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TCONS_00001339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001339
Unique NameTCONS_00001339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001339 ID=TCONS_00001339|Name=TCONS_00001339|organism=Clytia hemisphaerica|type=transcript|length=1768bp
gaaaaaacggtttttaaaaaccctttttttaatCTCTATAAATATAAGAG
TGGCTTATTACTGTGATATTAGAAAAAAAGAGTGCCCTGGACTTGCGTTT
TTGTTGTGATAAGCTATAAAGAGTTAGAGTCAGAGAAAATTTGTCAATGA
AGCAGTGACTTGTATGGGCTTAGATTGAATAATTTATAGAGAATCAAGTG
TTTTTTTGGTTTGGTGCCATGGATGTTCGACAATCTCGTTCAAGACCATA
TTATTCAAGTTATCAGAGAAGCCAAACGGAGAGCATGGCGTCATCCAGCA
TGGCATCCAGTATCCCAGAAAGCACGAGTAGTGTTGACAGTAGTTCCGAC
AATGAAGAAATGAGAATCACGCAAGAACAAAGAGAATATTACACCAACCA
ATTCAAAAGTTTACAACCCAATGAAGACGATGTTATCAAAGGTCCCCAAG
CTCGTGATTTCTTCTTGAAGTCGAATCTAGCGATGGAAACTCTTTCTAAG
ATCTGgCATCTATCAGACTTGGATAAAGATGGCGCATTGAACTTGGAGGA
GTTTCAGATTGCAATGCATCTGGTTGTGTTAATTAAACATGGTTACGAGT
TACCGATGGTTTTACCTCCTTCCCTTCTTGGTCAAGAGCAAGTCCATCAA
ATGGCAAGTCAAGATGGTGTGGATATGAGCGATGAAGATGAGAAATTGAT
TTCTGATGACGAAAAACAAGAATCTGGTGATTGGTCCGCTGAATTTGATG
CTACGGATGGGGCACCAATTGATCGTGGTGAACGTATAGTGCAAACTTAC
GCGCAACCCTCCCCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACA
ACCCGTCTCGCACATGATCGAACAACAACAGATCAACCATGACGACGAAA
ACGAATTACCTTCCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCC
GCGGCGGGTGGCAAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAA
TAAAAACGTTAATCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCAC
CGTCCGGGAAAACTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCG
AAGAAAGCCTTGAAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGG
TGTCATCAGTGATAGCGAAAATAATAAACTGGTCTCGATTGATAATCACA
TGTCCCAAACGACGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTC
GACGACGACGAACATTTGACGGACGACCACGATCACGAACGTTTGAAAGT
CAAGAAAAAGGATTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGC
GTTCGATTGATAGCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAA
TGGAAGAGACAATCCATTAGACGAGAATCGAGACCAAGGTCATTTACAGG
GGAAAGCACACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGC
CACGAACGAATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAA
ATGTTCCATAATCGTTCACCTAGAGTCAGTTCTGAACCGAAATTACAAGT
AACGACACCAACTGACGGAACAGGCAAGAATCCGCCACAAAAACCACCAC
GCTCAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCC
ACTGCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTC
ACGATCACTTGATGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000010:232709..238625+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001339 ID=TCONS_00001339|Name=TCONS_00001339|organism=Clytia hemisphaerica|type=transcript|length=5917bp|location=Sequence derived from alignment at sc0000010:232709..238625+ (Clytia hemisphaerica)
gaaaaaacggtttttaaaaaccctttttttaatCTCTATAAATATAAGAG TGGCTTATTACTGTGATATTAGAAAAAAAGAGTGCCCTGGACTTGCGTTT TTGTTGTGATAAGCTATAAAGAGTTAGAGTCAGAGAAAATTTGTCAATGA AGCAGTGACTTGTATGGGCTTAGATTGAATAATTTATAGAGAATCAAGTG TTTTTTTGGTTTGGTGCCATGGATGTTCGACAATCTCGTTCAAGACCATA TTATTCAAGTTATCAGTAAGTTATTGTAGGGTCAGCTATACACGCTCATG CAATGTTTATATTTTGTCCCCAGAAATTGGGGTCTGTCATTCGTCAACAT TTGATACGTTTTTTCTCCTTTTCAACTTTTAATTCTGGTGGTTCTGCTAC TAGTAAAACAGAGTAAGTTCTTTCGTTTACAGACTACCTGCCACTGAGTT TAAAGTGCTTTTATCGCATTCAAATTTGCTCTGAATGCTTTTCAGTCCAT CTAAAATAAACGTATAATATTAATCAATACCGAGTTTGACCCCTATAATA AAGccggatgagctggagtttttacaagctggGATGCGATTTTCTTTGTG TGTATTTTACGGAACAAGCACACCCGATATGttatactttcaaaaaattc tctaaCCCCAAGttccgaagtcccgagttgaactgtgccaacactctcca aagtataagcctttgaaattttgaggatGGTGACGCCTATTAGAAGGCGG TtctctgaaaaatctttttctttaagAATTCCTTTGATAAGGGGGCCTGG AATTATTTTGGAGAaactgaaattatgacgtcacccgcaaaataactcgg aaaaaataacttgggaaaaaataactcggaaattCCAGGCCCCTTCGATA AGTTTCACTGCACTACGATATTCTAAGTGGCTGAGTCGGTTTTGCTCCAA AAGGTTCTGGAAATGTAGTACAGTAGAGGAAATTTTCCGTTCAAGGAGCT TAGGCATATTTTGTATCAGTAGCATCAATAAGTTCAACATAGTTCGTTTC AATCGatcaaatcaaattcaaaagagGCTATTAATCTCAATATTACCTAC TATGCTTATATCTCTAAGTAGTGGGTAGCTCAAAGGAAGAGCATTCAGCT ACGGTGTGTTCGTGGGCTCAATTTATCGACGGGTCGCAAACTAACTATAT CTCTTTTTCCCTCCAGGAGAAGCCAAACGGAGAGCATGGCGTCATCCAGC ATGGCATCCAGTATCCCAGAAAGCACGAGTAGTGTTGACAGTAGTTCCGA CAATGAAGAAATGAGAATCACGCAAGAACAAAGAGAATATTACACCAACC AATTCAAAAGTTTACAACCCAATGAAGACGATGTTATCAAAGGTAACGAT TATCgcaggaaaaaatctttaaatcacACTCGTGTGAAAACTGATTTCCA AGGGTGAGATTCGGTTCGTTTTCACACTATTTGTTTACACCTTGTTGAAT CAATTATCAAACTAAAAACTCAATCTGGAATCACAATCTGACTTAATTCT TCTTAAATTTGAGGTGTTTTAATCTAATACTTAAATCATCATGGTGTAAA CACTAAGGGTGCTATTTACGATTTCACACCCGTGTGAAAACGAACCGAAT CTCACCCTGTGAAATAAGTTTTCACACGAGTGTGATTTAacgattttttc ctgtgtattaTGATAGTTAATGTTTTTGTCCGAAAAGTTATACGCCCTTA TTTTTCGACCTCGTCCTTCCACAGCCTCAAAGCGTTTAAATAATGATGAA GTTTTGTTAATAATGATGATTCTAGCTCATTAAACTATAACTGATTCTGT TTCAACTACagtgaagtttttttttaactcgctggaacctctataactcg ataGTTTCCTTAAAACGAACAAGTTTGTCTTGGAGACTTCCAATGTATTT GTTTCATATCAAGTTGTATAActcattgaatttttttgtctaGGTCCCCA AGCTCGTGATTTCTTCTTGAAGTCGAATCTAGCGATGGAAACTCTTTCTA AGATCTGGTATGTATGTTTCCCTTGTAGTAATTATCTGTCAATTATAATA TATTACCCCCTCTATACATGTAAGGTCTTCATTCGATTGATCTTAAACAA GCTCATTACAGCTCGCTTTGGTGCTTTCAATTAGAtttgaactttttctt ttcGACGAGATTTGTCAATACAGTGGAAATTTGATTATTGAAACTTGCAT ATATTTCTCTTTCTCAACAACCCTTAggaatttattttattaatcAAAGT TTTATTCAACCTCGTCCCTGTGTAAaacaggctttatttacgttagtgat tgacgccagagaatatcctggtgttggctgatgcgagacTATCATCTCAA AGTGAGAACTTctcaaacaacaaaaaagtgaCGCATTCGAAAAGCAGACA ATGCCAGGGTACTATCTGGGGTTATCAGTAATAAGCATAAATAAcagata atacgcagggaatgAGGTTGTGTTTTATTGACAAATTGTTCACAAATAAT CGAATAACctctttaaattaaaaatttcaggCATCTATCAGACTTGGATA AAGATGGCGCATTGAACTTGGAGGAGTTTCAGATTGCAATGCATCTGGTT GTGTTAATTAAACATGGTTACGAGTTACCGATGGTTTTACCTCCTTCCCT TCTTGGTCAAGAGCAAGGTACGTTGTTAGTCTGCCGTCAAAACATGCCTG GTTATTTTAAAATATCATAATTTGACTTTATCTTTAGATAGTTGATGATT AGCTTAAGGTTTATTTCCATCTCAAACCATTCTAAGGTTGTTGTTTTTTA GTGGTCGCTAACTGGATttctatataatatatattcatgatatgcaccac tgcaatgtcttctgacattacgtcatggaaccaatagctcattggttgga agtgacgtaaaagcagtcaatacgtcactctCAACCAATCAgttattggg tggaacggaagacattgcaatggcgcatatcatgaatagaataTTATTTT TATCTCAAATGTCTCCTAATTGGAACAAGTTAACAATACGTTAtaatata taaaggtcagtggttataccttgactcgaacaaatttgtgttcgcTGCGa agggttcgagttatggatacTCCtctgtaaaatgtttttttttaccaccg ggaATCTAGTATTGTATCCGAATCCATATAATCCGAAAACAGGTGACTTT TTATGTTTCTGTATGACTTTTAAAACTTGTCCTTTCATTATGTCAGTCCA TCAAATGGCAAGTCAAGATGGTGTGGATATGAGCGATGAAGATGAGAAAT TGATTTCTGATGACGAAAAACAAGAATCTGGTGATGTACGTAACGCTCTT TACGTCTTGCTATTTACATATTATGGAACACGATAGAGTTTCAATAGTAT TCCAAGATAATTAAGATAATATTATCCCGAATAGTTACTCCTTCTCGGTT TATAATCCGCTAAAAGTGGTGAATTTTGACAACTCAGAGAAATTGAAAGG TTTTCCTTCACTCCGCTTTTACCATGGGATTAAAAACTGTAGACGTACAG AGGAGACAAAAACGTTCTGACGATTCGCGGATAGGATATAGCGCTAGAAG TGTTGTATAGGGTATCTTATAAAACTGTTTCTCCTTTATTTCTAGTGGTC CGCTGAATTTGATGCTACGGATGGGGTGAGTTGATTTATGGTTTAGGTCT GGCTGTACTTATAGTGCAGTGACCATtatataattatattttataGATAT TTAAATGAGATTTATCATGTGCTATAGCTCGCTGTTTCAAAATACTACAA ATTTCGATTTGGTTATTCCTTACCACATTCCTTCTCCACATCATTCCATA TGATATGTAGGTGATTTTCTGTACTgctattttcaaaagataacCTCAAT CTTTCAGTTTATGGGAACCTTTACTTGAACACTCCTACTTTTTCACTGCA GGCACCAATTGATCGTGGTGAACGTATAGTGCAAACTTACGCGCAACCCT CCCCTACGTCCGTCACCGTGCCGTCAGAAACTCGCGTACAACCCGTCTCG CACATGATCGAACAACAACAGATCAACCATGACGACGAAAACGAATTACC TTCCTCGCCTGGTGCCTTGGCTTCTCCTAACGATGTCGCCGCGGCGGGTG GCAAAATGACAGCTATCGCACGACCCCGTGTAACCGCTAATAAAAACGTT AATCTGATGGATGCGTCACCATGGCAGCTCCTGCCACCACCGTCCGGGAA AACTGGCAAATTCGGTGGCCCGAATGGTGGTACAACCGCGAAGAAAGCCT TGAAAATGGATAGTGTTGATAGTGAATTAGACTCGGCGGGTGTCATCAGT GATAGCGAAAATAATAAACTGGTCTCGATTGATAATCACATGTCCCAAAC GACGTCGCCGACAAATGGCGACAGTAGTCTGGATAACCTCGACGACGACG AACATTTGACGGACGACCACGATCACGAACGTTTGAAAGTCAAGAAAAAG GATTCGGCATATTTCAGGAATTTGTCAAAAGAGAAATCGCGTTCGATTGA TAGCTTACGGTCAGATATTTCGGAGAGTAGCATGTTTGAATGGAAGAGAC AATCCATTAGACGAGAATCGAGACCAAGGTATGACTCGTTTTCCCAAAGT TGAAACAACTGAATTATAGTGAGATTATTCTCACTGATTCTGATTTCGAt acattttgttattttttatatttattttaagGAAAACGTCTTCTTTGTAT TATTCCAATTGCAAAATCAATCGTTGAAGAACAAGAGTTATTCGGTAGGT AAACTTTCTCGTAATACTTTTTCCTTATTAGGTCATTTACAGGGGAAAGC ACACACGACACACCGCAATTCGAATCACCGCCCGTCCCACCGCCACGAAC GAATAAAGGACACGCCAGGGCGTCATCACTCGATTTTAATCAAATGTTCC ATAATCGTTCACCTAGAGTCAGTTCTGGTGAGTGCTAATTGCATTTTCGC GGTTCATTtctctgttgttttttttacgAGGAAAGTaagagaaaaattga aacacTTATCAACCTTTAAAGCATTAGAACACTGGGTTCGAGTCTACTAA GATTAATACAGTTACATTCTCAAAGACAACGAATTCTGACctaatttttc ttgtaaatttcTTTACCAGTCCCTTCGAAAACAACCGTGCTTTTATGGGT TGATTGACGTCAAACATTTGAAATGctaagaaaagtgaaaaagaattgat atttttttagtcACTCGAGCATTAGATATCTGCGAGATAATTGTGCCTGA GTGGTTGTAATCTTTTAGTATTATGACATACATCAATAATAAGTAACTGA CTTTCAAATCGTTTAACGCACGTTGAATTTTCTCTTTTAGAACCGAAATT ACAAGTAACGACACCAACTGACGGAACAGGCAAGAATCCGGTAAGCCCTT TGAATTCTACATTCAATACTACATACACATTATGCTTAATTTTTGCATTA TAACTTCACGTAATTTAACGCAGTAACTTcactctattcatgatatttat gacgtaatgttttcgacggaaacaccccggtttttgccagtagtggcaaa ttggAGCTAtagaaaaattgctcaaaatttgcCACAACTGGCAAAAATGG AGgtttttccgtagaaaacattacgtcatgaatatcaagaattctCACTA TATAATATGCATGTGATTAACATCAATTTTCAGCCACAAAAACCACCACG CTCAAATCCACCAAGCACTTCTTCAACTAATAACTCGTCTGCCGCCCCCA CTGCTGCAGCCCGCCCTCGTTCGTCCAAGGGTGATGAATATCATAGGTCA CGATCACTTGATGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000722XLOC_000722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001339-exon-sc0000010-1491911889:232709..232973TCONS_00001339-exon-sc0000010-1491911889:232709..232973Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:232709..232973TCONS_00001339-exon-sc0000010-1510915933:232709..232973Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:232709..232973TCONS_00001339-exon-sc0000010-1575043694:232709..232973Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:233925..234100TCONS_00001339-exon-sc0000010-1491911889:233925..234100Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:233925..234100TCONS_00001339-exon-sc0000010-1510915933:233925..234100Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:233925..234100TCONS_00001339-exon-sc0000010-1575043694:233925..234100Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:234702..234765TCONS_00001339-exon-sc0000010-1491911889:234702..234765Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:234702..234765TCONS_00001339-exon-sc0000010-1510915933:234702..234765Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:234702..234765TCONS_00001339-exon-sc0000010-1575043694:234702..234765Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:235289..235425TCONS_00001339-exon-sc0000010-1491911889:235289..235425Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:235289..235425TCONS_00001339-exon-sc0000010-1510915933:235289..235425Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:235289..235425TCONS_00001339-exon-sc0000010-1575043694:235289..235425Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:236005..236093TCONS_00001339-exon-sc0000010-1491911889:236005..236093Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:236005..236093TCONS_00001339-exon-sc0000010-1510915933:236005..236093Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:236005..236093TCONS_00001339-exon-sc0000010-1575043694:236005..236093Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:236404..236433TCONS_00001339-exon-sc0000010-1491911889:236404..236433Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:236404..236433TCONS_00001339-exon-sc0000010-1510915933:236404..236433Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:236404..236433TCONS_00001339-exon-sc0000010-1575043694:236404..236433Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:236710..237386TCONS_00001339-exon-sc0000010-1491911889:236710..237386Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:236710..237386TCONS_00001339-exon-sc0000010-1510915933:236710..237386Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:236710..237386TCONS_00001339-exon-sc0000010-1575043694:236710..237386Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:237590..237735TCONS_00001339-exon-sc0000010-1491911889:237590..237735Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:237590..237735TCONS_00001339-exon-sc0000010-1510915933:237590..237735Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:237590..237735TCONS_00001339-exon-sc0000010-1575043694:237590..237735Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:238149..238198TCONS_00001339-exon-sc0000010-1491911889:238149..238198Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:238149..238198TCONS_00001339-exon-sc0000010-1510915933:238149..238198Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:238149..238198TCONS_00001339-exon-sc0000010-1575043694:238149..238198Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1491911889:238492..238625TCONS_00001339-exon-sc0000010-1491911889:238492..238625Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1510915933:238492..238625TCONS_00001339-exon-sc0000010-1510915933:238492..238625Clytia hemisphaericaexon
TCONS_00001339-exon-sc0000010-1575043694:238492..238625TCONS_00001339-exon-sc0000010-1575043694:238492..238625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:232709..238625 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 1.06838 0.708784 0.18057 0.366041 0.324568 0 0 0 0 0.487032 1.00329 0 0.0687174 3.13781 5.65991 0.317301 0.421649 2.98632 3.81421 2.13023 1.68606 0.835515 0.671374 3.22626 2.26879 2.93205 1.87288
Blast
BLAST of TCONS_00001339 vs. Swiss-Prot (Human)
Match: REPS2 (RalBP1-associated Eps domain-containing protein 2 OS=Homo sapiens GN=REPS2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 6.143e-26
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  351 NEEMRITQEQREYYTNQFKSLQPNEDDVIKGPQARDFFLKSNLAMETLSKIWHLSDLDKDGALNLEEFQIAMHLVVLIKHGYELPMVLPPSL 626
            +E  RIT+EQREYY NQF+SLQP+    I G  A++FF KS L++  LS IW LSD D DGAL L EF  A HL+V  K+GY LP  LPP+L
Sbjct:  273 DEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTL 364          
The following BLAST results are available for this feature:
BLAST of TCONS_00001339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REPS26.143e-2657.61RalBP1-associated Eps domain-containing protein 2 ... [more]
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