TCONS_00001293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001293
Unique NameTCONS_00001293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001293 ID=TCONS_00001293|Name=TCONS_00001293|organism=Clytia hemisphaerica|type=transcript|length=765bp
TTTCCTGTCAATGCTCTCTTTGACCAAGTGTTTAAAATGACAATCGCCAA
CACTTCGATGGTCGTCACCGAACCTACGTAGATCCAATAAGAGCAATACA
AAGCATATGATGTATACCTTGGGTCATAGGTGAAGAAAGTGAACGTACTT
TTCAAAACGATGTAGATATTCCACAAGACCAGGAAAGAATAAactgtttt
attttgaatgtcATTGAATGGTTTTCTTATGGCAAGATTTCGAAGATAGG
AAATGCCTAGGAAGGTACCCAAGCCAACACCAAATGAATAGACAGACATT
GCCATTCCGATGCTCTGTGTTACACAGCTTCCAATTGATAATACATCCAC
CATAACAAAATAAGGTAAACAAATCATACCGACAATCGTATCAGTCAAGG
ATAAATAAATgtaaagtttttgagaaattgtcAATTTCTTATTTGTCTTC
TTTAAACCAATGATAAGAGCGAAATTTGTGATTGCAACAAACACGGCAAA
CACGCCAAGAAGAAACATTTCAGCATGGCCCGTGCCCGTTTTACTCGTTG
TGCCATTGATGAATTGGTTTGTTTCGTTCGATAATGAAGATTGGTTGTCA
AAGTGCAGGAAAGGAATGCACAAAGCCATTTTTCAATTCTTAAATAACTT
GACGACGATCAGAGACAAGATATAAATGCCAGTTCCCATTAAGAGCGTAC
AATGTCATTGCTCTCCCTCAACCTCCTTATATAGGGATGGGTCACGAACC
TTATCTCGATTTAGA
Run BLAST on NCBI

protein sequence of TCONS_00001293-protein

>TCONS_00001293-protein ID=TCONS_00001293-protein|Name=TCONS_00001293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MALCIPFLHFDNQSSLSNETNQFINGTTSKTGTGHAEMFLLGVFAVFVAI
TNFALIIGLKKTNKKLTISQKLYIYLSLTDTIVGMICLPYFVMVDVLSIG
SCVTQSIGMAMSVYSFGVGLGTFLGISYLRNLAIRKPFNDIQNKTVYSFL
VLWNIYIVLKSTFTFFTYDPRYTSYALYCSYWIYVGSVTTIEVLAIVILN
TWSKRALTG
Run BLAST on NCBI

transcript from alignment at sc0000007:860093..860857

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001293 ID=TCONS_00001293|Name=TCONS_00001293|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at sc0000007:860093..860857 (Clytia hemisphaerica)
TCTAAATCGAGATAAGGTTCGTGACCCATCCCTATATAAGGAGGTTGAGG GAGAGCAATGACATTGTACGCTCTTAATGGGAACTGGCATTTATATCTTG TCTCTGATCGTCGTCAAGTTATTTAAGAATTGAAAAATGGCTTTGTGCAT TCCTTTCCTGCACTTTGACAACCAATCTTCATTATCGAACGAAACAAACC AATTCATCAATGGCACAACGAGTAAAACGGGCACGGGCCATGCTGAAATG TTTCTTCTTGGCGTGTTTGCCGTGTTTGTTGCAATCACAAATTTCGCTCT TATCATTGGTTTAAAGAAGACAAATAAGAAATTgacaatttctcaaaaac tttacATTTATTTATCCTTGACTGATACGATTGTCGGTATGATTTGTTTA CCTTATTTTGTTATGGTGGATGTATTATCAATTGGAAGCTGTGTAACACA GAGCATCGGAATGGCAATGTCTGTCTATTCATTTGGTGTTGGCTTGGGTA CCTTCCTAGGCATTTCCTATCTTCGAAATCTTGCCATAAGAAAACCATTC AATgacattcaaaataaaacagtTTATTCTTTCCTGGTCTTGTGGAATAT CTACATCGTTTTGAAAAGTACGTTCACTTTCTTCACCTATGACCCAAGGT ATACATCATATGCTTTGTATTGCTCTTATTGGATCTACGTAGGTTCGGTG ACGACCATCGAAGTGTTGGCGATTGTCATTTTAAACACTTGGTCAAAGAG AGCATTGACAGGAAA

Coding sequence (CDS) from alignment at sc0000007:860093..860857

>TCONS_00001293 ID=TCONS_00001293|Name=TCONS_00001293|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000007:860093..860857 (Clytia hemisphaerica)
ATGGCTTTGTGCATTCCTTTCCTGCACTTTGACAACCAATCTTCATTATC
GAACGAAACAAACCAATTCATCAATGGCACAACGAGTAAAACGGGCACGG
GCCATGCTGAAATGTTTCTTCTTGGCGTGTTTGCCGTGTTTGTTGCAATC
ACAAATTTCGCTCTTATCATTGGTTTAAAGAAGACAAATAAGAAATTgac
aatttctcaaaaactttacATTTATTTATCCTTGACTGATACGATTGTCG
GTATGATTTGTTTACCTTATTTTGTTATGGTGGATGTATTATCAATTGGA
AGCTGTGTAACACAGAGCATCGGAATGGCAATGTCTGTCTATTCATTTGG
TGTTGGCTTGGGTACCTTCCTAGGCATTTCCTATCTTCGAAATCTTGCCA
TAAGAAAACCATTCAATgacattcaaaataaaacagtTTATTCTTTCCTG
GTCTTGTGGAATATCTACATCGTTTTGAAAAGTACGTTCACTTTCTTCAC
CTATGACCCAAGGTATACATCATATGCTTTGTATTGCTCTTATTGGATCT
ACGTAGGTTCGGTGACGACCATCGAAGTGTTGGCGATTGTCATTTTAAAC
ACTTGGTCAAAGAGAGCATTGACAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000697XLOC_000697Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001293-proteinTCONS_00001293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001293-exon-sc0000007-1491911889:860093..860857TCONS_00001293-exon-sc0000007-1491911889:860093..860857Clytia hemisphaericaexon
TCONS_00001293-exon-sc0000007-1510915933:860093..860857TCONS_00001293-exon-sc0000007-1510915933:860093..860857Clytia hemisphaericaexon
TCONS_00001293-exon-sc0000007-1575043694:860093..860857TCONS_00001293-exon-sc0000007-1575043694:860093..860857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:860093..860857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0638089 0 0.144495 0 0 0 0 0 0.161312 0.0666035 0 0 0.0848746 0.0440715 0 0 0.143703 0.392777 0.203491 0.141959 0.616941 0 0.146324 0 0.0685088 0.122285 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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