TCONS_00001300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001300
Unique NameTCONS_00001300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001300 ID=TCONS_00001300|Name=TCONS_00001300|organism=Clytia hemisphaerica|type=transcript|length=1140bp
GTGTATTCTAGTCTGAGAAGTTGGGGGCTGGAAGGCTGGAGTTTGAATTG
AAGCTCGATTGTACGATCATGAGAAAATTTTACCCACGACTAATAATTgt
tatgaaatattttgaagtatTTACGTTAATCGAACAACCGGTCAAACTGG
TTTAAGTTGtattattttgaaatacagagtatAGTTTGCGGTGTACAGCT
GTCCGACGCGCAAGGCCTAAATTTAGCATTGAGCAGGTCGAATGTAAATG
TTTATATTGGAAAGTGTATTGTTATGAGGCAGAATGATGTGGAGAGgaga
aaatgactaaaaataaTGATTTAGGGAGGTCTTTATCTCCACCAAACTTA
TCACAAGTCTGTTCCTGTCATTTACATAATCATCCAGTACAAAAacataa
aacttgaaaaaatcttACCGCTGAGGGTGGAAGAGAGGGAACTTCATATA
AAAGCATGCTGTTACCCTTATTAATTTCATAAACATTACAGACACCAAGT
AATAACATTCAAATGGAAATTTCCGATGGAGTATGAACTGTGAgtgaaaa
tatttataatttttcaacGAGGGTATGCAAAAAGAGCAGCAAGTATCTGC
AAACATTACCTCGAGGTGGATGACGTTTACATACAGCGAGTAGGTACAGA
AGCTCAAGATAGTTTGAGAGGTACTGAACCTTAGTTTAGATAGAGTATAG
GTATTCAAAGCTGTTTTAATTCTTGACCCTTTCTAGGAGATGAGATACCA
GGTATTTCTGACATGAGACTTTCAAAACGATCTCCATCTTAAGAAGTAAG
CTTCCTAGAAGATTTAGTAAGTCACCAATGGAATATCGAGTTGTAACGAA
ATGTCGCCGTACCCGATAAACGATCGTTTAATGCGAGACATCGGACGATA
TTatactttttcaaaaagtgcagGAGTTTCAACGTTCAATTAACTGATTA
AAATCAAGCCCAATAGAGCTTGCAATTAAACGActttaaaaatttacaat
gGAGGGTTTTTCGGATCCATGGGGatctttttcaataatttataAACAGA
CAAAGTTGGAAATGAATGATTACGTGAAAAACCTTGCTGAGTGAGGAGGG
TCCATTCAACAAATAGTCTTTTCATCCACTGCTTTGCCAT
Run BLAST on NCBI

transcript from alignment at sc0000007:949293..950432

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001300 ID=TCONS_00001300|Name=TCONS_00001300|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at sc0000007:949293..950432 (Clytia hemisphaerica)
ATGGCAAAGCAGTGGATGAAAAGACTATTTGTTGAATGGACCCTCCTCAC TCAGCAAGGTTTTTCACGTAATCATTCATTTCCAACTTTGTCTGTTtata aattattgaaaaagatCCCCATGGATCCGAAAAACCCTCcattgtaaatt tttaaagTCGTTTAATTGCAAGCTCTATTGGGCTTGATTTTAATCAGTTA ATTGAACGTTGAAACTCctgcactttttgaaaaagtatAATATCGTCCGA TGTCTCGCATTAAACGATCGTTTATCGGGTACGGCGACATTTCGTTACAA CTCGATATTCCATTGGTGACTTACTAAATCTTCTAGGAAGCTTACTTCTT AAGATGGAGATCGTTTTGAAAGTCTCATGTCAGAAATACCTGGTATCTCA TCTCCTAGAAAGGGTCAAGAATTAAAACAGCTTTGAATACCTATACTCTA TCTAAACTAAGGTTCAGTACCTCTCAAACTATCTTGAGCTTCTGTACCTA CTCGCTGTATGTAAACGTCATCCACCTCGAGGTAATGTTTGCAGATACTT GCTGCTCTTTTTGCATACCCTCgttgaaaaattataaatattttcacTCA CAGTTCATACTCCATCGGAAATTTCCATTTGAATGTTATTACTTGGTGTC TGTAATGTTTATGAAATTAATAAGGGTAACAGCATGCTTTTATATGAAGT TCCCTCTCTTCCACCCTCAGCGGTaagattttttcaagttttatgtTTTT GTACTGGATGATTATGTAAATGACAGGAACAGACTTGTGATAAGTTTGGT GGAGATAAAGACCTCCCTAAATCAttatttttagtcattttctcCTCTCC ACATCATTCTGCCTCATAACAATACACTTTCCAATATAAACATTTACATT CGACCTGCTCAATGCTAAATTTAGGCCTTGCGCGTCGGACAGCTGTACAC CGCAAACTatactctgtatttcaaaataataCAACTTAAACCAGTTTGAC CGGTTGTTCGATTAACGTAAatacttcaaaatatttcataacAATTATTA GTCGTGGGTAAAATTTTCTCATGATCGTACAATCGAGCTTCAATTCAAAC TCCAGCCTTCCAGCCCCCAACTTCTCAGACTAGAATACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000704XLOC_000704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001300-exon-sc0000007-1491911889:949293..950432TCONS_00001300-exon-sc0000007-1491911889:949293..950432Clytia hemisphaericaexon
TCONS_00001300-exon-sc0000007-1510915933:949293..950432TCONS_00001300-exon-sc0000007-1510915933:949293..950432Clytia hemisphaericaexon
TCONS_00001300-exon-sc0000007-1575043694:949293..950432TCONS_00001300-exon-sc0000007-1575043694:949293..950432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:949293..950432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0862937 0 0.0513896 0.0406088 0.342949 0.412798 0.610131 0.278433 0 0.482204 0.177407 0.263198 0.086554 0.394764 0.114428 0.146606 0.445596 0.0847789 0.810571 1.24002 0 0.0397232 0.163656 0.255603 0.0522524 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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