TCONS_00001303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001303
Unique NameTCONS_00001303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001303 ID=TCONS_00001303|Name=TCONS_00001303|organism=Clytia hemisphaerica|type=transcript|length=427bp
ATTGGTTAATTGACTTTGGTGGGGAGTGTGAAATGATTATATCTTTTCAT
TAAAgtaattatcaattttattaCGCTCgcaatttgttttcattttatgt
ctagcaattatgacgtcatctcaGTTTAGTATCATTTTTATGTCTCTAGG
GtaattatatattttgataaaagcgATGTGCAGTGAAACTTTCTTGCTCA
ATGAAATCAGTTTTTAATAAGAGACGTATGAGAAAGGTTGTGTGTGTGTT
TACACGTTTCAAAACGCCTTTTTGACTCCAGGAAACTTGGTCGCCAAAGT
TATGCTTGGTAAAGCATAATTCAAGTTTCCAACATCAACAACAACTCTGG
TTGTGCATGCTGGTAAGCTTCTATCCTTTGTTTGTTTCTCTGCTTTTTGC
TTGTGTCCTTTCACTGCACTGCTTAGC
Run BLAST on NCBI

transcript from alignment at sc0000007:1045107..1045533

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001303 ID=TCONS_00001303|Name=TCONS_00001303|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at sc0000007:1045107..1045533 (Clytia hemisphaerica)
GCTAAGCAGTGCAGTGAAAGGACACAAGCAAAAAGCAGAGAAACAAACAA
AGGATAGAAGCTTACCAGCATGCACAACCAGAGTTGTTGTTGATGTTGGA
AACTTGAATTATGCTTTACCAAGCATAACTTTGGCGACCAAGTTTCCTGG
AGTCAAAAAGGCGTTTTGAAACGTGTAAACACACACACAACCTTTCTCAT
ACGTCTCTTATTAAAAACTGATTTCATTGAGCAAGAAAGTTTCACTGCAC
ATcgcttttatcaaaatatataattaCCCTAGAGACATAAAAATGATACT
AAACtgagatgacgtcataattgctagacataaaatgaaaacaaattgcG
AGCGtaataaaattgataattacTTTAATGAAAAGATATAATCATTTCAC
ACTCCCCACCAAAGTCAATTAACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000707XLOC_000707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001303-exon-sc0000007-1491911889:1045107..1045533TCONS_00001303-exon-sc0000007-1491911889:1045107..1045533Clytia hemisphaericaexon
TCONS_00001303-exon-sc0000007-1510915933:1045107..1045533TCONS_00001303-exon-sc0000007-1510915933:1045107..1045533Clytia hemisphaericaexon
TCONS_00001303-exon-sc0000007-1575043694:1045107..1045533TCONS_00001303-exon-sc0000007-1575043694:1045107..1045533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1045107..1045533 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12087	0	0	0.699493	0.958326	0.323219	0.993849	0.74283	0.192461	0.252319	0	0.758619	0	0.232692	0.109484	0.565713	0	0.249653	0	0.410683	0.919283	0.476941	0	0.453083	0	0	0.243046	1.10557	0.494481	0.355691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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