TCONS_00001308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001308
Unique NameTCONS_00001308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001308 ID=TCONS_00001308|Name=TCONS_00001308|organism=Clytia hemisphaerica|type=transcript|length=414bp
GTGAGCAGGCGAAGAAATGATGGTCGTGGACAAtcctttttcaatatttc
tggCAATTTGACAACTTCTGTTTATGGTTCAAAAGATTGCTAAAAGTGGA
GGATGCAAGTAAAAAGATTATAGAAGAGTAAGTGgcaaaaaatttcttct
ttctgTTTGTTTTCATACAGTAGTGTAACGTAACACAGGCTCGCAAACCT
AGCGCtctaaagaaaatttgtttcttGTTGCATTTTGGTTTCTGAACATC
CTGGTTTTTTCTTCCACCGCTGATTTTGTCCACCGTTCATTTTCCATTTC
GAAGTTTTGAGTGTTCTCTTTCGACTTTTGGTTTaagcttttcattctat
tttgcAAACAATTAGACACAAGAAATCAAGACTTCTTGAGATAGGCAATA
AAAGAAGGCCTTCT
Run BLAST on NCBI

transcript from alignment at sc0000007:1442254..1442667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001308 ID=TCONS_00001308|Name=TCONS_00001308|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000007:1442254..1442667 (Clytia hemisphaerica)
AGAAGGCCTTCTTTTATTGCCTATCTCAAGAAGTCTTGATTTCTTGTGTC
TAATTGTTTgcaaaatagaatgaaaagcttAAACCAAAAGTCGAAAGAGA
ACACTCAAAACTTCGAAATGGAAAATGAACGGTGGACAAAATCAGCGGTG
GAAGAAAAAACCAGGATGTTCAGAAACCAAAATGCAACaagaaacaaatt
ttctttagaGCGCTAGGTTTGCGAGCCTGTGTTACGTTACACTACTGTAT
GAAAACAAAcagaaagaagaaattttttgcCACTTACTCTTCTATAATCT
TTTTACTTGCATCCTCCACTTTTAGCAATCTTTTGAACCATAAACAGAAG
TTGTCAAATTGccagaaatattgaaaaaggaTTGTCCACGACCATCATTT
CTTCGCCTGCTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000712XLOC_000712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001308-exon-sc0000007-1491911889:1442254..1442667TCONS_00001308-exon-sc0000007-1491911889:1442254..1442667Clytia hemisphaericaexon
TCONS_00001308-exon-sc0000007-1510915933:1442254..1442667TCONS_00001308-exon-sc0000007-1510915933:1442254..1442667Clytia hemisphaericaexon
TCONS_00001308-exon-sc0000007-1575043694:1442254..1442667TCONS_00001308-exon-sc0000007-1575043694:1442254..1442667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1442254..1442667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09387	1.31722	0.511109	0.184788	0.457587	0.416103	0.444997	0.208301	0.764472	0.20964	2.07456	0.420204	0.281062	1.53144	0	0	0.0476113	1.62336e-06	0	0	0	1.40646	0.74288	0	1.17265	1.08471	0	0	0	0.0990615
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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