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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001294 ID=TCONS_00001294|Name=TCONS_00001294|organism=Clytia hemisphaerica|type=transcript|length=1188bp
TCGAAATGAAAATGTGATCTGTGGTGATAGTATGCTAAATAACATTGTTG
GTAATGGCGTGTCGACGAAATCCACCCGAACTCTTGTTCGTAGCTTTCCT
GGTGCTGATACTGATGATATGCTTGACTACTTAAAGTcaattcttattaa
aaagaaaCCAAAGTATTTAATTCTCCATGTCGGAACTAATGACATTACGT
CTGGCTGTGACActgtaaaaaattttgaacgaaTTCGAGACCTGGTTATG
GAAATTAGCCCCAACACTGAACTGATCATTTCGAACGTCATTGTGCGAGA
TGATAAAAATGCCACCAAAAATATGAAAGACGAAGTCAAACTCAAAAATG
ATATATTGTCTAAATTCTGCTAAAAGTTTAATTTACACTTGATAAACCAC
GAtaatattggtaaaaatatgTTGTCTAAAAAGAAGTTACATTTGAATGG
TAACGGAATatcaaaacttgctcaaaatttaaaattcttcATTTCTGAAA
ATTGTTGCTGAGAATCTGAAAACCAGAATGAAGCTAatgaaatggtttgt
ttatCCTCTGATAATGTTGGCATTGATGACACTGATATGGTACATGTAAg
ataattgaaattgaaaaatccttCTAATATATCTATCTCATATCTTAATA
TTAACTCGATTAGAAATAAATTCACTGATCTACAAGTTTTAgtcgaaaaa
acttttgatgttaTTACTATAGCAGAAACTAAACTTGATGAGTCTTTTCC
AAGTGCTGATTTTAACCTTCAGGGCTATCACTTTCAAGGAGGAATAGATT
GTAATTCAAATAGTGGAGGACTTTTAACTTATGTGGAAAGCGACATTCCT
GCACGTCACTTGAAAAGCTTCAAATTAGACCCTTCTTTGCACATTCTTCC
GGTAGAACTAAGACTCAGGAAAGATAAGCTGCTTGTTTTTAACATATATA
GGCCAGATAGAATAAACttagatttattttttaatactttATCTGACGCA
ATACACTTCTATGAAGTAGACTATAACAACATCATCGTCATTGGAGATTT
TAACCTTGAACCTACTGATCCTAAGCTGGTACGTTTCCTTGAACTAAATG
ACATGGCTAATGTCATGAACTCAAAAATTTGCTTTAAATCTATAAATGGA
ACGTGCATTGACCTTATTTTGACTAACTCGAAAAAATC Run BLAST on NCBI protein sequence of TCONS_00001294-protein >TCONS_00001294-protein ID=TCONS_00001294-protein|Name=TCONS_00001294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
RNENVICGDSMLNNIVGNGVSTKSTRTLVRSFPGADTDDMLDYLKSILIK
KKPKYLILHVGTNDITSGCDTVKNFERIRDLVMEISPNTELIISNVIVRD
DKNATKNMKDEVKLKNDILSKFC Run BLAST on NCBI transcript from alignment at sc0000007:875502..876689 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001294 ID=TCONS_00001294|Name=TCONS_00001294|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at sc0000007:875502..876689 (Clytia hemisphaerica)
GATTTTTTCGAGTTAGTCAAAATAAGGTCAATGCACGTTCCATTTATAGA
TTTAAAGCAAATTTTTGAGTTCATGACATTAGCCATGTCATTTAGTTCAA
GGAAACGTACCAGCTTAGGATCAGTAGGTTCAAGGTTAAAATCTCCAATG
ACGATGATGTTGTTATAGTCTACTTCATAGAAGTGTATTGCGTCAGATaa
agtattaaaaaataaatctaaGTTTATTCTATCTGGCCTATATATGTTAA
AAACAAGCAGCTTATCTTTCCTGAGTCTTAGTTCTACCGGAAGAATGTGC
AAAGAAGGGTCTAATTTGAAGCTTTTCAAGTGACGTGCAGGAATGTCGCT
TTCCACATAAGTTAAAAGTCCTCCACTATTTGAATTACAATCTATTCCTC
CTTGAAAGTGATAGCCCTGAAGGTTAAAATCAGCACTTGGAAAAGACTCA
TCAAGTTTAGTTTCTGCTATAGTAAtaacatcaaaagttttttcgacTAA
AACTTGTAGATCAGTGAATTTATTTCTAATCGAGTTAATATTAAGATATG
AGATAGATATATTAGaaggatttttcaatttcaattatcTTACATGTACC
ATATCAGTGTCATCAATGCCAACATTATCAGAGGataaacaaaccatttc
atTAGCTTCATTCTGGTTTTCAGATTCTCAGCAACAATTTTCAGAAATga
agaattttaaattttgagcaagttttgatATTCCGTTACCATTCAAATGT
AACTTCTTTTTAGACAAcatatttttaccaatattaTCGTGGTTTATCAA
GTGTAAATTAAACTTTTAGCAGAATTTAGACAATATATCATTTTTGAGTT
TGACTTCGTCTTTCATATTTTTGGTGGCATTTTTATCATCTCGCACAATG
ACGTTCGAAATGATCAGTTCAGTGTTGGGGCTAATTTCCATAACCAGGTC
TCGAAttcgttcaaaattttttacagTGTCACAGCCAGACGTAATGTCAT
TAGTTCCGACATGGAGAATTAAATACTTTGGtttctttttaataagaatt
gACTTTAAGTAGTCAAGCATATCATCAGTATCAGCACCAGGAAAGCTACG
AACAAGAGTTCGGGTGGATTTCGTCGACACGCCATTACCAACAATGTTAT
TTAGCATACTATCACCACAGATCACATTTTCATTTCGA Coding sequence (CDS) from alignment at sc0000007:875502..876689 >TCONS_00001294 ID=TCONS_00001294|Name=TCONS_00001294|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000007:875502..876689 (Clytia hemisphaerica)
TTAGCAGAATTTAGACAATATATCATTTTTGAGTTTGACTTCGTCTTTCA
TATTTTTGGTGGCATTTTTATCATCTCGCACAATGACGTTCGAAATGATC
AGTTCAGTGTTGGGGCTAATTTCCATAACCAGGTCTCGAAttcgttcaaa
attttttacagTGTCACAGCCAGACGTAATGTCATTAGTTCCGACATGGA
GAATTAAATACTTTGGtttctttttaataagaattgACTTTAAGTAGTCA
AGCATATCATCAGTATCAGCACCAGGAAAGCTACGAACAAGAGTTCGGGT
GGATTTCGTCGACACGCCATTACCAACAATGTTATTTAGCATACTATCAC
CACAGATCACATTTTCATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001294-exon-sc0000007-1491911889:875502..876689 | TCONS_00001294-exon-sc0000007-1491911889:875502..876689 | Clytia hemisphaerica | exon |
| TCONS_00001294-exon-sc0000007-1510915933:875502..876689 | TCONS_00001294-exon-sc0000007-1510915933:875502..876689 | Clytia hemisphaerica | exon |
| TCONS_00001294-exon-sc0000007-1575043694:875502..876689 | TCONS_00001294-exon-sc0000007-1575043694:875502..876689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:875502..876689 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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