TCONS_00001296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001296
Unique NameTCONS_00001296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001296 ID=TCONS_00001296|Name=TCONS_00001296|organism=Clytia hemisphaerica|type=transcript|length=609bp
TTTAACTAAAATCTCTCTTTGAAAATCAAGGATATTGTCCTAAATAATGT
TGAGGTTGTGAAACTTCTAGGGCTCAAAATCGAAGATAAGATCTCTCTTC
TTCCCCACGTGACTGAGCTCTGTAAACAATCCAACCAAAAATTAAGGGCT
CTTCGTAGGGTGAGAAACTTTCTGTCTGATGATCAAACTAAGATTCTTGT
AAACTCTTATATCTTGTCACCTTTTAATTACTGCCACCTGGTTTGGATGT
TTTGTGATAAAGGGGGAAGCAACCTTAAAGACAAATGCCACTACAGAGCA
CTCAGTGCTATTAANACTGTTTTGTGGTAAAGGGGGAAGCAACCTTATAG
ACAAATGCCACTACAGAGCACTCCGTGCTATTAAAAACAGTAGTGGTGTT
AGTTATGACGACTTACTAGCAGATTGTAATGTAGAGACTATTCATGCACG
CAATCTAAAACTTCTGTCcgttgaaattttcaagtcaatCCAGCACATCG
GACCTAACATTATGCATGATATTTTCAATACAGGACAATCTGCTTATACC
CTACGTTCTGGTCATACGTTAGCTTTAccattatataaaaaatttgatAG
TGTTTTTGC
Run BLAST on NCBI

transcript from alignment at sc0000007:914608..915216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001296 ID=TCONS_00001296|Name=TCONS_00001296|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000007:914608..915216 (Clytia hemisphaerica)
GCAAAAACACTatcaaattttttatataatggTAAAGCTAACGTATGACC AGAACGTAGGGTATAAGCAGATTGTCCTGTATTGAAAATATCATGCATAA TGTTAGGTCCGATGTGCTGGattgacttgaaaatttcaacgGACAGAAGT TTTAGATTGCGTGCATGAATAGTCTCTACATTACAATCTGCTAGTAAGTC GTCATAACTAACACCACTACTGTTTTTAATAGCACGGAGTGCTCTGTAGT GGCATTTGTCTATAAGGTTGCTTCCCCCTTTACCACAAAACAGTNTTAAT AGCACTGAGTGCTCTGTAGTGGCATTTGTCTTTAAGGTTGCTTCCCCCTT TATCACAAAACATCCAAACCAGGTGGCAGTAATTAAAAGGTGACAAGATA TAAGAGTTTACAAGAATCTTAGTTTGATCATCAGACAGAAAGTTTCTCAC CCTACGAAGAGCCCTTAATTTTTGGTTGGATTGTTTACAGAGCTCAGTCA CGTGGGGAAGAAGAGAGATCTTATCTTCGATTTTGAGCCCTAGAAGTTTC ACAACCTCAACATTATTTAGGACAATATCCTTGATTTTCAAAGAGAGATT TTAGTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000700XLOC_000700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001296-exon-sc0000007-1491911889:914608..915216TCONS_00001296-exon-sc0000007-1491911889:914608..915216Clytia hemisphaericaexon
TCONS_00001296-exon-sc0000007-1510915933:914608..915216TCONS_00001296-exon-sc0000007-1510915933:914608..915216Clytia hemisphaericaexon
TCONS_00001296-exon-sc0000007-1575043694:914608..915216TCONS_00001296-exon-sc0000007-1575043694:914608..915216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:914608..915216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177389 0.172982 0.301273 0.196499 0.598047 0.378067 0 0.747278 0.224223 0.648052 0.179719 0.41349 0.53089 0.551335 0.151091 0.216191 0.599243 0.341225 0.848557 0.69063 0.600283 0.501938 0.610171 0.64719 0.952272 0.934868 0.608088 0.648968 0.492219 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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