TCONS_00001296 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001296
Unique Name	TCONS_00001296
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	609

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:914608..915216

transcript sequence

>TCONS_00001296 ID=TCONS_00001296|Name=TCONS_00001296|organism=Clytia hemisphaerica|type=transcript|length=609bp
TTTAACTAAAATCTCTCTTTGAAAATCAAGGATATTGTCCTAAATAATGT
TGAGGTTGTGAAACTTCTAGGGCTCAAAATCGAAGATAAGATCTCTCTTC
TTCCCCACGTGACTGAGCTCTGTAAACAATCCAACCAAAAATTAAGGGCT
CTTCGTAGGGTGAGAAACTTTCTGTCTGATGATCAAACTAAGATTCTTGT
AAACTCTTATATCTTGTCACCTTTTAATTACTGCCACCTGGTTTGGATGT
TTTGTGATAAAGGGGGAAGCAACCTTAAAGACAAATGCCACTACAGAGCA
CTCAGTGCTATTAANACTGTTTTGTGGTAAAGGGGGAAGCAACCTTATAG
ACAAATGCCACTACAGAGCACTCCGTGCTATTAAAAACAGTAGTGGTGTT
AGTTATGACGACTTACTAGCAGATTGTAATGTAGAGACTATTCATGCACG
CAATCTAAAACTTCTGTCcgttgaaattttcaagtcaatCCAGCACATCG
GACCTAACATTATGCATGATATTTTCAATACAGGACAATCTGCTTATACC
CTACGTTCTGGTCATACGTTAGCTTTAccattatataaaaaatttgatAG
TGTTTTTGC

Run BLAST on NCBI

transcript from alignment at sc0000007:914608..915216

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001296 ID=TCONS_00001296|Name=TCONS_00001296|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000007:914608..915216 (Clytia hemisphaerica)
GCAAAAACACTatcaaattttttatataatggTAAAGCTAACGTATGACC
AGAACGTAGGGTATAAGCAGATTGTCCTGTATTGAAAATATCATGCATAA
TGTTAGGTCCGATGTGCTGGattgacttgaaaatttcaacgGACAGAAGT
TTTAGATTGCGTGCATGAATAGTCTCTACATTACAATCTGCTAGTAAGTC
GTCATAACTAACACCACTACTGTTTTTAATAGCACGGAGTGCTCTGTAGT
GGCATTTGTCTATAAGGTTGCTTCCCCCTTTACCACAAAACAGTNTTAAT
AGCACTGAGTGCTCTGTAGTGGCATTTGTCTTTAAGGTTGCTTCCCCCTT
TATCACAAAACATCCAAACCAGGTGGCAGTAATTAAAAGGTGACAAGATA
TAAGAGTTTACAAGAATCTTAGTTTGATCATCAGACAGAAAGTTTCTCAC
CCTACGAAGAGCCCTTAATTTTTGGTTGGATTGTTTACAGAGCTCAGTCA
CGTGGGGAAGAAGAGAGATCTTATCTTCGATTTTGAGCCCTAGAAGTTTC
ACAACCTCAACATTATTTAGGACAATATCCTTGATTTTCAAAGAGAGATT
TTAGTTAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000700	XLOC_000700	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001296-exon-sc0000007-1491911889:914608..915216	TCONS_00001296-exon-sc0000007-1491911889:914608..915216	Clytia hemisphaerica	exon
TCONS_00001296-exon-sc0000007-1510915933:914608..915216	TCONS_00001296-exon-sc0000007-1510915933:914608..915216	Clytia hemisphaerica	exon
TCONS_00001296-exon-sc0000007-1575043694:914608..915216	TCONS_00001296-exon-sc0000007-1575043694:914608..915216	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:914608..915216 .

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177389	0.172982	0.301273	0.196499	0.598047	0.378067	0	0.747278	0.224223	0.648052	0.179719	0.41349	0.53089	0.551335	0.151091	0.216191	0.599243	0.341225	0.848557	0.69063	0.600283	0.501938	0.610171	0.64719	0.952272	0.934868	0.608088	0.648968	0.492219	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001296 vs. Swiss-Prot (Human)

BLAST of TCONS_00001296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001296 (transcript) - C. hemisphaerica