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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001302 ID=TCONS_00001302|Name=TCONS_00001302|organism=Clytia hemisphaerica|type=transcript|length=1037bp
atttataaagattgaagaattccttcaaaagttataggtgaaagaaaaaa
gagtgcacacttatcgtgaatagactttaattaaCAACATAAAATTCTCT
AACAATATGTCTGGTTTCATCAAGatgataaaatatcaaaatcatctGTT
TTAAAGTACCCGACACAATGGGcttattgttttgaatattacACCAGAGT
TTCATTGAAGCAAGAGCAATCACCACAAATGTCTACAGTTTTCGGAGCTA
AAATCTCAAGACTTAGTGTTTCTCAGCAATAGAGAGGTCTGTTTACCGTA
TGAAGGTTTTTCAAAGCTTTGATGTTGGCTCCTTTGTCTCGTTTCATGTA
CCTCAAAATTGTGTGCATGTCTCTGCTCTGCCCTCGCTTGAAGAAACCTC
ACTACCTCTCCAAACATAGCCAAATTTTTCACTCGTATGAACTGTAAGTA
CTCGATTTCACGGATAGTGAGATTTCTACGCACCCTCTTGACGATATTTC
GTGTATTCCGTGATACGTTTCGTGATTCTCTACACGAAAGCATGATGTAA
GAGAGTGAAAACATGTTGATTATGACGCCAATGTTTGAAATGACAATACT
GATGATTAACAGGAACCAAAGAACCACCAACACGTATTGGTACAAAATAT
GAGGGCTTATCTCGCAAATGAACTTGTTGTAATTCGTGAATGAGTGTCTA
ACGTCCTTCACACCTTCTGTGATATCACAGAGCCCCATCGCTGGTAATAA
CATATTCCCTGGTTTTGGGTGAGCGCGCGTACGTGTGTAAGCGAACGCCA
ACGAATTGTTCAATTTCGACCATTTGAGCCATTCAAGACCGTATGATTTG
AAGTTACCGTTTAGTAGATCGTCTGTGAAAACGAAGCTCATGACATTGAC
TAGAACGTAGAATATTTTCACGCAAACATTCAATCCCACACGCATGCGTA
GTTTTCCTTTCCCGCCGTTCATTGAGTAGTCGAAGTAATTTTGAACAAGT
TTTTCGGCAGTAGTGTCACTTGGGGCTTTCAGGTTGT Run BLAST on NCBI protein sequence of TCONS_00001302-protein >TCONS_00001302-protein ID=TCONS_00001302-protein|Name=TCONS_00001302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
NLKAPSDTTAEKLVQNYFDYSMNGGKGKLRMRVGLNVCVKIFYVLVNVMS
FVFTDDLLNGNFKSYGLEWLKWSKLNNSLAFAYTRTRAHPKPGNMLLPAM
GLCDITEGVKDVRHSFTNYNKFICEISPHILYQYVLVVLWFLLIISIVIS
NIGVIINMFSLSYIMLSCRESRNVSRNTRNIVKRVRRNLTIREIEYLQFI
RVKNLAMFGEVVRFLQARAEQRHAHNFEVHETRQRSQHQSFEKPSYGKQT
SLLLRNTKS Run BLAST on NCBI transcript from alignment at sc0000007:1011695..1012731 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001302 ID=TCONS_00001302|Name=TCONS_00001302|organism=Clytia hemisphaerica|type=transcript|length=1037bp|location=Sequence derived from alignment at sc0000007:1011695..1012731 (Clytia hemisphaerica)
ACAACCTGAAAGCCCCAAGTGACACTACTGCCGAAAAACTTGTTCAAAAT
TACTTCGACTACTCAATGAACGGCGGGAAAGGAAAACTACGCATGCGTGT
GGGATTGAATGTTTGCGTGAAAATATTCTACGTTCTAGTCAATGTCATGA
GCTTCGTTTTCACAGACGATCTACTAAACGGTAACTTCAAATCATACGGT
CTTGAATGGCTCAAATGGTCGAAATTGAACAATTCGTTGGCGTTCGCTTA
CACACGTACGCGCGCTCACCCAAAACCAGGGAATATGTTATTACCAGCGA
TGGGGCTCTGTGATATCACAGAAGGTGTGAAGGACGTTAGACACTCATTC
ACGAATTACAACAAGTTCATTTGCGAGATAAGCCCTCATATTTTGTACCA
ATACGTGTTGGTGGTTCTTTGGTTCCTGTTAATCATCAGTATTGTCATTT
CAAACATTGGCGTCATAATCAACATGTTTTCACTCTCTTACATCATGCTT
TCGTGTAGAGAATCACGAAACGTATCACGGAATACACGAAATATCGTCAA
GAGGGTGCGTAGAAATCTCACTATCCGTGAAATCGAGTACTTACAGTTCA
TACGAGTGAAAAATTTGGCTATGTTTGGAGAGGTAGTGAGGTTTCTTCAA
GCGAGGGCAGAGCAGAGACATGCACACAATTTTGAGGTACATGAAACGAG
ACAAAGGAGCCAACATCAAAGCTTTGAAAAACCTTCATACGGTAAACAGA
CCTCTCTATTGCTGAGAAACACTAAGTCTTGAGATTTTAGCTCCGAAAAC
TGTAGACATTTGTGGTGATTGCTCTTGCTTCAATGAAACTCTGGTgtaat
attcaaaacaataagCCCATTGTGTCGGGTACTTTAAAACagatgatttt
gatattttatcatCTTGATGAAACCAGACATATTGTTAGAGAATTTTATG
TTGttaattaaagtctattcacgataagtgtgcactcttttttctttcac
ctataacttttgaaggaattcttcaatctttataaat Coding sequence (CDS) from alignment at sc0000007:1011695..1012731 >TCONS_00001302 ID=TCONS_00001302|Name=TCONS_00001302|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000007:1011695..1012731 (Clytia hemisphaerica)
AACCTGAAAGCCCCAAGTGACACTACTGCCGAAAAACTTGTTCAAAATTA
CTTCGACTACTCAATGAACGGCGGGAAAGGAAAACTACGCATGCGTGTGG
GATTGAATGTTTGCGTGAAAATATTCTACGTTCTAGTCAATGTCATGAGC
TTCGTTTTCACAGACGATCTACTAAACGGTAACTTCAAATCATACGGTCT
TGAATGGCTCAAATGGTCGAAATTGAACAATTCGTTGGCGTTCGCTTACA
CACGTACGCGCGCTCACCCAAAACCAGGGAATATGTTATTACCAGCGATG
GGGCTCTGTGATATCACAGAAGGTGTGAAGGACGTTAGACACTCATTCAC
GAATTACAACAAGTTCATTTGCGAGATAAGCCCTCATATTTTGTACCAAT
ACGTGTTGGTGGTTCTTTGGTTCCTGTTAATCATCAGTATTGTCATTTCA
AACATTGGCGTCATAATCAACATGTTTTCACTCTCTTACATCATGCTTTC
GTGTAGAGAATCACGAAACGTATCACGGAATACACGAAATATCGTCAAGA
GGGTGCGTAGAAATCTCACTATCCGTGAAATCGAGTACTTACAGTTCATA
CGAGTGAAAAATTTGGCTATGTTTGGAGAGGTAGTGAGGTTTCTTCAAGC
GAGGGCAGAGCAGAGACATGCACACAATTTTGAGGTACATGAAACGAGAC
AAAGGAGCCAACATCAAAGCTTTGAAAAACCTTCATACGGTAAACAGACC
TCTCTATTGCTGAGAAACACTAAGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001302-exon-sc0000007-1491911889:1011695..1012731 | TCONS_00001302-exon-sc0000007-1491911889:1011695..1012731 | Clytia hemisphaerica | exon |
| TCONS_00001302-exon-sc0000007-1510915933:1011695..1012731 | TCONS_00001302-exon-sc0000007-1510915933:1011695..1012731 | Clytia hemisphaerica | exon |
| TCONS_00001302-exon-sc0000007-1575043694:1011695..1012731 | TCONS_00001302-exon-sc0000007-1575043694:1011695..1012731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1011695..1012731 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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