Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001293 ID=TCONS_00001293|Name=TCONS_00001293|organism=Clytia hemisphaerica|type=transcript|length=765bp
TTTCCTGTCAATGCTCTCTTTGACCAAGTGTTTAAAATGACAATCGCCAA
CACTTCGATGGTCGTCACCGAACCTACGTAGATCCAATAAGAGCAATACA
AAGCATATGATGTATACCTTGGGTCATAGGTGAAGAAAGTGAACGTACTT
TTCAAAACGATGTAGATATTCCACAAGACCAGGAAAGAATAAactgtttt
attttgaatgtcATTGAATGGTTTTCTTATGGCAAGATTTCGAAGATAGG
AAATGCCTAGGAAGGTACCCAAGCCAACACCAAATGAATAGACAGACATT
GCCATTCCGATGCTCTGTGTTACACAGCTTCCAATTGATAATACATCCAC
CATAACAAAATAAGGTAAACAAATCATACCGACAATCGTATCAGTCAAGG
ATAAATAAATgtaaagtttttgagaaattgtcAATTTCTTATTTGTCTTC
TTTAAACCAATGATAAGAGCGAAATTTGTGATTGCAACAAACACGGCAAA
CACGCCAAGAAGAAACATTTCAGCATGGCCCGTGCCCGTTTTACTCGTTG
TGCCATTGATGAATTGGTTTGTTTCGTTCGATAATGAAGATTGGTTGTCA
AAGTGCAGGAAAGGAATGCACAAAGCCATTTTTCAATTCTTAAATAACTT
GACGACGATCAGAGACAAGATATAAATGCCAGTTCCCATTAAGAGCGTAC
AATGTCATTGCTCTCCCTCAACCTCCTTATATAGGGATGGGTCACGAACC
TTATCTCGATTTAGA Run BLAST on NCBI protein sequence of TCONS_00001293-protein >TCONS_00001293-protein ID=TCONS_00001293-protein|Name=TCONS_00001293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MALCIPFLHFDNQSSLSNETNQFINGTTSKTGTGHAEMFLLGVFAVFVAI
TNFALIIGLKKTNKKLTISQKLYIYLSLTDTIVGMICLPYFVMVDVLSIG
SCVTQSIGMAMSVYSFGVGLGTFLGISYLRNLAIRKPFNDIQNKTVYSFL
VLWNIYIVLKSTFTFFTYDPRYTSYALYCSYWIYVGSVTTIEVLAIVILN
TWSKRALTG Run BLAST on NCBI transcript from alignment at sc0000007:860093..860857 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001293 ID=TCONS_00001293|Name=TCONS_00001293|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at sc0000007:860093..860857 (Clytia hemisphaerica)
TCTAAATCGAGATAAGGTTCGTGACCCATCCCTATATAAGGAGGTTGAGG
GAGAGCAATGACATTGTACGCTCTTAATGGGAACTGGCATTTATATCTTG
TCTCTGATCGTCGTCAAGTTATTTAAGAATTGAAAAATGGCTTTGTGCAT
TCCTTTCCTGCACTTTGACAACCAATCTTCATTATCGAACGAAACAAACC
AATTCATCAATGGCACAACGAGTAAAACGGGCACGGGCCATGCTGAAATG
TTTCTTCTTGGCGTGTTTGCCGTGTTTGTTGCAATCACAAATTTCGCTCT
TATCATTGGTTTAAAGAAGACAAATAAGAAATTgacaatttctcaaaaac
tttacATTTATTTATCCTTGACTGATACGATTGTCGGTATGATTTGTTTA
CCTTATTTTGTTATGGTGGATGTATTATCAATTGGAAGCTGTGTAACACA
GAGCATCGGAATGGCAATGTCTGTCTATTCATTTGGTGTTGGCTTGGGTA
CCTTCCTAGGCATTTCCTATCTTCGAAATCTTGCCATAAGAAAACCATTC
AATgacattcaaaataaaacagtTTATTCTTTCCTGGTCTTGTGGAATAT
CTACATCGTTTTGAAAAGTACGTTCACTTTCTTCACCTATGACCCAAGGT
ATACATCATATGCTTTGTATTGCTCTTATTGGATCTACGTAGGTTCGGTG
ACGACCATCGAAGTGTTGGCGATTGTCATTTTAAACACTTGGTCAAAGAG
AGCATTGACAGGAAA Coding sequence (CDS) from alignment at sc0000007:860093..860857 >TCONS_00001293 ID=TCONS_00001293|Name=TCONS_00001293|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000007:860093..860857 (Clytia hemisphaerica)
ATGGCTTTGTGCATTCCTTTCCTGCACTTTGACAACCAATCTTCATTATC
GAACGAAACAAACCAATTCATCAATGGCACAACGAGTAAAACGGGCACGG
GCCATGCTGAAATGTTTCTTCTTGGCGTGTTTGCCGTGTTTGTTGCAATC
ACAAATTTCGCTCTTATCATTGGTTTAAAGAAGACAAATAAGAAATTgac
aatttctcaaaaactttacATTTATTTATCCTTGACTGATACGATTGTCG
GTATGATTTGTTTACCTTATTTTGTTATGGTGGATGTATTATCAATTGGA
AGCTGTGTAACACAGAGCATCGGAATGGCAATGTCTGTCTATTCATTTGG
TGTTGGCTTGGGTACCTTCCTAGGCATTTCCTATCTTCGAAATCTTGCCA
TAAGAAAACCATTCAATgacattcaaaataaaacagtTTATTCTTTCCTG
GTCTTGTGGAATATCTACATCGTTTTGAAAAGTACGTTCACTTTCTTCAC
CTATGACCCAAGGTATACATCATATGCTTTGTATTGCTCTTATTGGATCT
ACGTAGGTTCGGTGACGACCATCGAAGTGTTGGCGATTGTCATTTTAAAC
ACTTGGTCAAAGAGAGCATTGACAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001293-exon-sc0000007-1491911889:860093..860857 | TCONS_00001293-exon-sc0000007-1491911889:860093..860857 | Clytia hemisphaerica | exon |
| TCONS_00001293-exon-sc0000007-1510915933:860093..860857 | TCONS_00001293-exon-sc0000007-1510915933:860093..860857 | Clytia hemisphaerica | exon |
| TCONS_00001293-exon-sc0000007-1575043694:860093..860857 | TCONS_00001293-exon-sc0000007-1575043694:860093..860857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:860093..860857 . |
Blast
The following BLAST results are available for this feature:
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