TCONS_00001299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001299
Unique NameTCONS_00001299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001299 ID=TCONS_00001299|Name=TCONS_00001299|organism=Clytia hemisphaerica|type=transcript|length=1012bp
TGTTTTCAAGGATTAAGAATCCTTCATTTCAAAAATGGCTGCCTTTGGCT
TTGACAATTTAGAAGTCATTTGCGAACACTTCAATCTTGCTAAAGAAAAG
TGTTTTTGCTATAACATTGTCTTTTACGAACACGGAaagaaaatcgattt
ttgtGCTTTCTTCAACACAACTTCTGAGATCGAACGAAGAAAGAGAATAC
CGCATATATACGGAAACAAtattcaaaacgaggctaaaaccgaAGACATA
GTTTTCGCAGCCATTATTGTTTTGGTTTCGATCGTTGGTATCCTTGGTAA
CtctattgttttgatgtttcctcaaagaaagaaaaagtcaacTCATCTGA
AATTAACGTATTCGCTGGCATCAACAGACTTAATCTCATCAGCAATTTTC
ATAGTCCTTTTAACGCCCACCTTTTGGACCAAAGAATGGGTTTATGGAGA
AGTTGGATGCAAAATCCTTCGAACTCTAATGTTAAATCAATCCAGCTTTG
CAATAGGTATCATTTTGGTCATAGCCATCGAGAGATTCTTCGGAATTGTG
AAACCCTTCAAAATTGGCATATCAACAAATTTCCGATGTATGATGTGTTT
GGCGATCAATTTTGTATTTGCTTTCTGTTCTGCTATTCCCTACATCAAAT
ATTTACACGTCAACCCCGAAACAGAAAAATGCACTGAAATGTGGCAACAT
AGAGGCTATGCCATCATTTATTCAGGTTTCAATTTGGTCTTCTTTTTTAT
CGTCCCTATCATCACAATCGGTGTTCTCTACTGGAAGATAATTGTCACAT
TGAGAAATCAAGCGCTCACTTTCAAATTTCTTAACGGTTCTTACGTCAGC
GAGAACTACGCAAAGCGTATTGAGTACAATAAAAGAACTATCAAAAACTT
ATTTGGAGTGGTGTTACTGTTTGTGTTGTTCAATTTACCTAACAAGGTCA
AATGGATCATATTTGACACCAGCAGCGGTGGCATGCATGGTACAGAGGAT
GCACTGACAAGC
Run BLAST on NCBI

protein sequence of TCONS_00001299-protein

>TCONS_00001299-protein ID=TCONS_00001299-protein|Name=TCONS_00001299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MAAFGFDNLEVICEHFNLAKEKCFCYNIVFYEHGKKIDFCAFFNTTSEIE
RRKRIPHIYGNNIQNEAKTEDIVFAAIIVLVSIVGILGNSIVLMFPQRKK
KSTHLKLTYSLASTDLISSAIFIVLLTPTFWTKEWVYGEVGCKILRTLML
NQSSFAIGIILVIAIERFFGIVKPFKIGISTNFRCMMCLAINFVFAFCSA
IPYIKYLHVNPETEKCTEMWQHRGYAIIYSGFNLVFFFIVPIITIGVLYW
KIIVTLRNQALTFKFLNGSYVSENYAKRIEYNKRTIKNLFGVVLLFVLFN
LPNKVKWIIFDTSSGGMHGTEDALTS
Run BLAST on NCBI

transcript from alignment at sc0000007:943596..944607

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001299 ID=TCONS_00001299|Name=TCONS_00001299|organism=Clytia hemisphaerica|type=transcript|length=1012bp|location=Sequence derived from alignment at sc0000007:943596..944607 (Clytia hemisphaerica)
GCTTGTCAGTGCATCCTCTGTACCATGCATGCCACCGCTGCTGGTGTCAA ATATGATCCATTTGACCTTGTTAGGTAAATTGAACAACACAAACAGTAAC ACCACTCCAAATAAGTTTTTGATAGTTCTTTTATTGTACTCAATACGCTT TGCGTAGTTCTCGCTGACGTAAGAACCGTTAAGAAATTTGAAAGTGAGCG CTTGATTTCTCAATGTGACAATTATCTTCCAGTAGAGAACACCGATTGTG ATGATAGGGACGATAAAAAAGAAGACCAAATTGAAACCTGAATAAATGAT GGCATAGCCTCTATGTTGCCACATTTCAGTGCATTTTTCTGTTTCGGGGT TGACGTGTAAATATTTGATGTAGGGAATAGCAGAACAGAAAGCAAATACA AAATTGATCGCCAAACACATCATACATCGGAAATTTGTTGATATGCCAAT TTTGAAGGGTTTCACAATTCCGAAGAATCTCTCGATGGCTATGACCAAAA TGATACCTATTGCAAAGCTGGATTGATTTAACATTAGAGTTCGAAGGATT TTGCATCCAACTTCTCCATAAACCCATTCTTTGGTCCAAAAGGTGGGCGT TAAAAGGACTATGAAAATTGCTGATGAGATTAAGTCTGTTGATGCCAGCG AATACGTTAATTTCAGATGAgttgactttttctttctttgaggaaacatc aaaacaatagaGTTACCAAGGATACCAACGATCGAAACCAAAACAATAAT GGCTGCGAAAACTATGTCTtcggttttagcctcgttttgaataTTGTTTC CGTATATATGCGGTATTCTCTTTCTTCGTTCGATCTCAGAAGTTGTGTTG AAGAAAGCacaaaaatcgattttcttTCCGTGTTCGTAAAAGACAATGTT ATAGCAAAAACACTTTTCTTTAGCAAGATTGAAGTGTTCGCAAATGACTT CTAAATTGTCAAAGCCAAAGGCAGCCATTTTTGAAATGAAGGATTCTTAA TCCTTGAAAACA

Coding sequence (CDS) from alignment at sc0000007:943596..944607

>TCONS_00001299 ID=TCONS_00001299|Name=TCONS_00001299|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000007:943596..944607 (Clytia hemisphaerica)
GCTTGTCAGTGCATCCTCTGTACCATGCATGCCACCGCTGCTGGTGTCAA
ATATGATCCATTTGACCTTGTTAGGTAAATTGAACAACACAAACAGTAAC
ACCACTCCAAATAAGTTTTTGATAGTTCTTTTATTGTACTCAATACGCTT
TGCGTAGTTCTCGCTGACGTAAGAACCGTTAAGAAATTTGAAAGTGAGCG
CTTGATTTCTCAATGTGACAATTATCTTCCAGTAGAGAACACCGATTGTG
ATGATAGGGACGATAAAAAAGAAGACCAAATTGAAACCTGAATAAATGAT
GGCATAGCCTCTATGTTGCCACATTTCAGTGCATTTTTCTGTTTCGGGGT
TGACGTGTAAATATTTGATGTAGGGAATAGCAGAACAGAAAGCAAATACA
AAATTGATCGCCAAACACATCATACATCGGAAATTTGTTGATATGCCAAT
TTTGAAGGGTTTCACAATTCCGAAGAATCTCTCGATGGCTATGACCAAAA
TGATACCTATTGCAAAGCTGGATTGATTTAACATTAGAGTTCGAAGGATT
TTGCATCCAACTTCTCCATAAACCCATTCTTTGGTCCAAAAGGTGGGCGT
TAAAAGGACTATGAAAATTGCTGATGAGATTAAGTCTGTTGATGCCAGCG
AATACGTTAATTTCAGATGAgttgactttttctttctttgaggaaacatc
aaaacaatagaGTTACCAAGGATACCAACGATCGAAACCAAAACAATAAT
GGCTGCGAAAACTATGTCTtcggttttagcctcgttttgaataTTGTTTC
CGTATATATGCGGTATTCTCTTTCTTCGTTCGATCTCAGAAGTTGTGTTG
AAGAAAGCacaaaaatcgattttcttTCCGTGTTCGTAAAAGACAATGTT
ATAGCAAAAACACTTTTCTTTAGCAAGATTGAAGTGTTCGCAAATGACTT
CTAAATTGTCAAAGCCAAAGGCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000703XLOC_000703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001299-exon-sc0000007-1491911889:943596..944607TCONS_00001299-exon-sc0000007-1491911889:943596..944607Clytia hemisphaericaexon
TCONS_00001299-exon-sc0000007-1510915933:943596..944607TCONS_00001299-exon-sc0000007-1510915933:943596..944607Clytia hemisphaericaexon
TCONS_00001299-exon-sc0000007-1575043694:943596..944607TCONS_00001299-exon-sc0000007-1575043694:943596..944607Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001299-proteinTCONS_00001299-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:943596..944607 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.100049 0 0 0 0 0.0531776 0 0 0 0 0 0 0 0 0 0.0829552 0 0 0.34105 0.563478 0.067413 0.155672 0.553727 2.10717 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top