TCONS_00001297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001297
Unique NameTCONS_00001297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001297 ID=TCONS_00001297|Name=TCONS_00001297|organism=Clytia hemisphaerica|type=transcript|length=735bp
CTTCAAAGTTTCCTTAAAATATCGATATTCGAGAAAAACAAAATCAGTTG
CGGGAATGACAATGGCACGGTTTAAAAACAGCATACCTTTAATACTGATT
GGAATTCTTCCTTTTTTACTTGCTCAAAGGTCTTGTATTGAAACTCAATG
CATTTCATACTTCAGTGGAATATGGGAGCCCACTACAGTTCCAATAGGAA
AATGCATCCAACAAATAGATGAGCTCATTGTACGTGAGAAACACTATGTG
AAGCCTTGGGGAAGTTGTCGAAGCACAGATTGTCTAAGAATGGCTCCTGG
CAGCAAAAAAGGAAGGGAGCGGGTTACGTGTAAGtcgtatttttttcatt
tcggaAAACTTATTCATCTTTTGCTATACCTGGTAAAGATAGAAGGTAGT
GAGGAAGTGAAAACGAGGGAAAGATAGCCGCTATCTTTCAACCAAACCAC
tactaagggggggggggtttgtaggggttcgaaataccgttttcccatca
aaatttttgctgaatcccggaatcccgaaaattggaaaaataataaaacc
gtcacaccggcttgtacagagcaaaaatgtacctaaataccgttttcccg
tctcttttttcgtcaaatcccgtaataccgtactaaaaaagggcaaatcc
cgtcacaccgtaaaagtacaaccccccctaCCAAGGGTGTTGTACCTTTT
TAAAATGCACTATTTCTTGTCATTATCTAACAATG
Run BLAST on NCBI

transcript from alignment at sc0000007:939357..940091

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001297 ID=TCONS_00001297|Name=TCONS_00001297|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0000007:939357..940091 (Clytia hemisphaerica)
CATTGTTAGATAATGACAAGAAATAGTGCATTTTAAAAAGGTACAACACC CTTGGtagggggggttgtacttttacggtgtgacgggatttgcccttttt tagtacggtattacgggatttgacgaaaaaagagacgggaaaacggtatt taggtacatttttgctctgtacaagccggtgtgacggttttattattttt ccaattttcgggattccgggattcagcaaaaattttgatgggaaaacggt atttcgaacccctacaaacccccccccccttagtaGTGGTTTGGTTGAAA GATAGCGGCTATCTTTCCCTCGTTTTCACTTCCTCACTACCTTCTATCTT TACCAGGTATAGCAAAAGATGAATAAGTTTtccgaaatgaaaaaaatacg aCTTACACGTAACCCGCTCCCTTCCTTTTTTGCTGCCAGGAGCCATTCTT AGACAATCTGTGCTTCGACAACTTCCCCAAGGCTTCACATAGTGTTTCTC ACGTACAATGAGCTCATCTATTTGTTGGATGCATTTTCCTATTGGAACTG TAGTGGGCTCCCATATTCCACTGAAGTATGAAATGCATTGAGTTTCAATA CAAGACCTTTGAGCAAGTAAAAAAGGAAGAATTCCAATCAGTATTAAAGG TATGCTGTTTTTAAACCGTGCCATTGTCATTCCCGCAACTGATTTTGTTT TTCTCGAATATCGATATTTTAAGGAAACTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000701XLOC_000701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001297-exon-sc0000007-1491911889:939357..940091TCONS_00001297-exon-sc0000007-1491911889:939357..940091Clytia hemisphaericaexon
TCONS_00001297-exon-sc0000007-1510915933:939357..940091TCONS_00001297-exon-sc0000007-1510915933:939357..940091Clytia hemisphaericaexon
TCONS_00001297-exon-sc0000007-1575043694:939357..940091TCONS_00001297-exon-sc0000007-1575043694:939357..940091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:939357..940091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.513596 0.552389 1.16758 1.74327 0.402976 0.337786 0.811039 0.544565 0.284186 0.211206 0.068334 0.361342 0.629802 0.601599 0.0765986 0.270476 0 0.212667 0.0743256 0.301282 0.555834 0.749743 0.162471 0.141094 1.01702 1.12574 0.541334 0.531752 0.494191 0.269482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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