTGTAGACGTACAG
AGGAGACAAAAACGTTCTGACGATTCGCGGATAGGATATAGCGCTAGAAG
TGTTGTATAGGGTATCTTATAAAACTGTTTCTCCTTTATTTCTAGTGGTC
CGCTGAATTTGATGCTACGGATGGGGTGAGTTGATTTATGGTTTAGGTCT
GGCTGTACTTATAGTGCAGTGACCATtatataattatattttataGATAT
TTAAATGAGATTTATCATGTGCTATAGCTCGCTGTTTCAAAATACTACAA
ATTTCGATTTGGTTATTCCTTACCACATTCCTTCTCCACATCATTCCATA
TGATATGTAGGTGATTTTCTGTACTgctattttcaaaagataacCTCAAT
CTTTCAGTTTATGGGAACCTTTACTTGAACACTCCTACTTTTTCACTGCA
GGCACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCGCAACCCT
CCCCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCG
CACATGATCGAACAACAACAGATCAACCATGACGACGAAAACGAATTACC
TTCCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTG
GCAAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAAAAACGTT
AATCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGTCCGGGAA
AACTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCT
TGAAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGTCATCAGT
GATAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGTCCCAAAC
GACGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGACGACGACG
AACATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAAGAAAAAG
GATTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGA
TAGCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGGAAGAGAC
AATCCATTAGACGAGAATCGAGACCAAGGTATGACTCGTTTTCCCAAAGT
TGAAACAACTGAATTATAGTGAGATTATTCTCACTGATTCTGATTTCGAt
acattttgttattttttatatttattttaagGAAAACGTCTTCTTTGTAT
TATTCCAATTGCAAAATCAATCGTTGAAGAACAAGAGTTATTCGGTAGGT
AAACTTTCTCGTAATACTTTTTCCTTATTAGGTCATTTACAGGGGAAAGC
ACACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCACGAAC
GAATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATGTTCC
ATAATCGTTCACCTAGAGTCAGTTCTGGTGAGTGCTAATTGCATTTTCGC
GGTTCATTtctctgttgttttttttacgAGGAAAGTaagagaaaaattga
aacacTTATCAACCTTTAAAGCATTAGAACACTGGGTTCGAGTCTACTAA
GATTAATACAGTTACATTCTCAAAGACAACGAATTCTGACctaatttttc
ttgtaaatttcTTTACCAGTCCCTTCGAAAACAACCGTGCTTTTATGGGT
TGATTGACGTCAAACATTTGAAATGctaagaaaagtgaaaaagaattgat
atttttttagtcACTCGAGCATTAGATATCTGCGAGATAATTGTGCCTGA
GTGGTTGTAATCTTTTAGTATTATGACATACATCAATAATAAGTAACTGA
CTTTCAAATCGTTTAACGCACGTTGAATTTTCTCTTTTAGAACCGAAATT
ACAAGTAACGACACCAACTGACGGAACAGGCAAGAATCCGGTAAGCCCTT
TGAATTCTACATTCAATACTACATACACATTATGCTTAATTTTTGCATTA
TAACTTCACGTAATTTAACGCAGTAACTTcactctattcatgatatttat
gacgtaatgttttcgacggaaacaccccggtttttgccagtagtggcaaa
ttggAGCTAtagaaaaattgctcaaaatttgcCACAACTGGCAAAAATGG
AGgtttttccgtagaaaacattacgtcatgaatatcaagaattctCACTA
TATAATATGCATGTGATTAACATCAATTTTCAGCCACAAAAACCACCACG
CTCAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCCA
CTGCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTCA
CGATCACTTGATGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000722XLOC_000722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001339-exon-sc0000010-1491911889:232709..232973TCONS_00001339-exon-sc0000010-1491911889:232709..232973Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:232709..232973TCONS_00001339-exon-sc0000010-1510915933:232709..232973Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:232709..232973TCONS_00001339-exon-sc0000010-1575043694:232709..232973Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:233925..234100TCONS_00001339-exon-sc0000010-1491911889:233925..234100Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:233925..234100TCONS_00001339-exon-sc0000010-1510915933:233925..234100Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:233925..234100TCONS_00001339-exon-sc0000010-1575043694:233925..234100Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:234702..234765TCONS_00001339-exon-sc0000010-1491911889:234702..234765Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:234702..234765TCONS_00001339-exon-sc0000010-1510915933:234702..234765Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:234702..234765TCONS_00001339-exon-sc0000010-1575043694:234702..234765Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:235289..235425TCONS_00001339-exon-sc0000010-1491911889:235289..235425Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:235289..235425TCONS_00001339-exon-sc0000010-1510915933:235289..235425Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:235289..235425TCONS_00001339-exon-sc0000010-1575043694:235289..235425Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:236005..236093TCONS_00001339-exon-sc0000010-1491911889:236005..236093Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:236005..236093TCONS_00001339-exon-sc0000010-1510915933:236005..236093Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:236005..236093TCONS_00001339-exon-sc0000010-1575043694:236005..236093Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:236404..236433TCONS_00001339-exon-sc0000010-1491911889:236404..236433Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:236404..236433TCONS_00001339-exon-sc0000010-1510915933:236404..236433Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:236404..236433TCONS_00001339-exon-sc0000010-1575043694:236404..236433Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:236710..237386TCONS_00001339-exon-sc0000010-1491911889:236710..237386Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:236710..237386TCONS_00001339-exon-sc0000010-1510915933:236710..237386Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:236710..237386TCONS_00001339-exon-sc0000010-1575043694:236710..237386Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:237590..237735TCONS_00001339-exon-sc0000010-1491911889:237590..237735Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:237590..237735TCONS_00001339-exon-sc0000010-1510915933:237590..237735Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:237590..237735TCONS_00001339-exon-sc0000010-1575043694:237590..237735Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:238149..238198TCONS_00001339-exon-sc0000010-1491911889:238149..238198Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:238149..238198TCONS_00001339-exon-sc0000010-1510915933:238149..238198Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:238149..238198TCONS_00001339-exon-sc0000010-1575043694:238149..238198Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:238492..238625TCONS_00001339-exon-sc0000010-1491911889:238492..238625Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:238492..238625TCONS_00001339-exon-sc0000010-1510915933:238492..238625Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:238492..238625TCONS_00001339-exon-sc0000010-1575043694:238492..238625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:232709..238625 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.06838	0.708784	0.18057	0.366041	0.324568	0	0	0	0	0.487032	1.00329	0	0.0687174	3.13781	5.65991	0.317301	0.421649	2.98632	3.81421	2.13023	1.68606	0.835515	0.671374	3.22626	2.26879	2.93205	1.87288
Blast
[Close]
BLAST of TCONS_00001339 vs. Swiss-Prot (Human)
Match: REPS2 (RalBP1-associated Eps domain-containing protein 2 OS=Homo sapiens GN=REPS2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 6.143e-26
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:  351 NEEMRITQEQREYYTNQFKSLQPNEDDVIKGPQARDFFLKSNLAMETLSKIWHLSDLDKDGALNLEEFQIAMHLVVLIKHGYELPMVLPPSL 626
            +E  RIT+EQREYY NQF+SLQP+    I G  A++FF KS L++  LS IW LSD D DGAL L EF  A HL+V  K+GY LP  LPP+L
Sbjct:  273 DEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTL 364
The following BLAST results are available for this feature:
BLAST of TCONS_00001339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REPS26.143e-2657.61RalBP1-associated Eps domain-containing protein 2 ... [more]
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