TCONS_00001302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001302
Unique NameTCONS_00001302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001302 ID=TCONS_00001302|Name=TCONS_00001302|organism=Clytia hemisphaerica|type=transcript|length=1037bp
atttataaagattgaagaattccttcaaaagttataggtgaaagaaaaaa
gagtgcacacttatcgtgaatagactttaattaaCAACATAAAATTCTCT
AACAATATGTCTGGTTTCATCAAGatgataaaatatcaaaatcatctGTT
TTAAAGTACCCGACACAATGGGcttattgttttgaatattacACCAGAGT
TTCATTGAAGCAAGAGCAATCACCACAAATGTCTACAGTTTTCGGAGCTA
AAATCTCAAGACTTAGTGTTTCTCAGCAATAGAGAGGTCTGTTTACCGTA
TGAAGGTTTTTCAAAGCTTTGATGTTGGCTCCTTTGTCTCGTTTCATGTA
CCTCAAAATTGTGTGCATGTCTCTGCTCTGCCCTCGCTTGAAGAAACCTC
ACTACCTCTCCAAACATAGCCAAATTTTTCACTCGTATGAACTGTAAGTA
CTCGATTTCACGGATAGTGAGATTTCTACGCACCCTCTTGACGATATTTC
GTGTATTCCGTGATACGTTTCGTGATTCTCTACACGAAAGCATGATGTAA
GAGAGTGAAAACATGTTGATTATGACGCCAATGTTTGAAATGACAATACT
GATGATTAACAGGAACCAAAGAACCACCAACACGTATTGGTACAAAATAT
GAGGGCTTATCTCGCAAATGAACTTGTTGTAATTCGTGAATGAGTGTCTA
ACGTCCTTCACACCTTCTGTGATATCACAGAGCCCCATCGCTGGTAATAA
CATATTCCCTGGTTTTGGGTGAGCGCGCGTACGTGTGTAAGCGAACGCCA
ACGAATTGTTCAATTTCGACCATTTGAGCCATTCAAGACCGTATGATTTG
AAGTTACCGTTTAGTAGATCGTCTGTGAAAACGAAGCTCATGACATTGAC
TAGAACGTAGAATATTTTCACGCAAACATTCAATCCCACACGCATGCGTA
GTTTTCCTTTCCCGCCGTTCATTGAGTAGTCGAAGTAATTTTGAACAAGT
TTTTCGGCAGTAGTGTCACTTGGGGCTTTCAGGTTGT
Run BLAST on NCBI

protein sequence of TCONS_00001302-protein

>TCONS_00001302-protein ID=TCONS_00001302-protein|Name=TCONS_00001302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
NLKAPSDTTAEKLVQNYFDYSMNGGKGKLRMRVGLNVCVKIFYVLVNVMS
FVFTDDLLNGNFKSYGLEWLKWSKLNNSLAFAYTRTRAHPKPGNMLLPAM
GLCDITEGVKDVRHSFTNYNKFICEISPHILYQYVLVVLWFLLIISIVIS
NIGVIINMFSLSYIMLSCRESRNVSRNTRNIVKRVRRNLTIREIEYLQFI
RVKNLAMFGEVVRFLQARAEQRHAHNFEVHETRQRSQHQSFEKPSYGKQT
SLLLRNTKS
Run BLAST on NCBI

transcript from alignment at sc0000007:1011695..1012731

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001302 ID=TCONS_00001302|Name=TCONS_00001302|organism=Clytia hemisphaerica|type=transcript|length=1037bp|location=Sequence derived from alignment at sc0000007:1011695..1012731 (Clytia hemisphaerica)
ACAACCTGAAAGCCCCAAGTGACACTACTGCCGAAAAACTTGTTCAAAAT TACTTCGACTACTCAATGAACGGCGGGAAAGGAAAACTACGCATGCGTGT GGGATTGAATGTTTGCGTGAAAATATTCTACGTTCTAGTCAATGTCATGA GCTTCGTTTTCACAGACGATCTACTAAACGGTAACTTCAAATCATACGGT CTTGAATGGCTCAAATGGTCGAAATTGAACAATTCGTTGGCGTTCGCTTA CACACGTACGCGCGCTCACCCAAAACCAGGGAATATGTTATTACCAGCGA TGGGGCTCTGTGATATCACAGAAGGTGTGAAGGACGTTAGACACTCATTC ACGAATTACAACAAGTTCATTTGCGAGATAAGCCCTCATATTTTGTACCA ATACGTGTTGGTGGTTCTTTGGTTCCTGTTAATCATCAGTATTGTCATTT CAAACATTGGCGTCATAATCAACATGTTTTCACTCTCTTACATCATGCTT TCGTGTAGAGAATCACGAAACGTATCACGGAATACACGAAATATCGTCAA GAGGGTGCGTAGAAATCTCACTATCCGTGAAATCGAGTACTTACAGTTCA TACGAGTGAAAAATTTGGCTATGTTTGGAGAGGTAGTGAGGTTTCTTCAA GCGAGGGCAGAGCAGAGACATGCACACAATTTTGAGGTACATGAAACGAG ACAAAGGAGCCAACATCAAAGCTTTGAAAAACCTTCATACGGTAAACAGA CCTCTCTATTGCTGAGAAACACTAAGTCTTGAGATTTTAGCTCCGAAAAC TGTAGACATTTGTGGTGATTGCTCTTGCTTCAATGAAACTCTGGTgtaat attcaaaacaataagCCCATTGTGTCGGGTACTTTAAAACagatgatttt gatattttatcatCTTGATGAAACCAGACATATTGTTAGAGAATTTTATG TTGttaattaaagtctattcacgataagtgtgcactcttttttctttcac ctataacttttgaaggaattcttcaatctttataaat

Coding sequence (CDS) from alignment at sc0000007:1011695..1012731

>TCONS_00001302 ID=TCONS_00001302|Name=TCONS_00001302|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000007:1011695..1012731 (Clytia hemisphaerica)
AACCTGAAAGCCCCAAGTGACACTACTGCCGAAAAACTTGTTCAAAATTA
CTTCGACTACTCAATGAACGGCGGGAAAGGAAAACTACGCATGCGTGTGG
GATTGAATGTTTGCGTGAAAATATTCTACGTTCTAGTCAATGTCATGAGC
TTCGTTTTCACAGACGATCTACTAAACGGTAACTTCAAATCATACGGTCT
TGAATGGCTCAAATGGTCGAAATTGAACAATTCGTTGGCGTTCGCTTACA
CACGTACGCGCGCTCACCCAAAACCAGGGAATATGTTATTACCAGCGATG
GGGCTCTGTGATATCACAGAAGGTGTGAAGGACGTTAGACACTCATTCAC
GAATTACAACAAGTTCATTTGCGAGATAAGCCCTCATATTTTGTACCAAT
ACGTGTTGGTGGTTCTTTGGTTCCTGTTAATCATCAGTATTGTCATTTCA
AACATTGGCGTCATAATCAACATGTTTTCACTCTCTTACATCATGCTTTC
GTGTAGAGAATCACGAAACGTATCACGGAATACACGAAATATCGTCAAGA
GGGTGCGTAGAAATCTCACTATCCGTGAAATCGAGTACTTACAGTTCATA
CGAGTGAAAAATTTGGCTATGTTTGGAGAGGTAGTGAGGTTTCTTCAAGC
GAGGGCAGAGCAGAGACATGCACACAATTTTGAGGTACATGAAACGAGAC
AAAGGAGCCAACATCAAAGCTTTGAAAAACCTTCATACGGTAAACAGACC
TCTCTATTGCTGAGAAACACTAAGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000706XLOC_000706Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001302-proteinTCONS_00001302-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001302-exon-sc0000007-1491911889:1011695..1012731TCONS_00001302-exon-sc0000007-1491911889:1011695..1012731Clytia hemisphaericaexon
TCONS_00001302-exon-sc0000007-1510915933:1011695..1012731TCONS_00001302-exon-sc0000007-1510915933:1011695..1012731Clytia hemisphaericaexon
TCONS_00001302-exon-sc0000007-1575043694:1011695..1012731TCONS_00001302-exon-sc0000007-1575043694:1011695..1012731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1011695..1012731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109218 0.117452 0.277618 0.142636 0.305268 0.182761 0.276248 0.418907 0.240404 0.379357 0.293846 0.265444 0.172076 0.118812 0.198997 0.31882 1.54353 2.02965 0.0456535 0.192809 3.481 3.10372 0.495505 0.853422 0.602448 1.02 0.641142 0.59524 0.324316 0.337168
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: Cellular Component
TermDefinition
GO:0005921gap junction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005921 gap junction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top